Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008365

Physical Location & Seq

Genomic Coordinates Forward (+)

1786849 .. 1789737

Gene Structure 2889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGATTCTCACCGGAGCCGCTTCAACATTTCCCATCGTCGCTCGAGTTTTGAACGCTATGAATCGCCGTATGTATGCTGCTACTACTCTATCATCTGCCAAATCAATCTCTGCAGAATCCCTAAATCTTCGTTCCGATTCCAATTCAGAGGCAGCGCATGGTGCTTCTGAGTCTGAGACTCGAGTCTCTTTAAGGAAGAAGAGGATAAAGCAGGATGATTTGGAGCCTGTAAAGAAATGTTCCGCCAGAGAAACCAAGGCCCGCAAGGACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGAAGACTAATGGAACTGCTTCATCTAGGACGAGAAAACTAAACTCATACATAAAATCAACAGAAGCTAGCCCTTCTGCATCGTCGATCAAAACAGCAGGGCTAGGCATACCACCTGAAAACTGGGAAAAGGTGCTCGAGGGTATTCGAAAAATGAAACCTTCAGAAGAAGCACCAGTTAATGCTGTAGAATGTGATAGAACCGGAAGCTTTTTACCTCCAAAGGAAAGGCGATTTTATGTGCTCATAGGAACACTTCTTTCAAGTCAGACTAAAGAGCACATAACTGGTGCGGCAGTAGAACGACTTCATCAAAATGGCCTTCTCACTCCTGAAGCCATTGACAAAGCCGATGAATCAACCATTAAGGAATTGATCTATCCGGTTGGATTCTATACTAGAAAGGCTACTAATGTGAAGAAAGTTGCAAAAATATGTCTAATGGAATATGACGGTGACATTCCAAGGACTTTGGAAGAACTACTTTCACTTCCAGGAGTTGGTCCTAAGATTGCTCATCTGGTTTTGCATGTAGCCTGGAATGATGTTCAAGGGATATGTGTAGACACACATGTGCATCGTATTTGCAATAGACTTGGTTGGGTGTCTAAACCTGGAACGAAACAGGTGCTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0000703 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006289 GO:0006296 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009295 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0016787 GO:0016798 GO:0016799 GO:0018022 GO:0018193 GO:0018205 GO:0019104 GO:0019538 GO:0030054 GO:0032259 GO:0033554 GO:0033683 GO:0034641 GO:0036211 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0090305 GO:0140096 GO:0140097 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

314

Amino Acids

34.49

Weight (kDa)

