Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008365

Physical Location & Seq

Genomic Coordinates Reverse (-)

13401132 .. 13404222

Gene Structure 3091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGATTCTTCTGGTTAACGGAGGAGCCGCTACTTCAATCCATCCCAACGCCGCTCGATTTTATCGAATTGGGACCATGAGTCGCCAAATTCACGGAGCTGTATCTTCTTCTAAGCACATCTCCTTAAAAACCCAACACCCCCTCTCAGATTCCAACTCAGAACTAGCCTATGGAGCTTCTGGGTCGGAGACTCGAGTGTATACCCGGAAAAAAAGGCTAAAGCAGGAACCTTTTGAGCCTCTGGAGAAATATTCCGGCAAAGGAGTCAATACCCACAAACTGTGTGGTTTACCCGATATAGAAGATTTTGCTTACAAAAAGACTATTGGATCTCCTTCATCTAGCAGGTCAACGGAAACTAGCATCACTGTGACTTCAGTCAAAACAGCAGGATATCCGCCTGAAAACTGGGTCGAAGTGCTCGAGGGTATTCGTCAAATGAGATCTTCTGAAGATGCACCAGTTGATTCTATGGGATGTGATAAAGCCGGAAGCTTTCTACCTCCCACGGAAAGAAGATTTGCTGTCTTGCTAGGAGCACTTCTTTCAAGTCAGACAAAAGATCAAGTTAATAACGCGGCAATACATCGTCTTCATCAAAACGGCCTTCTTACTCCCGAAGCGGTTGACAAAGCTGATGAATCAACCATAAAAGAATTGATCTATCCGGTTGGATTTTATACAAGGAAGGCTACCTATATGAAGAAAATAGCTAGAATTTGTCTAGTGAAATATGACGGAGACATTCCAAGCTCTTTGGACGACCTGCTGTCTCTTCCAGGGATTGGTCCCAAGATGGCCCATCTGATTCTGCATATAGCATGGAATGATGTCCAAGGCATATGTGTAGACACACATGTGCATCGCATTTGCAATCGACTTGGTTGGGTGTCTCGTCCAGGAACCAAACAGAAAACTACATCTCCAGAGGAAACAAGAGTAGCTTTGCAACAATGGCTTCCAAAGGAAGAATGGGTTGCCATTAACCCGCTTTTGGTGGGGTTTGGACAAATGATTTGCACACCAATAAGACCACGCTGCGAAGCCTGCAGTGTCAGTAAGCTTTGTCCTGCTGCATTCAAAGAAACATCAAGCCCATCTTCCAAGTTGAAGAAATCTAACCGAAGCAAAGAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0000703 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006289 GO:0006296 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009295 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0016787 GO:0016798 GO:0016799 GO:0018022 GO:0018193 GO:0018205 GO:0019104 GO:0019538 GO:0030054 GO:0032259 GO:0033554 GO:0033683 GO:0034641 GO:0036211 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0090305 GO:0140096 GO:0140097 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

379

Amino Acids

41.73

Weight (kDa)

