Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0008365

Physical Location & Seq

Genomic Coordinates Reverse (-)

853887 .. 859208

Gene Structure 5322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1007400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCTACATGTCCGTGTGAGAAGCCCCTCCACCCTCGGCTTTGCAACCGCTCGAATCCAATTCAACAGAATGTCCAAAACGAGATTCTCTGTCAAACCCATTCAATCCAAAACAGAGATACCCACTTCCGACCCAGACCCAAACCCAGGCTCTGAAAACGGTTCAGCAGCAGAGCTTCGTGTTTTTTCGAGGAGAAAGAGAGTGAAAAGGACAGAAGAAGTTCAAAAATTACAGCTTGAAGCAAAACCCATTGCCCAGAAACTGGCTGTACTACCTGATATTGAAGAATTCGCATACAAAAAAGTGAATACATCTACCAATTCAATTGACACAGGTAAACCACCTGCTAACTGGGAGAAAGTCCTTGATGGGATTCGCAAAATGAGGTCTTCTGAAGATGCACCAGTAGACAGTATGGGTTGCGAGAAAGCTGGAAGCTCTCTTCCTCCTAAGGAACGAAGATTTGCTGTCTTGGTGTCTTCTCTCTTGTCAAGCCAAACGAAGGATCATGTTAACCATGGAGCAATTCAGCGTTTACTTCAAAATGGTCTGCTCTCTGCTGATTCCATTGATAAAGCTGATGAAGCAACCATTAAAAGCTTGATTTACCCGGTTGGATTTTATACAAGAAAGGCTGGTAACTTAAAGAAAGTTGCAAACATTTGTCTCACGAAGTATGATGGAGATATACCTAGCTCGTTGGAGGAACTACTCTCACTTCCAGGAATAGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGGTTGGAACGATGTTCAAGGTATTTGTGTAGATACTCATGTGCACCGCATTTGCAATAGGCTTGGGTGGGTGTCACGGCCAGGAAAAAAACAGAAAACTTCAACTCCTGAGCAAACGAGAGAGGCATTGCAATTGTGGCTTCCGAAGGAAGAATGGGACCCCATAAACCCTCTTTTGGTAGGATTTGGACAGACAATTTGCACTCCCCTCAGACCTCGTTGTGGATTGTGCAGTGTGAGCGAGTTTTGCCCATCTGCATTCAAAGAGGCTTCAAGTCCGTCATCCAAGTCAAAGAAGTCTGGTTTAAACAAGAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0000703 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006289 GO:0006296 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009295 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0016787 GO:0016798 GO:0016799 GO:0018022 GO:0018193 GO:0018205 GO:0019104 GO:0019538 GO:0030054 GO:0032259 GO:0033554 GO:0033683 GO:0034641 GO:0036211 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0090305 GO:0140096 GO:0140097 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

361

Amino Acids

39.76

Weight (kDa)