9.32

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	185 - 313	8.4e-22	HhH-GPD superfamily base excision DNA repair protein
HHH	PF00633	251 - 278	7.2e-09	Helix-hairpin-helix motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05900 AT1G05900 AT2G31450 AT2G31450
fragaria_vesca	FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690
malus_domestica	MD04G1007400.v1.1
prunus_persica	Prupe.1G191600_v2.0.a1 Prupe.1G191600_v2.0.a1
pyrus_communis	pycom04g03440
rosa_chinensis	RchiOBHm_Chr4g0407021
rosa_laevigata	RLG00000008743
rosa_multiflora	Rmu_co8205520.1_g000001
rosa_rugosa	Rorug04G0076900
rosa_samantha	Rh4AG142100 Rh4BG139300 Rh4CG148700 Rh4DG136300
rosa_wichuraiana	Rw4G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AccB7I	CCANNNNNTGG	1 cut(s)	806
AccI	GTMKAC	1 cut(s)	870
AciI	CCGC	4 cut(s)	18, 243, 262, 599
AcuI	CTGAAG	2 cut(s)	453, 660
AfiI	CCNNNNNNNGG	1 cut(s)	806
AflIII	ACRYGT	2 cut(s)	270, 877
AgsI	TTSAA	4 cut(s)	24, 52, 570, 857
AjnI	CCWGG	3 cut(s)	799, 842, 919
AleI	CACNNNNGTG	1 cut(s)	878
AluBI	AGCT	2 cut(s)	374, 516
AluI	AGCT	2 cut(s)	374, 516
Alw21I	GWGCWC	3 cut(s)	444, 552, 588
Alw26I	GTCTC	2 cut(s)	170, 190
Ama87I	CYCGRG	3 cut(s)	42, 180, 443
AoxI	GGCC	2 cut(s)	258, 625
ApeKI	GCWGC	2 cut(s)	77, 152
Asp700I	GAANNNNTTC	2 cut(s)	325, 612
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	259, 809
AsuHPI	GGTGA	1 cut(s)	773
AsuII	TTCGAA	1 cut(s)	454
AsuNHI	GCTAGC	1 cut(s)	374
AvaI	CYCGRG	3 cut(s)	42, 180, 443
AvaII	GGWCC	1 cut(s)	809
BarI	GAAGNNNNNNTAC	2 cut(s)	597, 629
BbsI	GAAGAC	2 cut(s)	300, 317
Bbv12I	GWGCWC	3 cut(s)	444, 552, 588
BbvI	GCAGC	2 cut(s)	64, 164
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	51
BcgI	CGANNNNNNTGC	1 cut(s)	916
BciT130I	CCWGG	3 cut(s)	801, 844, 921
BcoDI	GTCTC	2 cut(s)	170, 190
BfaI	CTAG	4 cut(s)	333, 375, 410, 705
BfmI	CTRYAG	2 cut(s)	111, 492
BisI	GCNGC	4 cut(s)	18, 78, 153, 600
BlsI	GCNGC	4 cut(s)	19, 79, 154, 601
Bme1390I	CCNGG	3 cut(s)	801, 844, 921
Bme18I	GGWCC	1 cut(s)	809
BmeT110I	CYCGRG	3 cut(s)	42, 180, 443
BmgT120I	GGNCC	2 cut(s)	259, 809
BmiI	GGNNCC	2 cut(s)	16, 225
BmrFI	CCNGG	3 cut(s)	801, 844, 921
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	2 cut(s)	395, 892
BmtI	GCTAGC	1 cut(s)	378
BmuI	ACTGGG	1 cut(s)	439
BoxI	GACNNNNGTC	1 cut(s)	182
BpiI	GAAGAC	2 cut(s)	300, 317
Bpu14I	TTCGAA	1 cut(s)	454
BsaJI	CCNNGG	2 cut(s)	255, 770
BsaWI	WCCGGW	3 cut(s)	11, 509, 688
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse1I	ACTGG	3 cut(s)	434, 482, 598
BseBI	CCWGG	3 cut(s)	801, 844, 921
BseDI	CCNNGG	2 cut(s)	255, 770
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMII	CTCAG	2 cut(s)	159, 165
BseNI	ACTGG	3 cut(s)	434, 482, 598
BseXI	GCAGC	2 cut(s)	64, 164
BshFI	GGCC	2 cut(s)	260, 627
BsiHKAI	GWGCWC	3 cut(s)	444, 552, 588
BsiHKCI	CYCGRG	3 cut(s)	42, 180, 443
BsiSI	CCGG	3 cut(s)	12, 510, 689
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	2 cut(s)	170, 190
BsnI	GGCC	2 cut(s)	260, 627
