Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008365

Physical Location & Seq

Genomic Coordinates Reverse (-)

14405873 .. 14411170

Gene Structure 5298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10690.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTTCCAAATTCGCGCTACAAGTCCCTCCACCTCCGCGCTCGCCTCTCTTACCAGAACGCAGTTGTTCACACGAACAAGAACAACAATGTCCAAAACACCACGATTCTTAAACCCAGGAGTCTCCGACGCCGCTGTTTCAAACGGACGGAGCAAGAGACTGAAAACGACGGAGCAACGACTTGAGATAGTAGCAAAACCCCACCAAATGGATCTCCTACCTGACATTGAAGAATTTGCTTACAGAAATGAGAGCTCATCTTCTTACTCAACTGATATAGGTAAGCCACCTGCTCACTGGGAGAAGGTCCTTGAAGGGATTCGCAAAATGAGGTCGGCTGAAGATGCTCCTGTAGACAGTATGGGTTGTGAGAAAGCCGGAAGTGCTCTCCCTCCTAAGGAGAGAAGATTCGCTGTCTTGGTATCCTCCCTACTGTCAAGCCAAACGAAGGATCAAGTAACACATGGAGCAGTTCAGCGTCTCCTTCAAAATGGTATGCTCTCTGCTGATGCCATTGACAAAGGTGATGAACCAACAATTAAAAGCTTGATTTACCCGGTTGGCTTTTATACAAGAAAGGCTAGCAACTTGAAGAAAATTGCAAACATTTGTCTTGTCAAGTACGATGGAGATATACCTAGCTCATTGGAGGAACTACTCTCACTTCCAGGAATAGGTCCTAAGATGGCCCATTTGGTTATGAATGTCGCTTGGGACAATGTTCAAGGGATTTGTGTAGATACCCATGTGCACCGGATATGCAACCGCCTTGGCTGGGTGCGGGCAGGCAAAAAACAGAAAACATCAAACCCTGAGGAAACGAGAGAGGCATTGCAATTGTGGCTTCCAAAGGACGAATGGGTTCCCATAAACCCTCTTTTGGTAGGATTTGGACAGACAGTTTGCACTCCGCTCAGACCTCGCTGTGGAGTCTGCAGTGTGAGTGAATTCTGCCCATCTGCATACAAAGAGACTTCAAGTCCATTATCCAAGACAAAGAAATCTGGTTCAAGCAAGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0000703 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006289 GO:0006296 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009295 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0016787 GO:0016798 GO:0016799 GO:0018022 GO:0018193 GO:0018205 GO:0019104 GO:0019538 GO:0030054 GO:0032259 GO:0033554 GO:0033683 GO:0034641 GO:0036211 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0090305 GO:0140096 GO:0140097 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

342

Amino Acids

37.6

Weight (kDa)

