Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008365

Physical Location & Seq

Genomic Coordinates Forward (+)

32788494 .. 32793747

Gene Structure 5254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG148700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTTCCAAATTCGCGCGACAAGGCCGTCCTCTCTTACCAAAACACAATTCTTCAACACCTACACAAGAAGAACAAGGATGTCCAAATCACCAACACTCTCTGCCAACTCAGACCCAAACCCAAACCCAGGAGGCTCCGACGCCGCCGTTTCAAAGCCGGAGCTTCGTGTTTTTGCGAGGAGAAAGAGACTGAAAATGACGGAGCAACAGCTTATTACTGTAGAAGCAAAACCCCACAAACTTGATCTCCTACCTGACATTGAAGAATTTGGGTACAGAAATGAGACTTCTTCTTCTTATTCAATTGACATAGGTAAGCCACCTGCTAACTGGGAGAAAGTCCTCCAAGGGATTCGCAAAATGAGGTCTTCTGAAGATGCACCTGTAGACAGTATGGGTTGTGAGAAAGCCGGAAGTGCTCTCCCTCCTAAGGAGAGAAGATTCGCTGTCTTGGTATCCTCCCTACTGTCAAGCCAAACGAAGGATCAAGTTACTCATGGAGCAATTCAGCGTCTCCTTCAGAATGGTTTGCTCTCTGCCGATGCCATTGACAAAGGTGATGAAGCAACCATTAAAAGCTTGATTTACCCGGTTGGCTTTTATACAAGAAAGGCTAGTAACTTGAAGAAAATTGCAAACATTTGTCTTGTCAAGTACAATGGAGATATACCTAGCTCATTGGAGGAACTCCTCTCACTTCCAGGAATAGGTCCTAAGATGGCTCATTTGGTAGGGCTAGTTTCGAACTTATTCAATTTAGCATGCCACCTTAGGTTCTCTAAATATTCCGGTATATGGTTCTTAGGTTATGAATGTCGCTTGGGACAATGTTCAAGGGATTTGTGTAGATACCCATGTGCACCGGATTTGCAACCGCCTTGGCTGGGTATCAAGGGCAGGCAAAAAACAGAAAACATCAAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0000703 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006289 GO:0006296 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009295 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0016787 GO:0016798 GO:0016799 GO:0018022 GO:0018193 GO:0018205 GO:0019104 GO:0019538 GO:0030054 GO:0032259 GO:0033554 GO:0033683 GO:0034641 GO:0036211 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0090305 GO:0140096 GO:0140097 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

308

Amino Acids

34.29

Weight (kDa)