9.6

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	159 - 300	3e-21	HhH-GPD superfamily base excision DNA repair protein
HHH	PF00633	225 - 253	5.2e-09	Helix-hairpin-helix motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05900 AT1G05900 AT2G31450 AT2G31450
fragaria_vesca	FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690 FvH4_4g10690
malus_domestica	MD04G1007400.v1.1
prunus_persica	Prupe.1G191600_v2.0.a1 Prupe.1G191600_v2.0.a1
pyrus_communis	pycom04g03440
rosa_chinensis	RchiOBHm_Chr4g0407021
rosa_laevigata	RLG00000008743
rosa_multiflora	Rmu_co8205520.1_g000001
rosa_rugosa	Rorug04G0076900
rosa_samantha	Rh4AG142100 Rh4BG139300 Rh4CG148700 Rh4DG136300
rosa_wichuraiana	Rw4G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	352
Acc36I	ACCTGC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccBSI	CCGCTC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	408
AciI	CCGC	2 cut(s)	48, 808
AclWI	GGATC	1 cut(s)	513
AcoI	YGGCCR	1 cut(s)	839
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	6 cut(s)	146, 262, 502, 728, 937, 983
AflIII	ACRYGT	1 cut(s)	7
AjnI	CCWGG	3 cut(s)	145, 721, 841
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	8 cut(s)	175, 235, 431, 438, 578, 600, 696, 1078
AluI	AGCT	8 cut(s)	175, 235, 431, 438, 578, 600, 696, 1078
Alw21I	GWGCWC	1 cut(s)	807
Alw26I	GTCTC	1 cut(s)	671
Alw44I	GTGCAC	1 cut(s)	803
AlwI	GGATC	1 cut(s)	513
AlwNI	CAGNNNCTG	2 cut(s)	152, 262
AoxI	GGCC	1 cut(s)	839
ApaLI	GTGCAC	1 cut(s)	803
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	2 cut(s)	942, 974
Asp700I	GAANNNNTTC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	731, 919
AsuC2I	CCSGG	1 cut(s)	611
AvaII	GGWCC	2 cut(s)	731, 919
AxyI	CCTNAGG	1 cut(s)	450
BaeGI	GKGCMC	1 cut(s)	807
BaeI	ACNNNNGTAYC	2 cut(s)	786, 819
BbsI	GAAGAC	2 cut(s)	381, 471
Bbv12I	GWGCWC	1 cut(s)	807
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	4 cut(s)	362, 674, 733, 1021
BceAI	ACGGC	1 cut(s)	854
BciT130I	CCWGG	3 cut(s)	147, 723, 843
BcnI	CCSGG	1 cut(s)	611
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	1 cut(s)	693
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	4 cut(s)	147, 611, 723, 843
Bme18I	GGWCC	2 cut(s)	731, 919
BmgT120I	GGNCC	2 cut(s)	731, 919
BmiI	GGNNCC	2 cut(s)	920, 921
BmrFI	CCNGG	4 cut(s)	147, 611, 723, 843
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	361
BpiI	GAAGAC	2 cut(s)	381, 471
Bpu10I	CCTNAGC	1 cut(s)	870
BpuMI	CCSGG	1 cut(s)	611
BsaJI	CCNNGG	3 cut(s)	34, 145, 517
BsaXI	ACNNNNNCTCC	2 cut(s)	850, 880
Bsc4I	CCNNNNNNNGG	6 cut(s)	146, 262, 502, 728, 937, 983
Bse1I	ACTGG	3 cut(s)	267, 356, 404
Bse21I	CCTNAGG	1 cut(s)	450
Bse3DI	GCAATG	2 cut(s)	249, 887
BseBI	CCWGG	3 cut(s)	147, 723, 843
BseDI	CCNNGG	3 cut(s)	34, 145, 517
BseGI	GGATG	1 cut(s)	1043
BseLI	CCNNNNNNNGG	6 cut(s)	146, 262, 502, 728, 937, 983
BseMI	GCAATG	2 cut(s)	249, 887
BseMII	CTCAG	2 cut(s)	861, 985
BseNI	ACTGG	3 cut(s)	267, 356, 404
BseRI	GAGGAG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	807
BseXI	GCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	1012
BshFI	GGCC	1 cut(s)	841
BsiHKAI	GWGCWC	1 cut(s)	807
BsiSI	CCGG	1 cut(s)	611
BslFI	GGGAC	1 cut(s)	932
BslI	CCNNNNNNNGG	6 cut(s)	146, 262, 502, 728, 937, 983
BsmAI	GTCTC	1 cut(s)	671
BsmFI	GGGAC	1 cut(s)	932
BsmI	GAATGC	1 cut(s)	1019
BsnI	GGCC	1 cut(s)	841
Bsp1286I	GDGCHC	1 cut(s)	807
Bsp143I	GATC	1 cut(s)	505
Bsp19I	CCATGG	1 cut(s)	517
BspACI	CCGC	2 cut(s)	48, 808
BspANI	GGCC	1 cut(s)	841
BspCNI	CTCAG	2 cut(s)	862, 984
BspLI	GGNNCC	2 cut(s)	920, 921
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	513
BsrBI	CCGCTC	1 cut(s)	50
BsrDI	GCAATG	2 cut(s)	249, 887
BsrI	ACTGG	3 cut(s)	267, 356, 404
BssECI	CCNNGG	3 cut(s)	34, 145, 517
BssMI	GATC	1 cut(s)	505
BssT1I	CCWWGG	1 cut(s)	517
Bst2UI	CCWGG	3 cut(s)	147, 723, 843
Bst4CI	ACNGT	2 cut(s)	161, 413
Bst6I	CTCTTC	1 cut(s)	447
BstDEI	CTNAG	4 cut(s)	450, 735, 870, 971
BstDSI	CCRYGG	1 cut(s)	517
BstF5I	GGATG	1 cut(s)	1043
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	4 cut(s)	584, 898, 999, 1008
BstNI	CCWGG	3 cut(s)	147, 723, 843
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	4 cut(s)	145, 609, 721, 841
BstSLI	GKGCMC	1 cut(s)	807
BstV1I	GCAGC	1 cut(s)	179
BstV2I	GAAGAC	2 cut(s)	381, 471
Bsu36I	CCTNAGG	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	841
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	1043
BtsI	GCAGTG	1 cut(s)	1000
BtsIMutI	CAGTG	1 cut(s)	1000
BveI	ACCTGC	1 cut(s)	352