9.27

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	177 - 304	4.5e-23	HhH-GPD superfamily base excision DNA repair protein
HHH	PF00633	242 - 270	7e-09	Helix-hairpin-helix motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05900 AT1G05900 AT2G31450 AT2G31450
fragaria_vesca	FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690
malus_domestica	MD04G1007400.v1.1
prunus_persica	Prupe.1G191600_v2.0.a1 Prupe.1G191600_v2.0.a1
pyrus_communis	pycom04g03440
rosa_chinensis	RchiOBHm_Chr4g0407021
rosa_laevigata	RLG00000008743
rosa_multiflora	Rmu_co8205520.1_g000001
rosa_rugosa	Rorug04G0076900
rosa_samantha	Rh4AG142100 Rh4BG139300 Rh4CG148700 Rh4DG136300
rosa_wichuraiana	Rw4G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	336, 774
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccBSI	CCGCTC	1 cut(s)	53
AccI	GTMKAC	2 cut(s)	200, 849
AccII	CGCG	1 cut(s)	578
AciI	CCGC	6 cut(s)	27, 51, 398, 578, 623, 989
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	2 cut(s)	87, 717
AcuI	CTGAAG	2 cut(s)	360, 471
AfiI	CCNNNNNNNGG	2 cut(s)	785, 994
AflIII	ACRYGT	1 cut(s)	856
AgsI	TTSAA	4 cut(s)	36, 549, 1081, 1111
AhdI	GACNNNNNGTC	2 cut(s)	78, 769
AjnI	CCWGG	2 cut(s)	778, 898
AleI	CACNNNNGTG	1 cut(s)	857
AluBI	AGCT	8 cut(s)	98, 176, 495, 635, 713, 753, 944, 1063
AluI	AGCT	8 cut(s)	98, 176, 495, 635, 713, 753, 944, 1063
Alw21I	GWGCWC	2 cut(s)	423, 541
Alw26I	GTCTC	4 cut(s)	182, 735, 777, 897
AlwI	GGATC	1 cut(s)	337
Ama87I	CYCGRG	2 cut(s)	192, 422
AoxI	GGCC	2 cut(s)	604, 798
ApeKI	GCWGC	2 cut(s)	1038, 1073
ApoI	RAATTY	2 cut(s)	87, 717
ArsI	GACNNNNNNTTYG	2 cut(s)	999, 1031
AspS9I	GGNCC	3 cut(s)	72, 788, 799
AsuC2I	CCSGG	1 cut(s)	205
AvaI	CYCGRG	2 cut(s)	192, 422
AvaII	GGWCC	2 cut(s)	72, 788
BbsI	GAAGAC	1 cut(s)	584
Bbv12I	GWGCWC	2 cut(s)	423, 541
BbvI	GCAGC	2 cut(s)	1025, 1060
BccI	CCATC	4 cut(s)	48, 790, 810, 1105
BceAI	ACGGC	1 cut(s)	619
BciT130I	CCWGG	2 cut(s)	780, 900
BcnI	CCSGG	1 cut(s)	205
BcoDI	GTCTC	4 cut(s)	182, 735, 777, 897
BfaI	CTAG	6 cut(s)	164, 342, 360, 533, 714, 725
BfmI	CTRYAG	1 cut(s)	1048
BfuAI	ACCTGC	2 cut(s)	336, 774
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	5 cut(s)	27, 51, 579, 1039, 1074
BlsI	GCNGC	5 cut(s)	28, 52, 580, 1040, 1075
Bme1390I	CCNGG	3 cut(s)	205, 780, 900
Bme18I	GGWCC	2 cut(s)	72, 788
BmeRI	GACNNNNNGTC	2 cut(s)	78, 769
BmeT110I	CYCGRG	2 cut(s)	192, 422
BmgT120I	GGNCC	3 cut(s)	72, 788, 799
BmiI	GGNNCC	5 cut(s)	25, 73, 228, 790, 904
BmrFI	CCNGG	3 cut(s)	205, 780, 900
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	3 cut(s)	372, 445, 871
BmuI	ACTGGG	1 cut(s)	418
BoxI	GACNNNNGTC	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	584
