Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008365

Physical Location & Seq

Genomic Coordinates Reverse (-)

36133064 .. 36137880

Gene Structure 4817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008743

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTTCCAAATTCGCGGGACAAGTCCTTCCACCTCCACGCTCGCCTCTCTGACCAAAACACAATTCTTCAACACCTACGCAAGAAGAACAAGGATGTCCAGATCACCAACATTCTCTGCCAACTCAGACCCAGACCCAGACCCAAACCCAAACCCAGGAGGCTCCGACGCCGCCGTTTCAAAGCCGGAGCTTCGTGTTTTTGCGAGGAGAAAGAGACTGAAAATGACGGAGCAACAGCTTATTACTGTAGAAGCAAAACCCCACAAACTTGATCTCCTACCTGACATTGAAGAATTTGGGTACAGAAATGAGACTTCATCTTCTTATTCAATTGACATAGGTAAGCCACCTGCTAACTGGGAGAAAGTCCTCCAAGGGATTCGCAAAATGAGGTCTTCTGAAGATGCACCTGTAGACAGTATGGGTTGTGAGAAAGCCGGAAGTGCTCTCCCTCCTAAGGAGAGAAGATTTGCTGTCTTGGTATCCTCCCTACTGTCAAGCCAAACGAAGGATCACGTTACTCATGGAGCAATTCAGCGTCTCCTTCAAAATGGTTTGCTCTCTGCCGATGCCATTGACAAAGGTGATGAAGCAACCATTAAAAGCTTGATTTACCCGGTTGGCTTTTATACAAGAAAGGCTAGTAACTTGAAGAAAATTGCAAAAATTTGTCTTGTCAAGTACGACGGAGATATACCAAGCTCATTGGAGGAACTCCTCTCACTTCCAGGAATAGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGCTTGGGACAATGTTCAAGGGATTTGTGTAGATACCCATGTGCACCGGATTTGCAACCGCCTTGGCTGGGTGTCAAAGGCAGGCAAAAAACAGAAAACATCAAACCCTGAGGAAACGAGAGAGGCATTGCAATTGTGGCTTCCGAAGGAAGAATGGGTTCCCATAAACCCTCTTTTGGTGGGATTTGGACAGACAGTTTGCACTCCGCTCAGACCTCGCTGTGGAGTCTGCAGTGTGAGTGAATTCTGCCCATCTGCATTCAAAGAGACCTCAAGTCCATTATCCAAGACAAAGAAATCTGGTTCGAGCAAGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0000703 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006289 GO:0006296 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009295 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0016787 GO:0016798 GO:0016799 GO:0018022 GO:0018193 GO:0018205 GO:0019104 GO:0019538 GO:0030054 GO:0032259 GO:0033554 GO:0033683 GO:0034641 GO:0036211 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0090305 GO:0140096 GO:0140097 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

363

Amino Acids

39.91

Weight (kDa)