9.44

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	72 - 212	7.6e-22	HhH-GPD superfamily base excision DNA repair protein
HHH	PF00633	138 - 166	3.6e-09	Helix-hairpin-helix motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05900 AT1G05900 AT2G31450 AT2G31450
fragaria_vesca	FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690
malus_domestica	MD04G1007400.v1.1
prunus_persica	Prupe.1G191600_v2.0.a1 Prupe.1G191600_v2.0.a1
pyrus_communis	pycom04g03440
rosa_chinensis	RchiOBHm_Chr4g0407021
rosa_laevigata	RLG00000008743
rosa_multiflora	Rmu_co8205520.1_g000001
rosa_rugosa	Rorug04G0076900
rosa_samantha	Rh4AG142100 Rh4BG139300 Rh4CG148700 Rh4DG136300
rosa_wichuraiana	Rw4G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	298
Acc36I	ACCTGC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	208
AccBSI	CCGCTC	1 cut(s)	913
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	2 cut(s)	15, 38
AciI	CCGC	5 cut(s)	36, 132, 766, 781, 911
AclWI	GGATC	2 cut(s)	219, 459
AcsI	RAATTY	3 cut(s)	9, 233, 947
AcuI	CTGAAG	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	623
AfiI	CCNNNNNNNGG	7 cut(s)	208, 397, 448, 674, 775, 880, 926
AgsI	TTSAA	8 cut(s)	141, 230, 314, 488, 592, 725, 978, 1011
AhdI	GACNNNNNGTC	1 cut(s)	978
AjnI	CCWGG	2 cut(s)	115, 667
AluBI	AGCT	3 cut(s)	255, 546, 642
AluI	AGCT	3 cut(s)	255, 546, 642
Alw21I	GWGCWC	3 cut(s)	257, 388, 753
Alw26I	GTCTC	4 cut(s)	127, 151, 485, 965
Alw44I	GTGCAC	1 cut(s)	749
AlwI	GGATC	2 cut(s)	219, 459
AoxI	GGCC	1 cut(s)	687
ApaLI	GTGCAC	1 cut(s)	749
ApoI	RAATTY	3 cut(s)	9, 233, 947
ArsI	GACNNNNNNTTYG	2 cut(s)	885, 917
Asp700I	GAANNNNTTC	2 cut(s)	318, 861
AspLEI	GCGC	2 cut(s)	17, 40
AspS9I	GGNCC	3 cut(s)	307, 677, 688
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	536
AsuNHI	GCTAGC	1 cut(s)	581
AvaII	GGWCC	2 cut(s)	307, 677
AxyI	CCTNAGG	2 cut(s)	396, 813
BaeGI	GKGCMC	1 cut(s)	753
BaeI	ACNNNNGTAYC	2 cut(s)	732, 765
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	3 cut(s)	257, 388, 753
BccI	CCATC	3 cut(s)	620, 679, 964
BciT130I	CCWGG	2 cut(s)	117, 669
BciVI	GTATCC	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	557
BcoDI	GTCTC	4 cut(s)	127, 151, 485, 965
BfaI	CTAG	2 cut(s)	582, 639
BfmI	CTRYAG	2 cut(s)	351, 934
BfuAI	ACCTGC	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	433
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	3 cut(s)	117, 557, 669
Bme18I	GGWCC	2 cut(s)	307, 677
BmeRI	GACNNNNNGTC	1 cut(s)	978
BmgT120I	GGNCC	3 cut(s)	307, 677, 688
BmiI	GGNNCC	1 cut(s)	864
BmrFI	CCNGG	3 cut(s)	117, 557, 669
BmrI	ACTGGG	1 cut(s)	307
BmsI	GCATC	2 cut(s)	334, 499
BmtI	GCTAGC	1 cut(s)	585
BmuI	ACTGGG	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	115, 769
BsaWI	WCCGGW	1 cut(s)	753
Bsc4I	CCNNNNNNNGG	7 cut(s)	208, 397, 448, 674, 775, 880, 926
Bse1I	ACTGG	1 cut(s)	302
Bse21I	CCTNAGG	2 cut(s)	396, 813
Bse3DI	GCAATG	1 cut(s)	830
BseBI	CCWGG	2 cut(s)	117, 669
BseDI	CCNNGG	2 cut(s)	115, 769
BseLI	CCNNNNNNNGG	7 cut(s)	208, 397, 448, 674, 775, 880, 926
BseMI	GCAATG	1 cut(s)	830
BseMII	CTCAG	2 cut(s)	804, 928
BseNI	ACTGG	1 cut(s)	302
BseSI	GKGCMC	1 cut(s)	753
BseYI	CCCAGC	1 cut(s)	774
Bsh1236I	CGCG	2 cut(s)	15, 38
BshFI	GGCC	1 cut(s)	689
BsiHKAI	GWGCWC	3 cut(s)	257, 388, 753
