Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008010

Physical Location & Seq

Genomic Coordinates Reverse (-)

1894289 .. 1897027

Gene Structure 2739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCTTCCATCACGAATTATGTCCGATACATGGCTCACAAGCTCGAGTACTCTCTCACTCTCAGCCTTAAGAAACATACTAGAGAGAAGCTCAGTGACCGGGAACTCTTTGGTGTAGTCATGAAGAATCTATTCTATGGAAGAATAAGCTACTTACACTCGGACAAAGGAAAAGAGATGGCCCCAACCATGGGAACAAATGAAAGCACGCTACTTGTCCGTAAGCTACCAGTTGTTGATACAAGGTACATTTTCGTAGGGGATGCTGTTGTCTTGAAGGACCCGAATGAAACAAATAAGTATATAGTCAGAAGACTAGCAGCTTTAGAGGGATCTGAAATGGTATCAAGTGATGAGAAAGATGAGCCTTTTGTTCTCGAAAAGGATCAGTGCTGGGTCGTTGCTGAGAATCAAGAGATGAAATCTAAAGAAGCATATGATAGTCGAACATTTGGTCCAATTTCAATGGCGGACATAGTGGGAAGAGCTATATATTGTCTGAGGACAGCAGTGGATCATGGTCCAGTAAGCAACAGTGAATTTGCCATGGACGAGGATTCCCCAATCCTGGCGGTAGAACTTGACGTGGATGAATTGGCTAAAGGCCACAAGGCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

206

Amino Acids

23.25

Weight (kDa)

5.46

Isoelectric Point (pI)

