Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008365

Physical Location & Seq

Genomic Coordinates Forward (+)

24757861 .. 24762751

Gene Structure 4891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG139300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGACATGGTGTGTTGTAAAATTGAAATCCATCCTTTGGTTGAAGTCGAAAATGTTCCAAATTCGCGCGACAAGTGCCTCCTCTCTTACCAAAACACAATTCTTCAACACCTACACAAGAAGAACAAGGATGTCCAAATCACCAACATTCTCTGCCGCCAACTCAGACCCAAACCCAAACCCAGGAGGCTCCGACGCCGCCGTTTCAAAGCCGGAGCTTCGTGTTTTTGCGAGGAGAAAGAGACTGAAAATGACGGAGCAACAGCTTAGTACTGTAGAAGCAAAACCCCACAAACTTGATCTCCTACCTGACATTGAAGAATTTGGGTACAGAAATGAGACTTCATCTTCTTATTCAATTGACATAGGTAAGCCACCTGCTAACTGGGAGAAAGTCCTCCAAGGGATTCGCAAAATGAGGTCTTCTGAAGATGCACCTGTAGACAGTATGGGTTGTGAGAAAGCCGGAAGTGCTCTCCCTCCTAAGGAGAGAAGATTCGCTGTCTTGGTATCCTCCCTACTGTCAAGCCAAACGAAGGATCAAGTTACTCATGGAGCAATTCAGCGTCTCCTTCAAAATGGTTTGCTCTCTGCCGATGCCATTGACAAAGGCGATGAAGCAACCATTAAAAACTTGATTTACCCGGTTGGCTTTTATACAAGAAAGGCTAGTAACTTGAAGAAAATTGCAAAAATTTGTCATGTCAAGTACGATGGAGATATACCTAACTCATTGGAGGAACTCCTCTCACTTCCAGGAATAGGTCCTAAGATGGCTCATTTGGTTATGAATGTCGCTTGGGACAATGTTCAAGGGATTTGTGTAGATACCCATGTGCACCGGATTTGCAACCGCCTTGGCTGGGTGTCAAGGGCAGGCAAAAAACAGAAAACATCAAACCCTGAGGAAACGAGAGAGGCATTGCAATTGTGGCTTCCGAAGGAAGAATGGGTTCCCATAAACCCTCTTTTGGTGGGATTTGGACAGACAGTTTGCACTCCGCTCAGACCTCGCTGTGGAGTCTGCAGTGTGAGTGAATTCTGCCCATCTGCATTCAAAGAGACCTCAAGTCCATTATCCAAGACAAAGAAATCTGGTTCGAGCAAGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0000703 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006289 GO:0006296 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009295 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0016787 GO:0016798 GO:0016799 GO:0018022 GO:0018193 GO:0018205 GO:0019104 GO:0019538 GO:0030054 GO:0032259 GO:0033554 GO:0033683 GO:0034641 GO:0036211 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0090305 GO:0140096 GO:0140097 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

371

Amino Acids

41.19

Weight (kDa)