BsiSI	CCGG	3 cut(s)	378, 557, 754
BslFI	GGGAC	2 cut(s)	9, 728
BslI	CCNNNNNNNGG	7 cut(s)	208, 397, 448, 674, 775, 880, 926
BsmAI	GTCTC	4 cut(s)	127, 151, 485, 965
BsmBI	CGTCTC	1 cut(s)	485
BsmFI	GGGAC	2 cut(s)	9, 728
BsnI	GGCC	1 cut(s)	689
Bsp1286I	GDGCHC	3 cut(s)	257, 388, 753
Bsp143I	GATC	2 cut(s)	211, 451
BspACI	CCGC	5 cut(s)	36, 132, 766, 781, 911
BspANI	GGCC	1 cut(s)	689
BspCNI	CTCAG	2 cut(s)	805, 927
BspFNI	CGCG	2 cut(s)	15, 38
BspLI	GGNNCC	1 cut(s)	864
BspMAI	CTGCAG	1 cut(s)	938
BspMI	ACCTGC	1 cut(s)	298
BspOI	GCTAGC	1 cut(s)	585
BspPI	GGATC	2 cut(s)	219, 459
BsrBI	CCGCTC	1 cut(s)	913
BsrDI	GCAATG	1 cut(s)	830
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	115, 769
BssMI	GATC	2 cut(s)	211, 451
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	769
Bst2UI	CCWGG	2 cut(s)	117, 669
Bst4CI	ACNGT	3 cut(s)	359, 435, 901
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	4 cut(s)	42, 583, 783, 787
BstDEI	CTNAG	4 cut(s)	396, 681, 813, 914
BstFNI	CGCG	2 cut(s)	15, 38
BstHHI	GCGC	2 cut(s)	17, 40
BstKTI	GATC	2 cut(s)	214, 454
BstMAI	GTCTC	4 cut(s)	127, 151, 485, 965
BstMBI	GATC	2 cut(s)	211, 451
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 383, 841
BstNI	CCWGG	2 cut(s)	117, 669
BstSCI	CCNGG	3 cut(s)	115, 555, 667
BstSFI	CTRYAG	2 cut(s)	351, 934
BstSLI	GKGCMC	1 cut(s)	753
BstUI	CGCG	2 cut(s)	15, 38
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
Bsu36I	CCTNAGG	2 cut(s)	396, 813
BsuI	GTATCC	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	689
BtsI	GCAGTG	1 cut(s)	943
BtsIMutI	CAGTG	2 cut(s)	295, 943
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	4 cut(s)	42, 583, 783, 787
CfoI	GCGC	2 cut(s)	17, 40
Cfr13I	GGNCC	3 cut(s)	307, 677, 688
CseI	GACGC	2 cut(s)	137, 467
Csp6I	GTAC	1 cut(s)	622
CviAII	CATG	2 cut(s)	464, 746
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	4 cut(s)	396, 681, 813, 914
DpnI	GATC	2 cut(s)	213, 453
DpnII	GATC	2 cut(s)	211, 451
DriI	GACNNNNNGTC	1 cut(s)	978
Eam1105I	GACNNNNNGTC	1 cut(s)	978
Ecl136II	GAGCTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	769
Eco24I	GRGCYC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	307, 677
Eco53kI	GAGCTC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	360
Eco81I	CCTNAGG	2 cut(s)	396, 813
EcoICRI	GAGCTC	1 cut(s)	255
EcoO109I	RGGNCCY	2 cut(s)	307, 677
EcoRI	GAATTC	1 cut(s)	947
EcoRII	CCWGG	2 cut(s)	115, 667
EcoT14I	CCWWGG	1 cut(s)	769
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	769
Esp3I	CGTCTC	1 cut(s)	485
FaeI	CATG	2 cut(s)	467, 749
FaqI	GGGAC	2 cut(s)	9, 728
FatI	CATG	2 cut(s)	463, 745
FauI	CCCGC	1 cut(s)	774
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	132
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	2 cut(s)	582, 639
GlaI	GCGC	2 cut(s)	16, 39
GluI	GCNGC	1 cut(s)	132
GsaI	CCCAGC	1 cut(s)	778
HaeIII	GGCC	1 cut(s)	689
HapII	CCGG	3 cut(s)	378, 557, 754
HgaI	GACGC	2 cut(s)	137, 467
HhaI	GCGC	2 cut(s)	17, 40
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	467, 749
Hin6I	GCGC	2 cut(s)	15, 38
HinP1I	GCGC	2 cut(s)	15, 38
HindIII	AAGCTT	1 cut(s)	544
HinfI	GANTC	5 cut(s)	105, 120, 319, 408, 930
HpaII	CCGG	3 cut(s)	378, 557, 754
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	3 cut(s)	69, 355, 751