BpmI	CTGGAG	2 cut(s)	263, 909
BpuMI	CCSGG	1 cut(s)	205
BsaJI	CCNNGG	3 cut(s)	507, 779, 835
BsaWI	WCCGGW	1 cut(s)	667
BsaXI	ACNNNNNCTCC	2 cut(s)	907, 937
Bsc4I	CCNNNNNNNGG	2 cut(s)	785, 994
Bse1I	ACTGG	2 cut(s)	413, 461
BseBI	CCWGG	2 cut(s)	780, 900
BseDI	CCNNGG	3 cut(s)	507, 779, 835
BseGI	GGATG	2 cut(s)	40, 482
BseLI	CCNNNNNNNGG	2 cut(s)	785, 994
BseMII	CTCAG	2 cut(s)	159, 171
BseNI	ACTGG	2 cut(s)	413, 461
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	1025, 1060
Bsh1236I	CGCG	1 cut(s)	578
BshFI	GGCC	2 cut(s)	606, 800
BsiHKAI	GWGCWC	2 cut(s)	423, 541
BsiHKCI	CYCGRG	2 cut(s)	192, 422
BsiSI	CCGG	4 cut(s)	205, 255, 489, 668
BslFI	GGGAC	2 cut(s)	85, 774
BslI	CCNNNNNNNGG	2 cut(s)	785, 994
BsmAI	GTCTC	4 cut(s)	182, 735, 777, 897
BsmFI	GGGAC	2 cut(s)	85, 774
BsmI	GAATGC	1 cut(s)	1076
BsnI	GGCC	2 cut(s)	606, 800
BsoBI	CYCGRG	2 cut(s)	192, 422
Bsp1286I	GDGCHC	2 cut(s)	423, 541
Bsp143I	GATC	4 cut(s)	329, 443, 562, 660
BspACI	CCGC	6 cut(s)	27, 51, 398, 578, 623, 989
BspANI	GGCC	2 cut(s)	606, 800
BspCNI	CTCAG	2 cut(s)	158, 170
BspFNI	CGCG	1 cut(s)	578
BspLI	GGNNCC	5 cut(s)	25, 73, 228, 790, 904
BspMAI	CTGCAG	1 cut(s)	1052
BspMI	ACCTGC	2 cut(s)	336, 774
BspPI	GGATC	1 cut(s)	337
BsrBI	CCGCTC	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	413, 461
BssECI	CCNNGG	3 cut(s)	507, 779, 835
BssMI	GATC	4 cut(s)	329, 443, 562, 660
BssNAI	GTATAC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	835
Bst1107I	GTATAC	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	780, 900
Bst4CI	ACNGT	2 cut(s)	282, 370
Bst6I	CTCTTC	1 cut(s)	780
BstC8I	GCNNGC	1 cut(s)	1048
BstDEI	CTNAG	3 cut(s)	111, 145, 157
BstDSI	CCRYGG	1 cut(s)	507
BstF5I	GGATG	2 cut(s)	40, 482
BstFNI	CGCG	1 cut(s)	578
BstKTI	GATC	4 cut(s)	332, 446, 565, 663
BstMAI	GTCTC	4 cut(s)	182, 735, 777, 897
BstMBI	GATC	4 cut(s)	329, 443, 562, 660
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 955, 1047
BstNI	CCWGG	2 cut(s)	780, 900
BstNSI	RCATGY	1 cut(s)	860
BstPAI	GACNNNNGTC	1 cut(s)	377
BstSCI	CCNGG	3 cut(s)	203, 778, 898
BstSFI	CTRYAG	1 cut(s)	1048
BstUI	CGCG	1 cut(s)	578
BstV1I	GCAGC	2 cut(s)	1025, 1060
BstV2I	GAAGAC	1 cut(s)	584
BstX2I	RGATCY	2 cut(s)	329, 443
BstYI	RGATCY	2 cut(s)	329, 443
BstZ17I	GTATAC	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	606, 800
BtgI	CCRYGG	1 cut(s)	507
BtgZI	GCGATG	1 cut(s)	848
BtsCI	GGATG	2 cut(s)	40, 482
BtsI	GCAGTG	1 cut(s)	1057
BtsIMutI	CAGTG	2 cut(s)	366, 1057
BveI	ACCTGC	2 cut(s)	336, 774
Cac8I	GCNNGC	1 cut(s)	1048
Cfr13I	GGNCC	3 cut(s)	72, 788, 799
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	4 cut(s)	76, 822, 857, 1137