CaiI	CAGNNNCTG	2 cut(s)	152, 262
Cfr13I	GGNCC	2 cut(s)	731, 919
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	4 cut(s)	8, 509, 518, 800
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	4 cut(s)	450, 735, 870, 971
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
DraI	TTTAAA	1 cut(s)	1068
EaeI	YGGCCR	1 cut(s)	839
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco130I	CCWWGG	1 cut(s)	517
Eco47I	GGWCC	2 cut(s)	731, 919
Eco57I	CTGAAG	1 cut(s)	414
Eco81I	CCTNAGG	1 cut(s)	450
EcoO109I	RGGNCCY	2 cut(s)	731, 919
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	3 cut(s)	145, 721, 841
EcoT14I	CCWWGG	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	4 cut(s)	11, 512, 521, 803
FaqI	GGGAC	1 cut(s)	932
FatI	CATG	4 cut(s)	7, 508, 517, 799
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	1030
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	693
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	841
HapII	CCGG	1 cut(s)	611
Hin1II	CATG	4 cut(s)	11, 512, 521, 803
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	2 cut(s)	598, 1076
HinfI	GANTC	4 cut(s)	54, 84, 373, 563
HpaI	GTTAAC	1 cut(s)	514
HpaII	CCGG	1 cut(s)	611
Hpy166II	GTNNAC	5 cut(s)	338, 409, 514, 536, 805
Hpy188I	TCNGA	5 cut(s)	130, 154, 394, 906, 974
Hpy188III	TCNNGA	2 cut(s)	670, 869
Hpy8I	GTNNAC	5 cut(s)	338, 409, 514, 536, 805
HpyAV	CCTTC	2 cut(s)	496, 901
HpyCH4III	ACNGT	2 cut(s)	161, 413
HpyCH4V	TGCA	9 cut(s)	44, 401, 656, 805, 816, 892, 963, 993, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	584, 898, 999, 1008
HpyF3I	CTNAG	4 cut(s)	450, 735, 870, 971
Hsp92II	CATG	4 cut(s)	11, 512, 521, 803
KflI	GGGWCCC	1 cut(s)	919
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	1 cut(s)	505
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	1 cut(s)	693
MaeIII	GTNAC	2 cut(s)	638, 834
MalI	GATC	1 cut(s)	507
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	1 cut(s)	505
MboII	GAAGA	8 cut(s)	227, 296, 381, 407, 434, 471, 471, 923
MfeI	CAATTG	2 cut(s)	324, 893
MhlI	GDGCHC	1 cut(s)	807
MluCI	AATT	8 cut(s)	59, 227, 287, 319, 324, 525, 893, 957
MmeI	TCCRAC	4 cut(s)	153, 595, 681, 746
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	4 cut(s)	513, 594, 644, 1067
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	4 cut(s)	147, 611, 723, 843
MssI	GTTTAAAC	1 cut(s)	1068
MunI	CAATTG	2 cut(s)	324, 893
Mva1269I	GAATGC	1 cut(s)	1019
MvaI	CCWGG	3 cut(s)	147, 723, 843
MwoI	GCNNNNNNNGC	4 cut(s)	584, 898, 999, 1008
NciI	CCSGG	1 cut(s)	611
NcoI	CCATGG	1 cut(s)	517
NdeII	GATC	1 cut(s)	505
NlaIII	CATG	4 cut(s)	11, 512, 521, 803
NlaIV	GGNNCC	2 cut(s)	920, 921
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	834
NspI	RCATGY	1 cut(s)	11
PaqCI	CACCTGC	1 cut(s)	352
PciI	ACATGT	1 cut(s)	7
PctI	GAATGC	1 cut(s)	1019
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	4 cut(s)	54, 84, 373, 563
PflMI	CCANNNNNTGG	1 cut(s)	262
PfoI	TCCNGGA	1 cut(s)	721
PkrI	GCNGC	1 cut(s)	169
PmeI	GTTTAAAC	1 cut(s)	1068
PpuMI	RGGWCCY	2 cut(s)	731, 919
PscI	ACATGT	1 cut(s)	7
Psp5II	RGGWCCY	2 cut(s)	731, 919
Psp6I	CCWGG	3 cut(s)	145, 721, 841
PspGI	CCWGG	3 cut(s)	145, 721, 841
PspN4I	GGNNCC	2 cut(s)	920, 921
PspPI	GGNCC	2 cut(s)	731, 919
PspPPI	RGGWCCY	2 cut(s)	731, 919
PstNI	CAGNNNCTG	2 cut(s)	152, 262
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	513, 594, 644, 1067
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	505
Sau96I	GGNCC	2 cut(s)	731, 919
ScrFI	CCNGG	4 cut(s)	147, 611, 723, 843
SduI	GDGCHC	1 cut(s)	807
SfaNI	GCATC	1 cut(s)	388
SinI	GGWCC	2 cut(s)	731, 919
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	8 cut(s)	59, 227, 287, 319, 324, 525, 893, 957
SsiI	CCGC	2 cut(s)	48, 808
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	4 cut(s)	145, 609, 721, 841
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	2 cut(s)	161, 413
TaqI	TCGA	2 cut(s)	52, 188
TasI	AATT	8 cut(s)	59, 227, 287, 319, 324, 525, 893, 957
TatI	WGTACW	1 cut(s)	268
TfiI	GAWTC	4 cut(s)	54, 84, 373, 563
Tru1I	TTAA	4 cut(s)	513, 594, 644, 1067
Tru9I	TTAA	4 cut(s)	513, 594, 644, 1067
TscAI	CASTG	1 cut(s)	1000
TseFI	GTSAC	1 cut(s)	834
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	834
TspDTI	ATGAA	2 cut(s)	597, 770
TspGWI	ACGGA	1 cut(s)	1029
TspRI	CASTG	1 cut(s)	1000
Van91I	CCANNNNNTGG	1 cut(s)	262
VneI	GTGCAC	1 cut(s)	803
VpaK11BI	GGWCC	2 cut(s)	731, 919
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	408
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.