BsoBI	CYCGRG	3 cut(s)	42, 180, 443
Bsp119I	TTCGAA	1 cut(s)	454
Bsp1286I	GDGCHC	3 cut(s)	444, 552, 588
Bsp143I	GATC	2 cut(s)	393, 681
BspACI	CCGC	4 cut(s)	18, 243, 262, 599
BspANI	GGCC	2 cut(s)	260, 627
BspCNI	CTCAG	2 cut(s)	160, 166
BspLI	GGNNCC	2 cut(s)	16, 225
BspMAI	CTGCAG	1 cut(s)	115
BspOI	GCTAGC	1 cut(s)	378
BspT104I	TTCGAA	1 cut(s)	454
BsrI	ACTGG	3 cut(s)	434, 482, 598
BssECI	CCNNGG	2 cut(s)	255, 770
BssMI	GATC	2 cut(s)	393, 681
BssT1I	CCWWGG	2 cut(s)	255, 770
Bst2UI	CCWGG	3 cut(s)	801, 844, 921
Bst4CI	ACNGT	1 cut(s)	761
Bst6I	CTCTTC	1 cut(s)	194
BstBI	TTCGAA	1 cut(s)	454
BstC8I	GCNNGC	2 cut(s)	262, 376
BstDEI	CTNAG	3 cut(s)	168, 174, 813
BstF5I	GGATG	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	2 cut(s)	396, 684
BstMAI	GTCTC	2 cut(s)	170, 190
BstMBI	GATC	2 cut(s)	393, 681
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	3 cut(s)	801, 844, 921
BstNSI	RCATGY	3 cut(s)	274, 839, 881
BstPAI	GACNNNNGTC	1 cut(s)	182
BstSCI	CCNGG	3 cut(s)	799, 842, 919
BstSFI	CTRYAG	2 cut(s)	111, 492
BstV1I	GCAGC	2 cut(s)	64, 164
BstV2I	GAAGAC	2 cut(s)	300, 317
BsuRI	GGCC	2 cut(s)	260, 627
BtsCI	GGATG	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	262, 376
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	259, 809
CviAII	CATG	4 cut(s)	158, 271, 836, 878
DdeI	CTNAG	3 cut(s)	168, 174, 813
DpnI	GATC	2 cut(s)	395, 683
DpnII	GATC	2 cut(s)	393, 681
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EciI	GGCGGA	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	255, 770
Eco47I	GGWCC	1 cut(s)	809
Eco57I	CTGAAG	2 cut(s)	453, 660
Eco88I	CYCGRG	3 cut(s)	42, 180, 443
EcoRII	CCWGG	3 cut(s)	799, 842, 919
EcoT14I	CCWWGG	2 cut(s)	255, 770
ErhI	CCWWGG	2 cut(s)	255, 770
FaeI	CATG	4 cut(s)	161, 274, 839, 881
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FatI	CATG	4 cut(s)	157, 270, 835, 877
FauI	CCCGC	1 cut(s)	269
FblI	GTMKAC	1 cut(s)	870
Fnu4HI	GCNGC	4 cut(s)	18, 78, 153, 600
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	18, 78, 153, 600
FspBI	CTAG	4 cut(s)	333, 375, 410, 705
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	4 cut(s)	18, 78, 153, 600
HaeIII	GGCC	2 cut(s)	260, 627
HapII	CCGG	3 cut(s)	12, 510, 689
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	4 cut(s)	161, 274, 839, 881
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	514
HpaII	CCGG	3 cut(s)	12, 510, 689
HphI	GGTGA	1 cut(s)	773
Hpy166II	GTNNAC	1 cut(s)	871
Hpy188I	TCNGA	6 cut(s)	136, 148, 169, 175, 472, 576
Hpy188III	TCNNGA	1 cut(s)	638
Hpy8I	GTNNAC	1 cut(s)	871
Hpy99I	CGWCG	2 cut(s)	41, 394
HpyAV	CCTTC	3 cut(s)	390, 477, 638
HpyCH4III	ACNGT	1 cut(s)	761
HpyCH4V	TGCA	6 cut(s)	113, 386, 734, 835, 883, 894
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	168, 174, 813
Hsp92II	CATG	4 cut(s)	161, 274, 839, 881
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	393, 681
LmnI	GCTCC	2 cut(s)	14, 223
Lsp1109I	GCAGC	2 cut(s)	64, 164
LweI	GCATC	2 cut(s)	395, 892