DdeI	CTNAG	3 cut(s)	111, 145, 157
DpnI	GATC	4 cut(s)	331, 445, 564, 662
DpnII	GATC	4 cut(s)	329, 443, 562, 660
DriI	GACNNNNNGTC	2 cut(s)	78, 769
Eam1104I	CTCTTC	1 cut(s)	780
Eam1105I	GACNNNNNGTC	2 cut(s)	78, 769
EarI	CTCTTC	1 cut(s)	780
EciI	GGCGGA	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	835
Eco32I	GATATC	1 cut(s)	395
Eco47I	GGWCC	2 cut(s)	72, 788
Eco57I	CTGAAG	2 cut(s)	360, 471
Eco88I	CYCGRG	2 cut(s)	192, 422
EcoRII	CCWGG	2 cut(s)	778, 898
EcoRV	GATATC	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	835
ErhI	CCWWGG	1 cut(s)	835
FaeI	CATG	4 cut(s)	79, 825, 860, 1140
FalI	AAGNNNNNCTT	4 cut(s)	928, 960, 1084, 1116
FaqI	GGGAC	2 cut(s)	85, 774
FatI	CATG	4 cut(s)	75, 821, 856, 1136
FauI	CCCGC	1 cut(s)	996
FauNDI	CATATG	1 cut(s)	842
FblI	GTMKAC	2 cut(s)	200, 849
Fnu4HI	GCNGC	5 cut(s)	27, 51, 579, 1039, 1074
FokI	GGATG	2 cut(s)	27, 489
Fsp4HI	GCNGC	5 cut(s)	27, 51, 579, 1039, 1074
FspBI	CTAG	6 cut(s)	164, 342, 360, 533, 714, 725
GluI	GCNGC	5 cut(s)	27, 51, 579, 1039, 1074
GsuI	CTGGAG	2 cut(s)	263, 909
HaeIII	GGCC	2 cut(s)	606, 800
HapII	CCGG	4 cut(s)	205, 255, 489, 668
Hin1II	CATG	4 cut(s)	79, 825, 860, 1140
HincII	GTYRAC	3 cut(s)	16, 351, 628
HindII	GTYRAC	3 cut(s)	16, 351, 628
HindIII	AAGCTT	2 cut(s)	493, 1061
HinfI	GANTC	8 cut(s)	4, 79, 149, 190, 264, 467, 641, 808
HpaI	GTTAAC	1 cut(s)	16
HpaII	CCGG	4 cut(s)	205, 255, 489, 668
Hpy166II	GTNNAC	6 cut(s)	16, 201, 290, 351, 628, 850
Hpy188I	TCNGA	6 cut(s)	148, 160, 187, 451, 555, 807
Hpy188III	TCNNGA	3 cut(s)	242, 617, 926
Hpy8I	GTNNAC	6 cut(s)	16, 201, 290, 351, 628, 850
HpyAV	CCTTC	3 cut(s)	345, 617, 682
HpyCH4III	ACNGT	2 cut(s)	282, 370
HpyCH4V	TGCA	8 cut(s)	458, 814, 862, 873, 949, 1020, 1050, 1076
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 955, 1047
HpyF3I	CTNAG	3 cut(s)	111, 145, 157
Hsp92II	CATG	4 cut(s)	79, 825, 860, 1140
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	329, 443, 562, 660
LmnI	GCTCC	4 cut(s)	23, 95, 173, 536
Lsp1109I	GCAGC	2 cut(s)	1025, 1060
LweI	GCATC	3 cut(s)	372, 445, 871
MaeI	CTAG	6 cut(s)	164, 342, 360, 533, 714, 725
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	4 cut(s)	331, 445, 564, 662
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	4 cut(s)	329, 443, 562, 660
MflI	RGATCY	2 cut(s)	329, 443
MhlI	GDGCHC	2 cut(s)	423, 541
MluCI	AATT	4 cut(s)	66, 87, 656, 717
MlyI	GAGTC	3 cut(s)	88, 184, 273
MmeI	TCCRAC	3 cut(s)	165, 177, 652
MnlI	CCTC	6 cut(s)	14, 152, 249, 418, 513, 922
MseI	TTAA	4 cut(s)	15, 125, 570, 984
MslI	CAYNNNNRTG	2 cut(s)	368, 857
MspI	CCGG	4 cut(s)	205, 255, 489, 668
MspR9I	CCNGG	3 cut(s)	205, 780, 900