28.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06200 AT1G06200 AT2G31140
fragaria_vesca	FvH4_2g21360 FvH4_2g21360 FvH4_2g21360
malus_domestica	MD05G1196300.v1.1 MD10G1183600.v1.1
prunus_persica	Prupe.8G222700_v2.0.a1 Prupe.8G222700_v2.0.a1
pyrus_communis	pycom05g18330 pycom10g15860
rosa_chinensis	RchiOBHm_Chr6g0287951
rosa_laevigata	RLG00000012453
rosa_multiflora	Rmu_sc0000042.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180640 Rroxscaffold_7G00180900
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302900 Rh6BG309100 Rh6CG300600 Rh6CG316800 Rh6DG301600
rosa_wichuraiana	Rw6G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	470, 572
AclWI	GGATC	3 cut(s)	340, 393, 522
AcsI	RAATTY	1 cut(s)	539
AcyI	GRCGYC	1 cut(s)	614
AfaI	GTAC	2 cut(s)	50, 248
AfiI	CCNNNNNNNGG	4 cut(s)	31, 190, 191, 568
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	277, 465
AjiI	CACGTC	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	567
AloI	GAACNNNNNNTCC	2 cut(s)	439, 471
AluBI	AGCT	6 cut(s)	43, 91, 150, 226, 323, 488
AluI	AGCT	6 cut(s)	43, 91, 150, 226, 323, 488
AlwI	GGATC	3 cut(s)	340, 393, 522
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	2 cut(s)	180, 604
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	539
ArsI	GACNNNNNNTTYG	2 cut(s)	439, 471
Asp700I	GAANNNNTTC	1 cut(s)	131
AspS9I	GGNCC	4 cut(s)	181, 280, 455, 521
AsuC2I	CCSGG	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	3 cut(s)	280, 455, 521
BbsI	GAAGAC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	2 cut(s)	17, 172
BciT130I	CCWGG	1 cut(s)	569
BcnI	CCSGG	1 cut(s)	101
BfaI	CTAG	2 cut(s)	81, 317
BfrI	CTTAAG	1 cut(s)	68
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	101, 569
Bme18I	GGWCC	3 cut(s)	280, 455, 521
BmeT110I	CYCGRG	1 cut(s)	44
BmgBI	CACGTC	1 cut(s)	586
BmgT120I	GGNCC	4 cut(s)	181, 280, 455, 521
BmiI	GGNNCC	2 cut(s)	183, 282
BmrFI	CCNGG	2 cut(s)	101, 569
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BpuMI	CCSGG	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	614
BsaJI	CCNNGG	2 cut(s)	189, 546
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 190, 191, 568
Bse1I	ACTGG	2 cut(s)	230, 524
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	2 cut(s)	189, 546
BseGI	GGATG	2 cut(s)	268, 595
BseLI	CCNNNNNNNGG	4 cut(s)	31, 190, 191, 568
BseMII	CTCAG	4 cut(s)	76, 106, 396, 491
BseNI	ACTGG	2 cut(s)	230, 524
BseXI	GCAGC	1 cut(s)	332
BseYI	CCCAGC	1 cut(s)	393
BshFI	GGCC	2 cut(s)	182, 606
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	100
BslI	CCNNNNNNNGG	4 cut(s)	31, 190, 191, 568
BsnI	GGCC	2 cut(s)	182, 606
BsoBI	CYCGRG	1 cut(s)	44
Bsp143I	GATC	3 cut(s)	332, 385, 514
Bsp19I	CCATGG	2 cut(s)	189, 546
BspACI	CCGC	2 cut(s)	470, 572
BspANI	GGCC	2 cut(s)	182, 606
BspCNI	CTCAG	4 cut(s)	75, 105, 397, 492
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	183, 282
BspPI	GGATC	3 cut(s)	340, 393, 522
BspQI	GCTCTTC	1 cut(s)	478
BspTI	CTTAAG	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	230, 524
BssECI	CCNNGG	2 cut(s)	189, 546
BssMI	GATC	3 cut(s)	332, 385, 514
BssNI	GRCGYC	1 cut(s)	614
BssT1I	CCWWGG	2 cut(s)	189, 546
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	1 cut(s)	536
Bst6I	CTCTTC	1 cut(s)	478
BstACI	GRCGYC	1 cut(s)	614
BstAFI	CTTAAG	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	4 cut(s)	62, 92, 405, 500
BstDSI	CCRYGG	2 cut(s)	189, 546
BstF5I	GGATG	2 cut(s)	268, 595
BstKTI	GATC	3 cut(s)	335, 388, 517
BstMBI	GATC	3 cut(s)	332, 385, 514
BstNI	CCWGG	1 cut(s)	569
BstSCI	CCNGG	2 cut(s)	99, 567
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	182, 606
BtgI	CCRYGG	2 cut(s)	189, 546
BtrI	CACGTC	1 cut(s)	586
BtsCI	GGATG	2 cut(s)	268, 595
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	4 cut(s)	100, 395, 516, 541
Cac8I	GCNNGC	1 cut(s)	209
CciI	TCATGA	1 cut(s)	120
Cfr13I	GGNCC	4 cut(s)	181, 280, 455, 521
CseI	GACGC	1 cut(s)	603
Csp6I	GTAC	2 cut(s)	49, 247