9.65

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	170 - 308	8.1e-22	HhH-GPD superfamily base excision DNA repair protein
HHH	PF00633	236 - 264	8.4e-10	Helix-hairpin-helix motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05900 AT1G05900 AT2G31450 AT2G31450
fragaria_vesca	FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690
malus_domestica	MD04G1007400.v1.1
prunus_persica	Prupe.1G191600_v2.0.a1 Prupe.1G191600_v2.0.a1
pyrus_communis	pycom04g03440
rosa_chinensis	RchiOBHm_Chr4g0407021
rosa_laevigata	RLG00000008743
rosa_multiflora	Rmu_co8205520.1_g000001
rosa_rugosa	Rorug04G0076900
rosa_samantha	Rh4AG142100 Rh4BG139300 Rh4CG148700 Rh4DG136300
rosa_wichuraiana	Rw4G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	385
Acc36I	ACCTGC	1 cut(s)	385
AccB7I	CCANNNNNTGG	1 cut(s)	36
AccBSI	CCGCTC	1 cut(s)	1003
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	2 cut(s)	66, 68
AciI	CCGC	4 cut(s)	156, 198, 853, 1001
AclWI	GGATC	1 cut(s)	546
AcsI	RAATTY	4 cut(s)	60, 320, 693, 1037
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	3 cut(s)	271, 329, 710
AfiI	CCNNNNNNNGG	8 cut(s)	36, 182, 484, 535, 761, 862, 970, 1016
AhdI	GACNNNNNGTC	1 cut(s)	1068
AjnI	CCWGG	2 cut(s)	181, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	2 cut(s)	217, 265
AluI	AGCT	2 cut(s)	217, 265
Alw21I	GWGCWC	2 cut(s)	475, 840
Alw26I	GTCTC	4 cut(s)	235, 332, 572, 1055
Alw44I	GTGCAC	1 cut(s)	836
AlwI	GGATC	1 cut(s)	546
ApaLI	GTGCAC	1 cut(s)	836
ApoI	RAATTY	4 cut(s)	60, 320, 693, 1037
ArsI	GACNNNNNNTTYG	2 cut(s)	975, 1007
Asp700I	GAANNNNTTC	2 cut(s)	53, 951
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	764
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	764
AxyI	CCTNAGG	2 cut(s)	483, 903
BaeGI	GKGCMC	1 cut(s)	840
BaeI	ACNNNNGTAYC	2 cut(s)	819, 852
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	2 cut(s)	475, 840
BccI	CCATC	4 cut(s)	38, 707, 766, 1054
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	183, 756
BciVI	GTATCC	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	644
BcoDI	GTCTC	4 cut(s)	235, 332, 572, 1055
BfaI	CTAG	1 cut(s)	669
BfmI	CTRYAG	3 cut(s)	273, 438, 1024
BfuAI	ACCTGC	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	2 cut(s)	156, 198
BlsI	GCNGC	2 cut(s)	157, 199
BmcAI	AGTACT	1 cut(s)	271
Bme1390I	CCNGG	3 cut(s)	183, 644, 756
Bme18I	GGWCC	1 cut(s)	764
BmeRI	GACNNNNNGTC	1 cut(s)	1068
BmgT120I	GGNCC	1 cut(s)	764
BmiI	GGNNCC	2 cut(s)	190, 954
BmrFI	CCNGG	3 cut(s)	183, 644, 756
BmrI	ACTGGG	1 cut(s)	394
BmsI	GCATC	2 cut(s)	421, 586
BmuI	ACTGGG	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	1051
BpuMI	CCSGG	1 cut(s)	644
BsaHI	GRCGYC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	1055
BsaJI	CCNNGG	3 cut(s)	181, 400, 856
BsaWI	WCCGGW	1 cut(s)	840
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	8 cut(s)	36, 182, 484, 535, 761, 862, 970, 1016
Bse1I	ACTGG	1 cut(s)	389
Bse21I	CCTNAGG	2 cut(s)	483, 903
Bse3DI	GCAATG	1 cut(s)	920
BseBI	CCWGG	2 cut(s)	183, 756
BseDI	CCNNGG	3 cut(s)	181, 400, 856
BseGI	GGATG	2 cut(s)	30, 135
BseLI	CCNNNNNNNGG	8 cut(s)	36, 182, 484, 535, 761, 862, 970, 1016
BseMI	GCAATG	1 cut(s)	920