9.44

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	161 - 299	4.5e-22	HhH-GPD superfamily base excision DNA repair protein
HHH	PF00633	227 - 255	5.2e-09	Helix-hairpin-helix motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05900 AT1G05900 AT2G31450 AT2G31450
fragaria_vesca	FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690
malus_domestica	MD04G1007400.v1.1
prunus_persica	Prupe.1G191600_v2.0.a1 Prupe.1G191600_v2.0.a1
pyrus_communis	pycom04g03440
rosa_chinensis	RchiOBHm_Chr4g0407021
rosa_laevigata	RLG00000008743
rosa_multiflora	Rmu_co8205520.1_g000001
rosa_rugosa	Rorug04G0076900
rosa_samantha	Rh4AG142100 Rh4BG139300 Rh4CG148700 Rh4DG136300
rosa_wichuraiana	Rw4G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	358
AccBSI	CCGCTC	1 cut(s)	976
AccI	GTMKAC	1 cut(s)	414
AccII	CGCG	1 cut(s)	15
AciI	CCGC	4 cut(s)	15, 171, 826, 974
AclWI	GGATC	1 cut(s)	519
AcsI	RAATTY	4 cut(s)	9, 293, 666, 1010
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	2 cut(s)	302, 683
AfiI	CCNNNNNNNGG	7 cut(s)	155, 457, 508, 734, 835, 943, 989
AgsI	TTSAA	8 cut(s)	70, 180, 290, 330, 548, 652, 785, 1030
AhdI	GACNNNNNGTC	1 cut(s)	1041
AjnI	CCWGG	2 cut(s)	154, 727
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	4 cut(s)	190, 238, 606, 702
AluI	AGCT	4 cut(s)	190, 238, 606, 702
Alw21I	GWGCWC	2 cut(s)	448, 813
Alw26I	GTCTC	4 cut(s)	208, 305, 545, 1028
Alw44I	GTGCAC	1 cut(s)	809
AlwI	GGATC	1 cut(s)	519
ApaLI	GTGCAC	1 cut(s)	809
ApoI	RAATTY	4 cut(s)	9, 293, 666, 1010
ArsI	GACNNNNNNTTYG	2 cut(s)	948, 980
Asp700I	GAANNNNTTC	1 cut(s)	924
AspS9I	GGNCC	1 cut(s)	737
AsuC2I	CCSGG	1 cut(s)	617
AsuHPI	GGTGA	2 cut(s)	96, 596
AvaII	GGWCC	1 cut(s)	737
AxyI	CCTNAGG	2 cut(s)	456, 876
BaeGI	GKGCMC	1 cut(s)	813
BaeI	ACNNNNGTAYC	2 cut(s)	792, 825
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	2 cut(s)	448, 813
BccI	CCATC	2 cut(s)	739, 1027
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	2 cut(s)	156, 729
BciVI	GTATCC	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	617
BcoDI	GTCTC	4 cut(s)	208, 305, 545, 1028
BfaI	CTAG	1 cut(s)	642
BfmI	CTRYAG	3 cut(s)	246, 411, 997
BfuAI	ACCTGC	1 cut(s)	358
BfuI	GTATCC	1 cut(s)	493
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	3 cut(s)	156, 617, 729
Bme18I	GGWCC	1 cut(s)	737
BmeRI	GACNNNNNGTC	1 cut(s)	1041
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	2 cut(s)	163, 927
BmrFI	CCNGG	3 cut(s)	156, 617, 729
BmrI	ACTGGG	1 cut(s)	367
BmsI	GCATC	2 cut(s)	394, 559
BmuI	ACTGGG	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	1024
BpuMI	CCSGG	1 cut(s)	617
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	1028
BsaJI	CCNNGG	3 cut(s)	154, 373, 829
BsaWI	WCCGGW	1 cut(s)	813
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	7 cut(s)	155, 457, 508, 734, 835, 943, 989
Bse1I	ACTGG	1 cut(s)	362
Bse21I	CCTNAGG	2 cut(s)	456, 876
Bse3DI	GCAATG	1 cut(s)	893
BseBI	CCWGG	2 cut(s)	156, 729
BseDI	CCNNGG	3 cut(s)	154, 373, 829
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	7 cut(s)	155, 457, 508, 734, 835, 943, 989
BseMI	GCAATG	1 cut(s)	893
BseMII	CTCAG	3 cut(s)	138, 867, 991
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	2 cut(s)	220, 707