CviAII	CATG	5 cut(s)	31, 121, 190, 518, 547
CviQI	GTAC	2 cut(s)	49, 247
DdeI	CTNAG	4 cut(s)	62, 92, 405, 500
DpnI	GATC	3 cut(s)	334, 387, 516
DpnII	GATC	3 cut(s)	332, 385, 514
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
EciI	GGCGGA	1 cut(s)	485
Eco130I	CCWWGG	2 cut(s)	189, 546
Eco47I	GGWCC	3 cut(s)	280, 455, 521
Eco88I	CYCGRG	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	567
EcoT14I	CCWWGG	2 cut(s)	189, 546
ErhI	CCWWGG	2 cut(s)	189, 546
FaeI	CATG	5 cut(s)	34, 124, 193, 521, 550
FatI	CATG	5 cut(s)	30, 120, 189, 517, 546
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	2 cut(s)	275, 602
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	2 cut(s)	81, 317
GluI	GCNGC	1 cut(s)	321
GsaI	CCCAGC	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	182, 606
HapII	CCGG	1 cut(s)	100
HgaI	GACGC	1 cut(s)	603
Hin1I	GRCGYC	1 cut(s)	614
Hin1II	CATG	5 cut(s)	34, 124, 193, 521, 550
HinfI	GANTC	3 cut(s)	127, 409, 557
HpaII	CCGG	1 cut(s)	100
Hpy188I	TCNGA	5 cut(s)	26, 163, 311, 337, 501
Hpy188III	TCNNGA	5 cut(s)	13, 121, 274, 377, 413
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4IV	ACGT	1 cut(s)	585
HpyF3I	CTNAG	4 cut(s)	62, 92, 405, 500
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	1 cut(s)	614
Hsp92II	CATG	5 cut(s)	34, 124, 193, 521, 550
Kzo9I	GATC	3 cut(s)	332, 385, 514
LguI	GCTCTTC	1 cut(s)	478
LpnPI	CCDG	6 cut(s)	113, 243, 379, 537, 554, 581
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	81, 317
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	3 cut(s)	334, 387, 516
MboI	GATC	3 cut(s)	332, 385, 514
MboII	GAAGA	4 cut(s)	136, 153, 324, 495
MflI	RGATCY	1 cut(s)	332
MluCI	AATT	4 cut(s)	16, 459, 539, 593
MnlI	CCTC	3 cut(s)	322, 495, 547
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	1 cut(s)	69
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	2 cut(s)	101, 569
MvaI	CCWGG	1 cut(s)	569
NciI	CCSGG	1 cut(s)	101
NcoI	CCATGG	2 cut(s)	189, 546
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	3 cut(s)	332, 385, 514
NlaIII	CATG	5 cut(s)	34, 124, 193, 521, 550
NlaIV	GGNNCC	2 cut(s)	183, 282
NmuCI	GTSAC	1 cut(s)	95
PaeR7I	CTCGAG	1 cut(s)	44
PagI	TCATGA	1 cut(s)	120
PciSI	GCTCTTC	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	3 cut(s)	127, 409, 557
PkrI	GCNGC	1 cut(s)	322
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	567
PspFI	CCCAGC	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	2 cut(s)	183, 282
PspPI	GGNCC	4 cut(s)	181, 280, 455, 521
PspPPI	RGGWCCY	1 cut(s)	280
PspXI	VCTCGAGB	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	2 cut(s)	50, 248
RsaNI	GTAC	2 cut(s)	49, 247
SapI	GCTCTTC	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	3 cut(s)	332, 385, 514
Sau96I	GGNCC	4 cut(s)	181, 280, 455, 521
ScaI	AGTACT	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	101, 569
SetI	ASST	8 cut(s)	45, 93, 152, 228, 248, 325, 490, 588
SfaNI	GCATC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	3 cut(s)	280, 455, 521
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	44, 68
SmoI	CTYRAG	2 cut(s)	44, 68
Sse9I	AATT	4 cut(s)	16, 459, 539, 593
SsiI	CCGC	2 cut(s)	470, 572
SspMI	CTAG	2 cut(s)	81, 317
StyD4I	CCNGG	2 cut(s)	99, 567
StyI	CCWWGG	2 cut(s)	189, 546
TaaI	ACNGT	1 cut(s)	536
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	3 cut(s)	45, 378, 445
TasI	AATT	4 cut(s)	16, 459, 539, 593
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	3 cut(s)	127, 409, 557
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	4 cut(s)	100, 395, 516, 541
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	5 cut(s)	137, 216, 303, 434, 606
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	4 cut(s)	100, 395, 516, 541
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	3 cut(s)	280, 455, 521
XapI	RAATTY	1 cut(s)	539
XhoI	CTCGAG	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	2 cut(s)	81, 317
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.