Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008010

Physical Location & Seq

Genomic Coordinates Reverse (-)

17763937 .. 17767816

Gene Structure 3880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21360.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTTTCCCTTGGCACCTGGTTCCGATACATAGCCCACAAGCTTGAATACTCTGCCACCATCAGCTGGAAGAACTATAAAAGAGGTCAAATCACAGACAGAGAGCTTGGTGATGCCGTTTGGAAAAACCTGTTCCAGGGAAAATTGACATACTTGCACTGGAACAAAGGAGCAGAGATGGCCCCAAGTATAGGTGATCAAGGGGGAACTCTCCTTGTCAGGAAGTTACCAGCTGCAGACCCCAGGCGTGTTTTTGTTGGGGATGTAGTGGTCTTGAAGGACCCTGATAATCCAGATAATTATTTGGTGAGAAGATTGGCTGCGGTTGAAGGTTATGAAATGTTGTCCACTGATGAAAAGGATGATCCTTTTGTCCTTGAAAAGGACGAATGCTGGGTGTTGGCGGATAATGAAGCTTTGAAGCCTAAGGAAGCCAATGATAGTCGAAAGTTTGGTCCTGTTTCAATGACGGACATAGTTGGTAGAGTCATATATTGTCTACGGACAGCTGTTGATCATGGCCCTGTTCAGAATAGTCATTTTAGCATGAGAAAGGATTCGCCTGTGCTGGAAGTTGAGTTGGATGTCGATGAGATGGCAAAAAACCACAAGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

206

Amino Acids

23.27

Weight (kDa)

5.77

Isoelectric Point (pI)

