Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008010

Physical Location & Seq

Genomic Coordinates Reverse (-)

21305720 .. 21308961

Gene Structure 3242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTTTCCCTCTCCACCTGGTGCCGGTACATAGCCCACAAGCTCGAGTACTCTGCCACTCTCAGCTTGAAGAACTATCACAGAGGTCAAATCACGGACAAAGAAATGGGTGATGCTCTTTTTAAAAATCTATTTCAGGGAAGGCTGACATACTTGCATTGGAATAAAGGAGAGGAGATGGCCCCTAGTATAGGGGCACAAGGGGGAACTCTTCTTGTTCGGAAGATACCAGCTGCAGATCCAAGGCGTGTCTTTGTTGGGGATGTAGTGGTCTTGAAGGACCCCGAGAAACCAGATAATTATCTTGTCAGAAGGTTGGCTGCAATTGAAGGGTATGAAATGTTGTCTACGGATGAAAAGGATGAGCCCTTTGTCCTTGACAAGGATGAATGCTGGGTGCTGGCTGATAATGAAAGTTTGAAGCCCAAGGAAGCCAATGACAGTCGAAACTTTGGGCCAGTTTCCATGACAGGCATAGTTGGCAGAGTCATATATTGTTTACGAACAGCTGTCGATCATGGCCCCGTGCAGAACAGCCATTCTAGCATGCGAAAGGATGCACCAGTTCTACAAGTTGAATTGGATGTCGATGAGATGGCAAAAAACCACAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

206

Amino Acids

23.09

Weight (kDa)