BseSI	GKGCMC	1 cut(s)	813
BseYI	CCCAGC	1 cut(s)	834
Bsh1236I	CGCG	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	448, 813
BsiSI	CCGG	4 cut(s)	185, 438, 617, 814
BslFI	GGGAC	2 cut(s)	31, 788
BslI	CCNNNNNNNGG	7 cut(s)	155, 457, 508, 734, 835, 943, 989
BsmAI	GTCTC	4 cut(s)	208, 305, 545, 1028
BsmBI	CGTCTC	1 cut(s)	545
BsmFI	GGGAC	2 cut(s)	31, 788
BsmI	GAATGC	1 cut(s)	1025
Bso31I	GGTCTC	1 cut(s)	1028
Bsp1286I	GDGCHC	2 cut(s)	448, 813
Bsp143I	GATC	3 cut(s)	101, 271, 511
BspACI	CCGC	4 cut(s)	15, 171, 826, 974
BspCNI	CTCAG	3 cut(s)	137, 868, 990
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	163, 927
BspMAI	CTGCAG	1 cut(s)	1001
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	1 cut(s)	519
BspTNI	GGTCTC	1 cut(s)	1028
BsrBI	CCGCTC	1 cut(s)	976
BsrDI	GCAATG	1 cut(s)	893
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	3 cut(s)	154, 373, 829
BssMI	GATC	3 cut(s)	101, 271, 511
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	373, 829
Bst2UI	CCWGG	2 cut(s)	156, 729
Bst4CI	ACNGT	4 cut(s)	247, 419, 495, 964
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	42, 850
BstDEI	CTNAG	5 cut(s)	124, 456, 741, 876, 977
BstF5I	GGATG	1 cut(s)	99
BstFNI	CGCG	1 cut(s)	15
BstKTI	GATC	3 cut(s)	104, 274, 514
BstMAI	GTCTC	4 cut(s)	208, 305, 545, 1028
BstMBI	GATC	3 cut(s)	101, 271, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 904
BstNI	CCWGG	2 cut(s)	156, 729
BstSCI	CCNGG	3 cut(s)	154, 615, 727
BstSFI	CTRYAG	3 cut(s)	246, 411, 997
BstSLI	GKGCMC	1 cut(s)	813
BstUI	CGCG	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	387
Bsu36I	CCTNAGG	2 cut(s)	456, 876
BsuI	GTATCC	1 cut(s)	493
BtsCI	GGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	1006
BtsIMutI	CAGTG	1 cut(s)	1006
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	42, 850
Cfr13I	GGNCC	1 cut(s)	737
CseI	GACGC	2 cut(s)	176, 527
Csp6I	GTAC	2 cut(s)	301, 682
CviAII	CATG	2 cut(s)	524, 806
CviQI	GTAC	2 cut(s)	301, 682
DdeI	CTNAG	5 cut(s)	124, 456, 741, 876, 977
DpnI	GATC	3 cut(s)	103, 273, 513
DpnII	GATC	3 cut(s)	101, 271, 511
DriI	GACNNNNNGTC	1 cut(s)	1041
Eam1105I	GACNNNNNGTC	1 cut(s)	1041
Eco130I	CCWWGG	2 cut(s)	373, 829
Eco31I	GGTCTC	1 cut(s)	1028
Eco47I	GGWCC	1 cut(s)	737
Eco57I	CTGAAG	1 cut(s)	420
Eco81I	CCTNAGG	2 cut(s)	456, 876
EcoO109I	RGGNCCY	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	1010
EcoRII	CCWGG	2 cut(s)	154, 727
EcoT14I	CCWWGG	2 cut(s)	373, 829
ErhI	CCWWGG	2 cut(s)	373, 829
Esp3I	CGTCTC	1 cut(s)	545
FaeI	CATG	2 cut(s)	527, 809
FaiI	YATR	8 cut(s)	338, 422, 525, 630, 695, 761, 807, 932
FaqI	GGGAC	2 cut(s)	31, 788
FatI	CATG	2 cut(s)	523, 805
FauI	CCCGC	1 cut(s)	8
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	642
GluI	GCNGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	838
HapII	CCGG	4 cut(s)	185, 438, 617, 814
HgaI	GACGC	2 cut(s)	176, 527
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	527, 809
HindIII	AAGCTT	1 cut(s)	604
HinfI	GANTC	2 cut(s)	379, 993
HpaII	CCGG	4 cut(s)	185, 438, 617, 814
HphI	GGTGA	2 cut(s)	96, 596
Hpy166II	GTNNAC	2 cut(s)	415, 811
Hpy188I	TCNGA	6 cut(s)	51, 127, 166, 400, 912, 980