9.6

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	152 - 232	1.1e-12	HhH-GPD superfamily base excision DNA repair protein
HHH	PF00633	218 - 243	2.4e-08	Helix-hairpin-helix motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05900 AT1G05900 AT2G31450 AT2G31450
fragaria_vesca	FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690
malus_domestica	MD04G1007400.v1.1
prunus_persica	Prupe.1G191600_v2.0.a1 Prupe.1G191600_v2.0.a1
pyrus_communis	pycom04g03440
rosa_chinensis	RchiOBHm_Chr4g0407021
rosa_laevigata	RLG00000008743
rosa_multiflora	Rmu_co8205520.1_g000001
rosa_rugosa	Rorug04G0076900
rosa_samantha	Rh4AG142100 Rh4BG139300 Rh4CG148700 Rh4DG136300
rosa_wichuraiana	Rw4G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
AasI	GACNNNNNNGTC	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	2 cut(s)	15, 17
AciI	CCGC	2 cut(s)	144, 875
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	2 cut(s)	9, 266
AcuI	CTGAAG	2 cut(s)	393, 503
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	2 cut(s)	275, 656
AfiI	CCNNNNNNNGG	6 cut(s)	128, 430, 481, 707, 795, 884
AgsI	TTSAA	7 cut(s)	55, 153, 263, 303, 625, 754, 834
AjnI	CCWGG	2 cut(s)	127, 700
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AluBI	AGCT	4 cut(s)	163, 211, 579, 675
AluI	AGCT	4 cut(s)	163, 211, 579, 675
Alw21I	GWGCWC	2 cut(s)	421, 862
Alw26I	GTCTC	3 cut(s)	181, 278, 518
Alw44I	GTGCAC	1 cut(s)	858
AlwI	GGATC	1 cut(s)	492
AoxI	GGCC	1 cut(s)	23
ApaLI	GTGCAC	1 cut(s)	858
ApoI	RAATTY	2 cut(s)	9, 266
Asp700I	GAANNNNTTC	1 cut(s)	749
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	710
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	2 cut(s)	81, 569
AsuII	TTCGAA	1 cut(s)	743
AvaII	GGWCC	1 cut(s)	710
AxyI	CCTNAGG	2 cut(s)	429, 770
BaeGI	GKGCMC	1 cut(s)	862
BaeI	ACNNNNGTAYC	2 cut(s)	841, 874
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	2 cut(s)	421, 862
BccI	CCATC	1 cut(s)	712
BceAI	ACGGC	2 cut(s)	10, 131
BciT130I	CCWGG	2 cut(s)	129, 702
BciVI	GTATCC	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	3 cut(s)	181, 278, 518
BfaI	CTAG	3 cut(s)	615, 672, 737
BfmI	CTRYAG	2 cut(s)	219, 384
BfuAI	ACCTGC	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	466
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	3 cut(s)	129, 590, 702
Bme18I	GGWCC	1 cut(s)	710
BmgT120I	GGNCC	1 cut(s)	710
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	3 cut(s)	129, 590, 702
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	2 cut(s)	367, 532
BmuI	ACTGGG	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	743
BpuMI	CCSGG	1 cut(s)	590
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	127, 346, 878
BsaWI	WCCGGW	2 cut(s)	788, 862
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	6 cut(s)	128, 430, 481, 707, 795, 884
Bse1I	ACTGG	1 cut(s)	335
Bse21I	CCTNAGG	2 cut(s)	429, 770
BseBI	CCWGG	2 cut(s)	129, 702
BseDI	CCNNGG	3 cut(s)	127, 346, 878
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	6 cut(s)	128, 430, 481, 707, 795, 884
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	2 cut(s)	193, 680
BseSI	GKGCMC	1 cut(s)	862
BseYI	CCCAGC	1 cut(s)	883
Bsh1236I	CGCG	2 cut(s)	15, 17
BshFI	GGCC	1 cut(s)	25
BsiHKAI	GWGCWC	2 cut(s)	421, 862
BsiSI	CCGG	5 cut(s)	158, 411, 590, 789, 863
BslFI	GGGAC	1 cut(s)	837
BslI	CCNNNNNNNGG	6 cut(s)	128, 430, 481, 707, 795, 884
BsmAI	GTCTC	3 cut(s)	181, 278, 518
BsmBI	CGTCTC	1 cut(s)	518
BsmFI	GGGAC	1 cut(s)	837
BsnI	GGCC	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	743
Bsp1286I	GDGCHC	2 cut(s)	421, 862
Bsp143I	GATC	2 cut(s)	244, 484
BspACI	CCGC	2 cut(s)	144, 875
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	1 cut(s)	122
BspFNI	CGCG	2 cut(s)	15, 17
BspLI	GGNNCC	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	1 cut(s)	492
BspT104I	TTCGAA	1 cut(s)	743
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	127, 346, 878
BssMI	GATC	2 cut(s)	244, 484
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	2 cut(s)	346, 878
Bst2UI	CCWGG	2 cut(s)	129, 702
Bst4CI	ACNGT	3 cut(s)	220, 392, 468
BstACI	GRCGYC	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	743
BstC8I	GCNNGC	2 cut(s)	763, 899
BstDEI	CTNAG	5 cut(s)	109, 429, 714, 770, 802
BstF5I	GGATG	1 cut(s)	84
BstFNI	CGCG	2 cut(s)	15, 17
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	247, 487
BstMAI	GTCTC	3 cut(s)	181, 278, 518
BstMBI	GATC	2 cut(s)	244, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	2 cut(s)	129, 702
BstNSI	RCATGY	1 cut(s)	765