6.08

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06200 AT1G06200 AT2G31140
fragaria_vesca	FvH4_2g21360 FvH4_2g21360 FvH4_2g21360
malus_domestica	MD05G1196300.v1.1 MD10G1183600.v1.1
prunus_persica	Prupe.8G222700_v2.0.a1 Prupe.8G222700_v2.0.a1
pyrus_communis	pycom05g18330 pycom10g15860
rosa_chinensis	RchiOBHm_Chr6g0287951
rosa_laevigata	RLG00000012453
rosa_multiflora	Rmu_sc0000042.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180640 Rroxscaffold_7G00180900
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302900 Rh6BG309100 Rh6CG300600 Rh6CG316800 Rh6DG301600
rosa_wichuraiana	Rw6G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	233
AdeI	CACNNNGTG	1 cut(s)	21
AfaI	GTAC	2 cut(s)	29, 50
AfiI	CCNNNNNNNGG	3 cut(s)	24, 191, 382
AgsI	TTSAA	5 cut(s)	70, 277, 329, 421, 578
AjnI	CCWGG	1 cut(s)	17
AluBI	AGCT	4 cut(s)	43, 66, 233, 509
AluI	AGCT	4 cut(s)	43, 66, 233, 509
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	2 cut(s)	44, 284
AoxI	GGCC	3 cut(s)	180, 455, 520
ApeKI	GCWGC	2 cut(s)	233, 320
AspS9I	GGNCC	4 cut(s)	181, 280, 455, 521
AsuHPI	GGTGA	1 cut(s)	122
AvaI	CYCGRG	2 cut(s)	44, 284
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	220, 307
BccI	CCATC	2 cut(s)	172, 589
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	1 cut(s)	19
BfaI	CTAG	2 cut(s)	186, 543
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	2 cut(s)	234, 321
BlsI	GCNGC	2 cut(s)	235, 322
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	2 cut(s)	44, 284
BmgT120I	GGNCC	4 cut(s)	181, 280, 455, 521
BmiI	GGNNCC	4 cut(s)	23, 183, 282, 523
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	2 cut(s)	103, 547
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	242, 426
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 191, 382
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	458, 563
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	242, 426
BseGI	GGATG	6 cut(s)	268, 358, 367, 391, 562, 589
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	3 cut(s)	24, 191, 382
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	2 cut(s)	458, 563
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	220, 307
BseYI	CCCAGC	1 cut(s)	393
BsgI	GTGCAG	1 cut(s)	548
BshFI	GGCC	3 cut(s)	182, 457, 522
BshNI	GGYRCC	1 cut(s)	21
BsiHKCI	CYCGRG	2 cut(s)	44, 284
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	3 cut(s)	24, 191, 382
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	3 cut(s)	182, 457, 522
BsoBI	CYCGRG	2 cut(s)	44, 284
Bsp1286I	GDGCHC	2 cut(s)	199, 369
Bsp143I	GATC	2 cut(s)	238, 514
BspANI	GGCC	3 cut(s)	182, 457, 522
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	4 cut(s)	23, 183, 282, 523
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	458, 563
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	242, 426
BssMI	GATC	2 cut(s)	238, 514
BssT1I	CCWWGG	2 cut(s)	242, 426
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	402, 548
BstDEI	CTNAG	1 cut(s)	62
BstENI	CCTNNNNNAGG	2 cut(s)	189, 380
BstF5I	GGATG	6 cut(s)	268, 358, 367, 391, 562, 589
BstKTI	GATC	2 cut(s)	241, 517
BstMBI	GATC	2 cut(s)	238, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	480, 543
BstNI	CCWGG	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	220, 307
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	182, 457, 522
BtsCI	GGATG	6 cut(s)	268, 358, 367, 391, 562, 589
Cac8I	GCNNGC	2 cut(s)	402, 548
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	4 cut(s)	181, 280, 455, 521
CsiI	ACCWGGT	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	28, 49
CviAII	CATG	3 cut(s)	466, 518, 547
CviQI	GTAC	2 cut(s)	28, 49
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	2 cut(s)	240, 516
DpnII	GATC	2 cut(s)	238, 514
DraI	TTTAAA	1 cut(s)	124
DraIII	CACNNNGTG	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	242, 426
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	280
Eco88I	CYCGRG	2 cut(s)	44, 284
EcoNI	CCTNNNNNAGG	2 cut(s)	189, 380
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	17
EcoT14I	CCWWGG	2 cut(s)	242, 426
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	2 cut(s)	242, 426
FaeI	CATG	3 cut(s)	469, 521, 550
FatI	CATG	3 cut(s)	465, 517, 546
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	2 cut(s)	234, 321
FokI	GGATG	6 cut(s)	275, 365, 374, 398, 569, 596
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	2 cut(s)	234, 321
FspBI	CTAG	2 cut(s)	186, 543
GluI	GCNGC	2 cut(s)	234, 321
GsaI	CCCAGC	1 cut(s)	397
HaeIII	GGCC	3 cut(s)	182, 457, 522
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	3 cut(s)	469, 521, 550
HinfI	GANTC	1 cut(s)	486
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	348, 500
Hpy188I	TCNGA	2 cut(s)	222, 311
Hpy188III	TCNNGA	1 cut(s)	274
Hpy8I	GTNNAC	2 cut(s)	348, 500
HpyAV	CCTTC	4 cut(s)	135, 271, 306, 323
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4V	TGCA	5 cut(s)	157, 236, 323, 529, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	480, 543
HpyF3I	CTNAG	1 cut(s)	62
Hsp92II	CATG	3 cut(s)	469, 521, 550
Kzo9I	GATC	2 cut(s)	238, 514
Lsp1109I	GCAGC	2 cut(s)	220, 307
LweI	GCATC	2 cut(s)	103, 547
MabI	ACCWGGT	1 cut(s)	17
MaeI	CTAG	2 cut(s)	186, 543
MalI	GATC	2 cut(s)	240, 516
MboI	GATC	2 cut(s)	238, 514
MboII	GAAGA	3 cut(s)	82, 203, 235
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	199, 369
MluCI	AATT	3 cut(s)	298, 324, 578
MlyI	GAGTC	1 cut(s)	495
MnlI	CCTC	3 cut(s)	20, 77, 166
MseI	TTAA	1 cut(s)	123
MspA1I	CMGCKG	2 cut(s)	233, 509
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	19
MunI	CAATTG	1 cut(s)	324
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	2 cut(s)	480, 543
NdeII	GATC	2 cut(s)	238, 514
NlaIII	CATG	3 cut(s)	469, 521, 550
NlaIV	GGNNCC	4 cut(s)	23, 183, 282, 523
NspI	RCATGY	1 cut(s)	550
PaeI	GCATGC	1 cut(s)	550
PaeR7I	CTCGAG	1 cut(s)	44
PctI	GAATGC	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	235, 322
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	4 cut(s)	23, 183, 282, 523
PspPI	GGNCC	4 cut(s)	181, 280, 455, 521
PspPPI	RGGWCCY	1 cut(s)	280
PspXI	VCTCGAGB	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	238
PvuII	CAGCTG	2 cut(s)	233, 509
RsaI	GTAC	2 cut(s)	29, 50
RsaNI	GTAC	2 cut(s)	28, 49
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	234, 321
Sau3AI	GATC	2 cut(s)	238, 514
Sau96I	GGNCC	4 cut(s)	181, 280, 455, 521
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	2 cut(s)	199, 369
SetI	ASST	7 cut(s)	20, 45, 68, 88, 235, 317, 511
SexAI	ACCWGGT	1 cut(s)	17
SfaNI	GCATC	2 cut(s)	103, 547
SfcI	CTRYAG	1 cut(s)	234
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	280
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	3 cut(s)	298, 324, 578
SspMI	CTAG	2 cut(s)	186, 543
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	2 cut(s)	242, 426
TaaI	ACNGT	1 cut(s)	443
TaqI	TCGA	4 cut(s)	45, 445, 513, 588
TasI	AATT	3 cut(s)	298, 324, 578
TatI	WGTACW	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseI	GCWGC	2 cut(s)	233, 320
TspDTI	ATGAA	4 cut(s)	351, 369, 402, 426
TspGWI	ACGGA	2 cut(s)	110, 365
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	2 cut(s)	189, 380
XceI	RCATGY	1 cut(s)	550
XhoI	CTCGAG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	347
XspI	CTAG	2 cut(s)	186, 543
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.