Mva1269I	GAATGC	1 cut(s)	1076
MvaI	CCWGG	2 cut(s)	780, 900
MvnI	CGCG	1 cut(s)	578
MwoI	GCNNNNNNNGC	3 cut(s)	173, 955, 1047
NciI	CCSGG	1 cut(s)	205
NdeI	CATATG	1 cut(s)	842
NdeII	GATC	4 cut(s)	329, 443, 562, 660
NlaIII	CATG	4 cut(s)	79, 825, 860, 1140
NlaIV	GGNNCC	5 cut(s)	25, 73, 228, 790, 904
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	860
OliI	CACNNNNGTG	1 cut(s)	857
PaeR7I	CTCGAG	2 cut(s)	192, 422
PciI	ACATGT	1 cut(s)	856
PcsI	WCGNNNNNNNCGW	2 cut(s)	61, 420
PctI	GAATGC	1 cut(s)	1076
PfeI	GAWTC	5 cut(s)	4, 149, 467, 641, 808
PflMI	CCANNNNNTGG	1 cut(s)	785
PfoI	TCCNGGA	1 cut(s)	898
PkrI	GCNGC	5 cut(s)	28, 52, 580, 1040, 1075
PleI	GAGTC	3 cut(s)	87, 184, 272
PpsI	GAGTC	3 cut(s)	87, 184, 272
PscI	ACATGT	1 cut(s)	856
PshAI	GACNNNNGTC	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	778, 898
PspGI	CCWGG	2 cut(s)	778, 898
PspN4I	GGNNCC	5 cut(s)	25, 73, 228, 790, 904
PspPI	GGNCC	3 cut(s)	72, 788, 799
PspXI	VCTCGAGB	2 cut(s)	192, 422
PstI	CTGCAG	1 cut(s)	1052
PsuI	RGATCY	2 cut(s)	329, 443
RseI	CAYNNNNRTG	2 cut(s)	368, 857
SaqAI	TTAA	4 cut(s)	15, 125, 570, 984
SatI	GCNGC	5 cut(s)	27, 51, 579, 1039, 1074
Sau3AI	GATC	4 cut(s)	329, 443, 562, 660
Sau96I	GGNCC	3 cut(s)	72, 788, 799
SchI	GAGTC	3 cut(s)	88, 184, 273
ScrFI	CCNGG	3 cut(s)	205, 780, 900
SduI	GDGCHC	2 cut(s)	423, 541
SfaNI	GCATC	3 cut(s)	372, 445, 871
SfcI	CTRYAG	1 cut(s)	1048
Sfr274I	CTCGAG	2 cut(s)	192, 422
SinI	GGWCC	2 cut(s)	72, 788
SlaI	CTCGAG	2 cut(s)	192, 422
SmiMI	CAYNNNNRTG	2 cut(s)	368, 857
SmlI	CTYRAG	2 cut(s)	192, 422
SmoI	CTYRAG	2 cut(s)	192, 422
Sse9I	AATT	4 cut(s)	66, 87, 656, 717
SsiI	CCGC	6 cut(s)	27, 51, 398, 578, 623, 989
SspI	AATATT	1 cut(s)	251
SspMI	CTAG	6 cut(s)	164, 342, 360, 533, 714, 725
StyD4I	CCNGG	3 cut(s)	203, 778, 898
StyI	CCWWGG	1 cut(s)	835
TaaI	ACNGT	2 cut(s)	282, 370
TaqI	TCGA	6 cut(s)	55, 64, 193, 414, 423, 877
TasI	AATT	4 cut(s)	66, 87, 656, 717
TauI	GCSGC	3 cut(s)	29, 53, 581
TfiI	GAWTC	5 cut(s)	4, 149, 467, 641, 808
Tru1I	TTAA	4 cut(s)	15, 125, 570, 984
Tru9I	TTAA	4 cut(s)	15, 125, 570, 984
TscAI	CASTG	2 cut(s)	373, 1057
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	1038, 1073
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	4 cut(s)	327, 584, 654, 716
TspGWI	ACGGA	5 cut(s)	33, 108, 368, 524, 753
TspRI	CASTG	2 cut(s)	373, 1057
Van91I	CCANNNNNTGG	1 cut(s)	785
VpaK11BI	GGWCC	2 cut(s)	72, 788
XapI	RAATTY	2 cut(s)	87, 717
XceI	RCATGY	1 cut(s)	860
XcmI	CCANNNNNNNNNTGG	2 cut(s)	281, 969
XhoI	CTCGAG	2 cut(s)	192, 422
XmiI	GTMKAC	2 cut(s)	200, 849
XspI	CTAG	6 cut(s)	164, 342, 360, 533, 714, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.