MaeI	CTAG	4 cut(s)	333, 375, 410, 705
MaeIII	GTNAC	1 cut(s)	761
MalI	GATC	2 cut(s)	395, 683
MboI	GATC	2 cut(s)	393, 681
MboII	GAAGA	8 cut(s)	119, 208, 211, 305, 322, 485, 736, 794
MhlI	GDGCHC	3 cut(s)	444, 552, 588
MluCI	AATT	2 cut(s)	142, 677
MlyI	GAGTC	4 cut(s)	172, 179, 192, 290
MmeI	TCCRAC	1 cut(s)	673
MnlI	CCTC	4 cut(s)	142, 195, 439, 534
MroXI	GAANNNNTTC	2 cut(s)	325, 612
MseI	TTAA	3 cut(s)	191, 486, 672
MslI	CAYNNNNRTG	2 cut(s)	621, 878
MspI	CCGG	3 cut(s)	12, 510, 689
MspR9I	CCNGG	3 cut(s)	801, 844, 921
MvaI	CCWGG	3 cut(s)	801, 844, 921
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	2 cut(s)	393, 681
NheI	GCTAGC	1 cut(s)	374
NlaIII	CATG	4 cut(s)	161, 274, 839, 881
NlaIV	GGNNCC	2 cut(s)	16, 225
NmuCI	GTSAC	1 cut(s)	761
NspI	RCATGY	3 cut(s)	274, 839, 881
NspV	TTCGAA	1 cut(s)	454
OliI	CACNNNNGTG	1 cut(s)	878
PaeR7I	CTCGAG	3 cut(s)	42, 180, 443
PciI	ACATGT	2 cut(s)	270, 877
PdmI	GAANNNNTTC	2 cut(s)	325, 612
PfeI	GAWTC	6 cut(s)	4, 61, 116, 137, 662, 696
PflMI	CCANNNNNTGG	1 cut(s)	806
PfoI	TCCNGGA	1 cut(s)	799
PkrI	GCNGC	4 cut(s)	19, 79, 154, 601
PleI	GAGTC	4 cut(s)	172, 178, 191, 290
PpsI	GAGTC	4 cut(s)	172, 178, 191, 290
PscI	ACATGT	2 cut(s)	270, 877
PshAI	GACNNNNGTC	1 cut(s)	182
PsiI	TTATAA	1 cut(s)	306
Psp6I	CCWGG	3 cut(s)	799, 842, 919
PspGI	CCWGG	3 cut(s)	799, 842, 919
PspN4I	GGNNCC	2 cut(s)	16, 225
PspPI	GGNCC	2 cut(s)	259, 809
PspXI	VCTCGAGB	3 cut(s)	42, 180, 443
PstI	CTGCAG	1 cut(s)	115
RseI	CAYNNNNRTG	2 cut(s)	621, 878
SaqAI	TTAA	3 cut(s)	191, 486, 672
SatI	GCNGC	4 cut(s)	18, 78, 153, 600
Sau3AI	GATC	2 cut(s)	393, 681
Sau96I	GGNCC	2 cut(s)	259, 809
SchI	GAGTC	4 cut(s)	172, 179, 192, 290
ScrFI	CCNGG	3 cut(s)	801, 844, 921
SduI	GDGCHC	3 cut(s)	444, 552, 588
SetI	ASST	9 cut(s)	286, 376, 424, 441, 469, 518, 526, 922, 936
SfaNI	GCATC	2 cut(s)	395, 892
SfcI	CTRYAG	2 cut(s)	111, 492
Sfr274I	CTCGAG	3 cut(s)	42, 180, 443
SfuI	TTCGAA	1 cut(s)	454
SinI	GGWCC	1 cut(s)	809
SlaI	CTCGAG	3 cut(s)	42, 180, 443
SmiMI	CAYNNNNRTG	2 cut(s)	621, 878
SmlI	CTYRAG	3 cut(s)	42, 180, 443
SmoI	CTYRAG	3 cut(s)	42, 180, 443
Sse9I	AATT	2 cut(s)	142, 677
SsiI	CCGC	4 cut(s)	18, 243, 262, 599
SspMI	CTAG	4 cut(s)	333, 375, 410, 705
StyD4I	CCNGG	3 cut(s)	799, 842, 919
StyI	CCWWGG	2 cut(s)	255, 770
TaaI	ACNGT	1 cut(s)	761
TaqI	TCGA	5 cut(s)	43, 181, 392, 444, 454
TasI	AATT	2 cut(s)	142, 677
TauI	GCSGC	2 cut(s)	20, 602
TfiI	GAWTC	6 cut(s)	4, 61, 116, 137, 662, 696
Tru1I	TTAA	3 cut(s)	191, 486, 672
Tru9I	TTAA	3 cut(s)	191, 486, 672
TseFI	GTSAC	1 cut(s)	761
TseI	GCWGC	2 cut(s)	77, 152
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	5 cut(s)	74, 318, 476, 605, 675
Van91I	CCANNNNNTGG	1 cut(s)	806
VpaK11BI	GGWCC	1 cut(s)	809
XceI	RCATGY	3 cut(s)	274, 839, 881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	426
XhoI	CTCGAG	3 cut(s)	42, 180, 443
XmiI	GTMKAC	1 cut(s)	870
XmnI	GAANNNNTTC	2 cut(s)	325, 612
XspI	CTAG	4 cut(s)	333, 375, 410, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.