BstSCI	CCNGG	3 cut(s)	127, 588, 700
BstSFI	CTRYAG	2 cut(s)	219, 384
BstSLI	GKGCMC	1 cut(s)	862
BstUI	CGCG	2 cut(s)	15, 17
BstV2I	GAAGAC	1 cut(s)	360
Bsu36I	CCTNAGG	2 cut(s)	429, 770
BsuI	GTATCC	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	763, 899
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	710
CseI	GACGC	2 cut(s)	149, 500
Csp6I	GTAC	2 cut(s)	274, 655
CviAII	CATG	3 cut(s)	497, 762, 855
CviQI	GTAC	2 cut(s)	274, 655
DdeI	CTNAG	5 cut(s)	109, 429, 714, 770, 802
DpnI	GATC	2 cut(s)	246, 486
DpnII	GATC	2 cut(s)	244, 484
DrdI	GACNNNNNNGTC	1 cut(s)	25
DseDI	GACNNNNNNGTC	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	346, 878
Eco47I	GGWCC	1 cut(s)	710
Eco57I	CTGAAG	2 cut(s)	393, 503
Eco81I	CCTNAGG	2 cut(s)	429, 770
EcoO109I	RGGNCCY	1 cut(s)	710
EcoRII	CCWGG	2 cut(s)	127, 700
EcoT14I	CCWWGG	2 cut(s)	346, 878
ErhI	CCWWGG	2 cut(s)	346, 878
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	3 cut(s)	500, 765, 858
FaqI	GGGAC	1 cut(s)	837
FatI	CATG	3 cut(s)	496, 761, 854
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	3 cut(s)	615, 672, 737
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	144
GsaI	CCCAGC	1 cut(s)	887
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	5 cut(s)	158, 411, 590, 789, 863
HgaI	GACGC	2 cut(s)	149, 500
HhaI	GCGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	500, 765, 858
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	2 cut(s)	352, 441
HpaII	CCGG	5 cut(s)	158, 411, 590, 789, 863
HphI	GGTGA	2 cut(s)	81, 569
Hpy166II	GTNNAC	2 cut(s)	388, 860
Hpy188I	TCNGA	4 cut(s)	112, 139, 373, 522
Hpy8I	GTNNAC	2 cut(s)	388, 860
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	475, 527
HpyCH4III	ACNGT	3 cut(s)	220, 392, 468
HpyCH4V	TGCA	4 cut(s)	380, 635, 860, 871
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	5 cut(s)	109, 429, 714, 770, 802
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	500, 765, 858
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	244, 484
LmnI	GCTCC	4 cut(s)	140, 160, 202, 500
LweI	GCATC	2 cut(s)	367, 532
MaeI	CTAG	3 cut(s)	615, 672, 737
MaeIII	GTNAC	2 cut(s)	490, 617
MalI	GATC	2 cut(s)	246, 486
MboI	GATC	2 cut(s)	244, 484
MboII	GAAGA	9 cut(s)	43, 81, 275, 282, 285, 360, 386, 450, 637
MfeI	CAATTG	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	421, 862
MluCI	AATT	7 cut(s)	9, 47, 266, 303, 504, 630, 754
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	9 cut(s)	40, 125, 171, 353, 357, 435, 469, 676, 701
MroXI	GAANNNNTTC	1 cut(s)	749
MseI	TTAA	1 cut(s)	573
MspI	CCGG	5 cut(s)	158, 411, 590, 789, 863
MspR9I	CCNGG	3 cut(s)	129, 590, 702
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	2 cut(s)	129, 702
MvnI	CGCG	2 cut(s)	15, 17
MwoI	GCNNNNNNNGC	1 cut(s)	416
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	2 cut(s)	244, 484
NlaIII	CATG	3 cut(s)	500, 765, 858
NlaIV	GGNNCC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	765
NspV	TTCGAA	1 cut(s)	743
PaeI	GCATGC	1 cut(s)	765
PaqCI	CACCTGC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	2 cut(s)	352, 441
PfoI	TCCNGGA	1 cut(s)	700
PkrI	GCNGC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	710
Psp5II	RGGWCCY	1 cut(s)	710
Psp6I	CCWGG	2 cut(s)	127, 700
PspFI	CCCAGC	1 cut(s)	883
PspGI	CCWGG	2 cut(s)	127, 700
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	710
PspPPI	RGGWCCY	1 cut(s)	710
RsaI	GTAC	2 cut(s)	275, 656
RsaNI	GTAC	2 cut(s)	274, 655
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	244, 484
Sau96I	GGNCC	1 cut(s)	710
ScrFI	CCNGG	3 cut(s)	129, 590, 702
SduI	GDGCHC	2 cut(s)	421, 862
SfaNI	GCATC	2 cut(s)	367, 532
SfcI	CTRYAG	2 cut(s)	219, 384
SfuI	TTCGAA	1 cut(s)	743
SinI	GGWCC	1 cut(s)	710
SphI	GCATGC	1 cut(s)	765
Sse9I	AATT	7 cut(s)	9, 47, 266, 303, 504, 630, 754
SsiI	CCGC	2 cut(s)	144, 875
SspI	AATATT	1 cut(s)	785
SspMI	CTAG	3 cut(s)	615, 672, 737
StyD4I	CCNGG	3 cut(s)	127, 588, 700
StyI	CCWWGG	2 cut(s)	346, 878
TaaI	ACNGT	3 cut(s)	220, 392, 468
TaqI	TCGA	1 cut(s)	743
TasI	AATT	7 cut(s)	9, 47, 266, 303, 504, 630, 754
TatI	WGTACW	1 cut(s)	654
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	352, 441
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TspDTI	ATGAA	2 cut(s)	576, 825
TspGWI	ACGGA	1 cut(s)	215
VneI	GTGCAC	1 cut(s)	858
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	2 cut(s)	9, 266
XceI	RCATGY	1 cut(s)	765
XcmI	CCANNNNNNNNNTGG	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	3 cut(s)	615, 672, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.