Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008365

Physical Location & Seq

Genomic Coordinates Reverse (-)

11863006 .. 11865479

Gene Structure 2474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0076900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGTTTTGTTTGTGCTGCAGTTTGGAATGTGGTTATCTGGGCGATTGATTGGAAGGGTTTCAAGGCACCAAAAGTTGGCGAAGATGGTGACAAGGATTCGTCTGAAAAATCAGAAAGGAGTGACAGTGATAGAGAAACTGAGGGCAAAACTGCAGTTGACATCAAGTACGTGGAACTTGCAACAATCCACGCTGGAAAACCGTTCACACAGAGGAACATCCTAAGGATCTACCCCAAGGGAAAACGAGTTTCCTCCTCGAATTACCAATCGCATGTTGGGTGGGTGCATGGAGCTCAAATAGTTGGGTTTAATATGCAGTCAGCTTTGGAGTTTCATGAAATCTTATTGGAACCTAATAACATGTCAATGGCAGAGATTGATAAGAAATATAACCCAATCTCTGGATATAAAATTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0000703 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006289 GO:0006296 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009295 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0016787 GO:0016798 GO:0016799 GO:0018022 GO:0018193 GO:0018205 GO:0019104 GO:0019538 GO:0030054 GO:0032259 GO:0033554 GO:0033683 GO:0034641 GO:0036211 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0090305 GO:0140096 GO:0140097 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

140

Amino Acids

15.75

Weight (kDa)

6.91

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC-Y	PF00387	69 - 109	5.8e-11	Phosphatidylinositol-specific phospholipase C, Y domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05900 AT1G05900 AT2G31450 AT2G31450
fragaria_vesca	FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690
malus_domestica	MD04G1007400.v1.1
prunus_persica	Prupe.1G191600_v2.0.a1 Prupe.1G191600_v2.0.a1
pyrus_communis	pycom04g03440
rosa_chinensis	RchiOBHm_Chr4g0407021
rosa_laevigata	RLG00000008743
rosa_multiflora	Rmu_co8205520.1_g000001
rosa_rugosa	Rorug04G0076900
rosa_samantha	Rh4AG142100 Rh4BG139300 Rh4CG148700 Rh4DG136300
rosa_wichuraiana	Rw4G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccB7I	CCANNNNNTGG	2 cut(s)	77, 404
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	414
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	77, 404
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	2 cut(s)	296, 326
AluI	AGCT	2 cut(s)	296, 326
Alw21I	GWGCWC	1 cut(s)	298
AlwI	GGATC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	101
AxyI	CCTNAGG	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	18, 153
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmiI	GGNNCC	2 cut(s)	69, 354
BsaAI	YACGTR	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 404
Bse21I	CCTNAGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	2 cut(s)	77, 404
BseMII	CTCAG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	4
BshNI	GGYRCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	77, 404
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	69, 354
BspMAI	CTGCAG	2 cut(s)	22, 157
BspPI	GGATC	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	128, 204
BstBAI	YACGTR	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	141, 224
BstF5I	GGATG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstNSI	RCATGY	2 cut(s)	278, 367
BstSFI	CTRYAG	2 cut(s)	18, 153
BstV1I	GCAGC	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
Bsu36I	CCTNAGG	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	133
CciI	TCATGA	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	4 cut(s)	275, 290, 338, 364
CviJI	RGCY	2 cut(s)	296, 326
CviKI_1	RGCY	2 cut(s)	296, 326
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	2 cut(s)	141, 224
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	296
Eco81I	CCTNAGG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	4 cut(s)	278, 293, 341, 367
FaiI	YATR	8 cut(s)	276, 291, 317, 339, 365, 393, 411, 421
FatI	CATG	4 cut(s)	274, 289, 337, 363
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	18
Hin1II	CATG	4 cut(s)	278, 293, 341, 367
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	98
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	2 cut(s)	160, 207
Hpy188I	TCNGA	2 cut(s)	106, 115
Hpy188III	TCNNGA	2 cut(s)	338, 405
Hpy8I	GTNNAC	2 cut(s)	160, 207
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	2 cut(s)	128, 204
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	20, 155, 182, 289, 319
HpyF3I	CTNAG	2 cut(s)	141, 224
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	4 cut(s)	278, 293, 341, 367
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	3 cut(s)	25, 180, 390
Lsp1109I	GCAGC	1 cut(s)	4
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	89, 122
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	1 cut(s)	95
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	2 cut(s)	262, 414
MnlI	CCTC	4 cut(s)	136, 207, 265, 268
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	368
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	4 cut(s)	278, 293, 341, 367
NlaIV	GGNNCC	2 cut(s)	69, 354
NmuCI	GTSAC	2 cut(s)	89, 122
NspI	RCATGY	2 cut(s)	278, 367
PagI	TCATGA	1 cut(s)	337
PciI	ACATGT	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	98
PflMI	CCANNNNNTGG	2 cut(s)	77, 404
PkrI	GCNGC	1 cut(s)	19
Ppu21I	YACGTR	1 cut(s)	172
PscI	ACATGT	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	69, 354
PstI	CTGCAG	2 cut(s)	22, 157
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	4 cut(s)	174, 298, 328, 358
SfcI	CTRYAG	2 cut(s)	18, 153
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	262, 414
SstI	GAGCTC	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	128, 204
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	262, 414
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	2 cut(s)	89, 122
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	89, 122
TspDTI	ATGAA	2 cut(s)	326, 354
TspRI	CASTG	1 cut(s)	133
Van91I	CCANNNNNTGG	2 cut(s)	77, 404
XapI	RAATTY	1 cut(s)	414
XceI	RCATGY	2 cut(s)	278, 367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.