Hpy188III	TCNNGA	1 cut(s)	99
Hpy8I	GTNNAC	2 cut(s)	415, 811
Hpy99I	CGWCG	2 cut(s)	170, 689
HpyAV	CCTTC	4 cut(s)	36, 502, 554, 907
HpyCH4III	ACNGT	4 cut(s)	247, 419, 495, 964
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	8 cut(s)	407, 662, 811, 822, 898, 969, 999, 1025
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 904
HpyF3I	CTNAG	5 cut(s)	124, 456, 741, 876, 977
HpySE526I	ACGT	1 cut(s)	516
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	527, 809
Kzo9I	GATC	3 cut(s)	101, 271, 511
LmnI	GCTCC	4 cut(s)	167, 187, 229, 527
LweI	GCATC	2 cut(s)	394, 559
MaeI	CTAG	1 cut(s)	642
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	2 cut(s)	517, 644
MalI	GATC	3 cut(s)	103, 273, 513
MbiI	CCGCTC	1 cut(s)	976
MboI	GATC	3 cut(s)	101, 271, 511
MboII	GAAGA	9 cut(s)	58, 96, 302, 312, 387, 413, 477, 664, 929
MfeI	CAATTG	2 cut(s)	330, 899
MhlI	GDGCHC	2 cut(s)	448, 813
MluCI	AATT	9 cut(s)	9, 62, 293, 330, 531, 657, 666, 899, 1010
MlyI	GAGTC	1 cut(s)	1002
MmeI	TCCRAC	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	924
MseI	TTAA	1 cut(s)	600
MspI	CCGG	4 cut(s)	185, 438, 617, 814
MspR9I	CCNGG	3 cut(s)	156, 617, 729
MunI	CAATTG	2 cut(s)	330, 899
Mva1269I	GAATGC	1 cut(s)	1025
MvaI	CCWGG	2 cut(s)	156, 729
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	443, 904
NciI	CCSGG	1 cut(s)	617
NdeII	GATC	3 cut(s)	101, 271, 511
NlaIII	CATG	2 cut(s)	527, 809
NlaIV	GGNNCC	2 cut(s)	163, 927
PaqCI	CACCTGC	1 cut(s)	358
PctI	GAATGC	1 cut(s)	1025
PdmI	GAANNNNTTC	1 cut(s)	924
PfeI	GAWTC	1 cut(s)	379
PfoI	TCCNGGA	1 cut(s)	727
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	1001
PpsI	GAGTC	1 cut(s)	1001
PpuMI	RGGWCCY	1 cut(s)	737
Psp5II	RGGWCCY	1 cut(s)	737
Psp6I	CCWGG	2 cut(s)	154, 727
PspFI	CCCAGC	1 cut(s)	834
PspGI	CCWGG	2 cut(s)	154, 727
PspN4I	GGNNCC	2 cut(s)	163, 927
PspPI	GGNCC	1 cut(s)	737
PspPPI	RGGWCCY	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	1001
RsaI	GTAC	2 cut(s)	302, 683
RsaNI	GTAC	2 cut(s)	301, 682
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	3 cut(s)	101, 271, 511
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	1 cut(s)	1002
ScrFI	CCNGG	3 cut(s)	156, 617, 729
SduI	GDGCHC	2 cut(s)	448, 813
SfaNI	GCATC	2 cut(s)	394, 559
SfcI	CTRYAG	3 cut(s)	246, 411, 997
SinI	GGWCC	1 cut(s)	737
SmlI	CTYRAG	1 cut(s)	1039
SmoI	CTYRAG	1 cut(s)	1039
Sse9I	AATT	9 cut(s)	9, 62, 293, 330, 531, 657, 666, 899, 1010
SsiI	CCGC	4 cut(s)	15, 171, 826, 974
SspMI	CTAG	1 cut(s)	642
StyD4I	CCNGG	3 cut(s)	154, 615, 727
StyI	CCWWGG	2 cut(s)	373, 829
TaaI	ACNGT	4 cut(s)	247, 419, 495, 964
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	1 cut(s)	1073
TasI	AATT	9 cut(s)	9, 62, 293, 330, 531, 657, 666, 899, 1010
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	1 cut(s)	1006
TspDTI	ATGAA	3 cut(s)	306, 603, 776
TspGWI	ACGGA	2 cut(s)	242, 702
TspRI	CASTG	1 cut(s)	1006
VneI	GTGCAC	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	4 cut(s)	9, 293, 666, 1010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	354
XmiI	GTMKAC	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	924
XspI	CTAG	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.