BseMII	CTCAG	3 cut(s)	177, 894, 1018
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	3 cut(s)	70, 247, 734
BseSI	GKGCMC	1 cut(s)	840
BseYI	CCCAGC	1 cut(s)	861
Bsh1236I	CGCG	2 cut(s)	66, 68
BsiHKAI	GWGCWC	2 cut(s)	475, 840
BsiSI	CCGG	4 cut(s)	212, 465, 644, 841
BslFI	GGGAC	1 cut(s)	815
BslI	CCNNNNNNNGG	8 cut(s)	36, 182, 484, 535, 761, 862, 970, 1016
BsmAI	GTCTC	4 cut(s)	235, 332, 572, 1055
BsmBI	CGTCTC	1 cut(s)	572
BsmFI	GGGAC	1 cut(s)	815
BsmI	GAATGC	1 cut(s)	1052
Bso31I	GGTCTC	1 cut(s)	1055
Bsp1286I	GDGCHC	2 cut(s)	475, 840
Bsp143I	GATC	2 cut(s)	298, 538
BspACI	CCGC	4 cut(s)	156, 198, 853, 1001
BspCNI	CTCAG	3 cut(s)	176, 895, 1017
BspFNI	CGCG	2 cut(s)	66, 68
BspLI	GGNNCC	2 cut(s)	190, 954
BspMAI	CTGCAG	1 cut(s)	1028
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	1 cut(s)	546
BspTNI	GGTCTC	1 cut(s)	1055
BsrBI	CCGCTC	1 cut(s)	1003
BsrDI	GCAATG	1 cut(s)	920
BsrI	ACTGG	1 cut(s)	389
BssECI	CCNNGG	3 cut(s)	181, 400, 856
BssMI	GATC	2 cut(s)	298, 538
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	400, 856
Bst2UI	CCWGG	2 cut(s)	183, 756
Bst4CI	ACNGT	4 cut(s)	274, 446, 522, 991
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	877
BstDEI	CTNAG	6 cut(s)	163, 266, 483, 768, 903, 1004
BstF5I	GGATG	2 cut(s)	30, 135
BstFNI	CGCG	2 cut(s)	66, 68
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	301, 541
BstMAI	GTCTC	4 cut(s)	235, 332, 572, 1055
BstMBI	GATC	2 cut(s)	298, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 470, 931
BstNI	CCWGG	2 cut(s)	183, 756
BstSCI	CCNGG	3 cut(s)	181, 642, 754
BstSFI	CTRYAG	3 cut(s)	273, 438, 1024
BstSLI	GKGCMC	1 cut(s)	840
BstUI	CGCG	2 cut(s)	66, 68
BstV2I	GAAGAC	1 cut(s)	414
Bsu36I	CCTNAGG	2 cut(s)	483, 903
BsuI	GTATCC	1 cut(s)	520
BtgZI	GCGATG	1 cut(s)	627
BtsCI	GGATG	2 cut(s)	30, 135
BtsI	GCAGTG	1 cut(s)	1033
BtsIMutI	CAGTG	1 cut(s)	1033
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	877
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	764
CseI	GACGC	2 cut(s)	203, 554
Csp6I	GTAC	3 cut(s)	270, 328, 709
CviAII	CATG	4 cut(s)	6, 551, 701, 833
CviQI	GTAC	3 cut(s)	270, 328, 709
DdeI	CTNAG	6 cut(s)	163, 266, 483, 768, 903, 1004
DpnI	GATC	2 cut(s)	300, 540
DpnII	GATC	2 cut(s)	298, 538
DriI	GACNNNNNGTC	1 cut(s)	1068
Eam1105I	GACNNNNNGTC	1 cut(s)	1068
Eco130I	CCWWGG	2 cut(s)	400, 856
Eco31I	GGTCTC	1 cut(s)	1055
Eco47I	GGWCC	1 cut(s)	764
Eco57I	CTGAAG	1 cut(s)	447
Eco81I	CCTNAGG	2 cut(s)	483, 903
EcoO109I	RGGNCCY	1 cut(s)	764
EcoRI	GAATTC	1 cut(s)	1037
EcoRII	CCWGG	2 cut(s)	181, 754
EcoT14I	CCWWGG	2 cut(s)	400, 856
ErhI	CCWWGG	2 cut(s)	400, 856
Esp3I	CGTCTC	1 cut(s)	572
FaeI	CATG	4 cut(s)	9, 554, 704, 836
FaqI	GGGAC	1 cut(s)	815
FatI	CATG	4 cut(s)	5, 550, 700, 832
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	156, 198
FokI	GGATG	2 cut(s)	17, 142
Fsp4HI	GCNGC	2 cut(s)	156, 198
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	2 cut(s)	156, 198
GsaI	CCCAGC	1 cut(s)	865
HapII	CCGG	4 cut(s)	212, 465, 644, 841
HgaI	GACGC	2 cut(s)	203, 554
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	4 cut(s)	9, 554, 704, 836
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	3 cut(s)	406, 495, 1020