Hpy188I	TCNGA	2 cut(s)	127, 917
Hpy8I	GTNNAC	3 cut(s)	69, 355, 751
Hpy99I	CGWCG	2 cut(s)	131, 172
HpyAV	CCTTC	4 cut(s)	298, 308, 442, 494
HpyCH4III	ACNGT	3 cut(s)	359, 435, 901
HpyCH4V	TGCA	7 cut(s)	602, 751, 762, 835, 906, 936, 962
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 383, 841
HpyF3I	CTNAG	4 cut(s)	396, 681, 813, 914
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	467, 749
HspAI	GCGC	2 cut(s)	15, 38
Kzo9I	GATC	2 cut(s)	211, 451
LmnI	GCTCC	4 cut(s)	150, 172, 352, 467
LweI	GCATC	2 cut(s)	334, 499
MaeI	CTAG	2 cut(s)	582, 639
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	2 cut(s)	213, 453
MbiI	CCGCTC	1 cut(s)	913
MboI	GATC	2 cut(s)	211, 451
MboII	GAAGA	5 cut(s)	242, 252, 353, 417, 604
MfeI	CAATTG	1 cut(s)	836
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	3 cut(s)	257, 388, 753
MluCI	AATT	6 cut(s)	9, 233, 537, 597, 836, 947
MlyI	GAGTC	2 cut(s)	129, 939
MmeI	TCCRAC	1 cut(s)	150
MroXI	GAANNNNTTC	2 cut(s)	318, 861
MseI	TTAA	2 cut(s)	110, 540
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	3 cut(s)	378, 557, 754
MspR9I	CCNGG	3 cut(s)	117, 557, 669
MunI	CAATTG	1 cut(s)	836
MvaI	CCWGG	2 cut(s)	117, 669
MvnI	CGCG	2 cut(s)	15, 38
MwoI	GCNNNNNNNGC	3 cut(s)	344, 383, 841
NciI	CCSGG	1 cut(s)	557
NdeII	GATC	2 cut(s)	211, 451
NheI	GCTAGC	1 cut(s)	581
NlaIII	CATG	2 cut(s)	467, 749
NlaIV	GGNNCC	1 cut(s)	864
PaqCI	CACCTGC	1 cut(s)	298
PdmI	GAANNNNTTC	2 cut(s)	318, 861
PfeI	GAWTC	3 cut(s)	105, 319, 408
PflMI	CCANNNNNTGG	1 cut(s)	208
PfoI	TCCNGGA	1 cut(s)	667
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	2 cut(s)	128, 938
PpsI	GAGTC	2 cut(s)	128, 938
PpuMI	RGGWCCY	2 cut(s)	307, 677
Psp124BI	GAGCTC	1 cut(s)	257
Psp5II	RGGWCCY	2 cut(s)	307, 677
Psp6I	CCWGG	2 cut(s)	115, 667
PspFI	CCCAGC	1 cut(s)	774
PspGI	CCWGG	2 cut(s)	115, 667
PspN4I	GGNNCC	1 cut(s)	864
PspPI	GGNCC	3 cut(s)	307, 677, 688
PspPPI	RGGWCCY	2 cut(s)	307, 677
PstI	CTGCAG	1 cut(s)	938
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	110, 540
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	211, 451
Sau96I	GGNCC	3 cut(s)	307, 677, 688
SchI	GAGTC	2 cut(s)	129, 939
ScrFI	CCNGG	3 cut(s)	117, 557, 669
SduI	GDGCHC	3 cut(s)	257, 388, 753
SfaNI	GCATC	2 cut(s)	334, 499
SfcI	CTRYAG	2 cut(s)	351, 934
SinI	GGWCC	2 cut(s)	307, 677
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	6 cut(s)	9, 233, 537, 597, 836, 947
SsiI	CCGC	5 cut(s)	36, 132, 766, 781, 911
SspMI	CTAG	2 cut(s)	582, 639
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	3 cut(s)	115, 555, 667
StyI	CCWWGG	1 cut(s)	769
TaaI	ACNGT	3 cut(s)	359, 435, 901
TasI	AATT	6 cut(s)	9, 233, 537, 597, 836, 947
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	3 cut(s)	105, 319, 408
Tru1I	TTAA	2 cut(s)	110, 540
Tru9I	TTAA	2 cut(s)	110, 540
TscAI	CASTG	2 cut(s)	302, 943
TspDTI	ATGAA	2 cut(s)	543, 716
TspGWI	ACGGA	3 cut(s)	159, 163, 185
TspRI	CASTG	2 cut(s)	302, 943
Van91I	CCANNNNNTGG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	307, 677
XapI	RAATTY	3 cut(s)	9, 233, 947
XcmI	CCANNNNNNNNNTGG	2 cut(s)	294, 855
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	2 cut(s)	318, 861
XspI	CTAG	2 cut(s)	582, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.