HpaII	CCGG	4 cut(s)	212, 465, 644, 841
HphI	GGTGA	1 cut(s)	132
Hpy166II	GTNNAC	2 cut(s)	442, 838
Hpy188I	TCNGA	5 cut(s)	166, 193, 427, 939, 1007
Hpy8I	GTNNAC	2 cut(s)	442, 838
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	3 cut(s)	529, 581, 934
HpyCH4III	ACNGT	4 cut(s)	274, 446, 522, 991
HpyCH4V	TGCA	8 cut(s)	434, 689, 838, 849, 925, 996, 1026, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 470, 931
HpyF3I	CTNAG	6 cut(s)	163, 266, 483, 768, 903, 1004
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	4 cut(s)	9, 554, 704, 836
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	298, 538
LmnI	GCTCC	4 cut(s)	194, 214, 256, 554
LweI	GCATC	2 cut(s)	421, 586
MaeI	CTAG	1 cut(s)	669
MaeIII	GTNAC	2 cut(s)	544, 671
MalI	GATC	2 cut(s)	300, 540
MbiI	CCGCTC	1 cut(s)	1003
MboI	GATC	2 cut(s)	298, 538
MboII	GAAGA	9 cut(s)	94, 132, 329, 339, 414, 440, 504, 691, 956
MfeI	CAATTG	2 cut(s)	357, 926
MhlI	GDGCHC	2 cut(s)	475, 840
MlyI	GAGTC	1 cut(s)	1029
MmeI	TCCRAC	1 cut(s)	216
MroXI	GAANNNNTTC	2 cut(s)	53, 951
MseI	TTAA	1 cut(s)	627
MspI	CCGG	4 cut(s)	212, 465, 644, 841
MspR9I	CCNGG	3 cut(s)	183, 644, 756
MunI	CAATTG	2 cut(s)	357, 926
Mva1269I	GAATGC	1 cut(s)	1052
MvaI	CCWGG	2 cut(s)	183, 756
MvnI	CGCG	2 cut(s)	66, 68
MwoI	GCNNNNNNNGC	3 cut(s)	74, 470, 931
NciI	CCSGG	1 cut(s)	644
NdeII	GATC	2 cut(s)	298, 538
NlaIII	CATG	4 cut(s)	9, 554, 704, 836
NlaIV	GGNNCC	2 cut(s)	190, 954
PaqCI	CACCTGC	1 cut(s)	385
PctI	GAATGC	1 cut(s)	1052
PdmI	GAANNNNTTC	2 cut(s)	53, 951
PfeI	GAWTC	2 cut(s)	406, 495
PflMI	CCANNNNNTGG	1 cut(s)	36
PfoI	TCCNGGA	1 cut(s)	754
PkrI	GCNGC	2 cut(s)	157, 199
PleI	GAGTC	1 cut(s)	1028
PpsI	GAGTC	1 cut(s)	1028
PpuMI	RGGWCCY	1 cut(s)	764
Psp5II	RGGWCCY	1 cut(s)	764
Psp6I	CCWGG	2 cut(s)	181, 754
PspFI	CCCAGC	1 cut(s)	861
PspGI	CCWGG	2 cut(s)	181, 754
PspN4I	GGNNCC	2 cut(s)	190, 954
PspPI	GGNCC	1 cut(s)	764
PspPPI	RGGWCCY	1 cut(s)	764
PstI	CTGCAG	1 cut(s)	1028
RsaI	GTAC	3 cut(s)	271, 329, 710
RsaNI	GTAC	3 cut(s)	270, 328, 709
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	2 cut(s)	156, 198
Sau3AI	GATC	2 cut(s)	298, 538
Sau96I	GGNCC	1 cut(s)	764
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	1 cut(s)	1029
ScrFI	CCNGG	3 cut(s)	183, 644, 756
SduI	GDGCHC	2 cut(s)	475, 840
SfaNI	GCATC	2 cut(s)	421, 586
SfcI	CTRYAG	3 cut(s)	273, 438, 1024
SinI	GGWCC	1 cut(s)	764
SmlI	CTYRAG	1 cut(s)	1066
SmoI	CTYRAG	1 cut(s)	1066
SsiI	CCGC	4 cut(s)	156, 198, 853, 1001
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	3 cut(s)	181, 642, 754
StyI	CCWWGG	2 cut(s)	400, 856
TaaI	ACNGT	4 cut(s)	274, 446, 522, 991
TaqI	TCGA	2 cut(s)	47, 1100
TatI	WGTACW	1 cut(s)	269
TauI	GCSGC	2 cut(s)	158, 200
TfiI	GAWTC	2 cut(s)	406, 495
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	1 cut(s)	1033
TspDTI	ATGAA	3 cut(s)	333, 630, 803
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	1033
Van91I	CCANNNNNTGG	1 cut(s)	36
VneI	GTGCAC	1 cut(s)	836
VpaK11BI	GGWCC	1 cut(s)	764
XapI	RAATTY	4 cut(s)	60, 320, 693, 1037
XcmI	CCANNNNNNNNNTGG	1 cut(s)	381
XmiI	GTMKAC	1 cut(s)	441
XmnI	GAANNNNTTC	2 cut(s)	53, 951
XspI	CTAG	1 cut(s)	669
ZrmI	AGTACT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.