26.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06200 AT1G06200 AT2G31140
fragaria_vesca	FvH4_2g21360 FvH4_2g21360 FvH4_2g21360
malus_domestica	MD05G1196300.v1.1 MD10G1183600.v1.1
prunus_persica	Prupe.8G222700_v2.0.a1 Prupe.8G222700_v2.0.a1
pyrus_communis	pycom05g18330 pycom10g15860
rosa_chinensis	RchiOBHm_Chr6g0287951
rosa_laevigata	RLG00000012453
rosa_multiflora	Rmu_sc0000042.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180640 Rroxscaffold_7G00180900
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302900 Rh6BG309100 Rh6CG300600 Rh6CG316800 Rh6DG301600
rosa_wichuraiana	Rw6G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccI	GTMKAC	1 cut(s)	499
AciI	CCGC	2 cut(s)	323, 404
AclWI	GGATC	1 cut(s)	359
AfiI	CCNNNNNNNGG	4 cut(s)	66, 136, 191, 382
AgsI	TTSAA	6 cut(s)	47, 277, 329, 380, 421, 465
AjnI	CCWGG	3 cut(s)	17, 135, 242
AluBI	AGCT	6 cut(s)	43, 66, 106, 233, 416, 509
AluI	AGCT	6 cut(s)	43, 66, 106, 233, 416, 509
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	2 cut(s)	180, 520
ApeKI	GCWGC	2 cut(s)	233, 320
ArsI	GACNNNNNNTTYG	2 cut(s)	439, 471
Asp700I	GAANNNNTTC	1 cut(s)	556
AspS9I	GGNCC	4 cut(s)	181, 280, 455, 521
AsuHPI	GGTGA	3 cut(s)	122, 206, 319
AvaII	GGWCC	2 cut(s)	280, 455
AxyI	CCTNAGG	1 cut(s)	426
BanI	GGYRCC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	220, 307
BccI	CCATC	3 cut(s)	68, 172, 589
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	3 cut(s)	19, 137, 244
BclI	TGATCA	2 cut(s)	196, 514
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	2 cut(s)	234, 321
BlsI	GCNGC	2 cut(s)	235, 322
Bme1390I	CCNGG	3 cut(s)	19, 137, 244
Bme18I	GGWCC	2 cut(s)	280, 455
BmgT120I	GGNCC	4 cut(s)	181, 280, 455, 521
BmiI	GGNNCC	4 cut(s)	16, 23, 183, 282
BmrFI	CCNGG	3 cut(s)	19, 137, 244
BmsI	GCATC	1 cut(s)	103
BsaJI	CCNNGG	3 cut(s)	10, 136, 242
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 136, 191, 382
Bse1I	ACTGG	1 cut(s)	164
Bse21I	CCTNAGG	1 cut(s)	426
BseBI	CCWGG	3 cut(s)	19, 137, 244
BseDI	CCNNGG	3 cut(s)	10, 136, 242
BseGI	GGATG	3 cut(s)	268, 367, 589
BseLI	CCNNNNNNNGG	4 cut(s)	66, 136, 191, 382
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	220, 307
BseYI	CCCAGC	1 cut(s)	393
BshFI	GGCC	2 cut(s)	182, 522
BshNI	GGYRCC	1 cut(s)	14
BslI	CCNNNNNNNGG	4 cut(s)	66, 136, 191, 382
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	182, 522
Bsp143I	GATC	3 cut(s)	196, 364, 514
BspACI	CCGC	2 cut(s)	323, 404
BspANI	GGCC	2 cut(s)	182, 522
BspLI	GGNNCC	4 cut(s)	16, 23, 183, 282
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	10, 136, 242
BssMI	GATC	3 cut(s)	196, 364, 514
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	3 cut(s)	19, 137, 244
BstDEI	CTNAG	1 cut(s)	426
BstENI	CCTNNNNNAGG	2 cut(s)	134, 380
BstF5I	GGATG	3 cut(s)	268, 367, 589
BstKTI	GATC	3 cut(s)	199, 367, 517
BstMBI	GATC	3 cut(s)	196, 364, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	3 cut(s)	19, 137, 244
BstSCI	CCNGG	3 cut(s)	17, 135, 242
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	220, 307
Bsu36I	CCTNAGG	1 cut(s)	426
BsuRI	GGCC	2 cut(s)	182, 522
BtsCI	GGATG	3 cut(s)	268, 367, 589
BtsIMutI	CAGTG	2 cut(s)	157, 348
Cfr13I	GGNCC	4 cut(s)	181, 280, 455, 521
CsiI	ACCWGGT	1 cut(s)	17
CviAII	CATG	2 cut(s)	518, 547
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	3 cut(s)	198, 366, 516
DpnII	GATC	3 cut(s)	196, 364, 514
EciI	GGCGGA	1 cut(s)	419
Eco130I	CCWWGG	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	280, 455
Eco81I	CCTNAGG	1 cut(s)	426
EcoNI	CCTNNNNNAGG	2 cut(s)	134, 380
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	3 cut(s)	17, 135, 242
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	2 cut(s)	521, 550
FatI	CATG	2 cut(s)	517, 546
FbaI	TGATCA	2 cut(s)	196, 514
FblI	GTMKAC	1 cut(s)	499
Fnu4HI	GCNGC	2 cut(s)	234, 321
FokI	GGATG	3 cut(s)	275, 374, 596
Fsp4HI	GCNGC	2 cut(s)	234, 321
GluI	GCNGC	2 cut(s)	234, 321
GsaI	CCCAGC	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	182, 522
Hin1II	CATG	2 cut(s)	521, 550
HindIII	AAGCTT	2 cut(s)	41, 414
HinfI	GANTC	2 cut(s)	486, 557
HphI	GGTGA	3 cut(s)	122, 206, 319
Hpy166II	GTNNAC	2 cut(s)	348, 500
Hpy188I	TCNGA	2 cut(s)	26, 531
Hpy188III	TCNNGA	3 cut(s)	220, 274, 293
Hpy8I	GTNNAC	2 cut(s)	348, 500
HpyAV	CCTTC	2 cut(s)	271, 323
HpyCH4V	TGCA	2 cut(s)	157, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	2 cut(s)	521, 550
Ksp22I	TGATCA	2 cut(s)	196, 514
Kzo9I	GATC	3 cut(s)	196, 364, 514
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	2 cut(s)	220, 307
LweI	GCATC	1 cut(s)	103
MabI	ACCWGGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	3 cut(s)	198, 366, 516
MboI	GATC	3 cut(s)	196, 364, 514
MboII	GAAGA	2 cut(s)	82, 324
MluCI	AATT	2 cut(s)	143, 298
MlyI	GAGTC	1 cut(s)	495
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	556
MspA1I	CMGCKG	3 cut(s)	66, 233, 509
MspR9I	CCNGG	3 cut(s)	19, 137, 244
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	3 cut(s)	19, 137, 244
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	3 cut(s)	196, 364, 514
NlaIII	CATG	2 cut(s)	521, 550
NlaIV	GGNNCC	4 cut(s)	16, 23, 183, 282
PctI	GAATGC	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	557
PflMI	CCANNNNNTGG	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	235, 322
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	3 cut(s)	17, 135, 242
PspFI	CCCAGC	1 cut(s)	393
PspGI	CCWGG	3 cut(s)	17, 135, 242
PspN4I	GGNNCC	4 cut(s)	16, 23, 183, 282
PspPI	GGNCC	4 cut(s)	181, 280, 455, 521
PspPPI	RGGWCCY	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	238
PvuII	CAGCTG	3 cut(s)	66, 233, 509
SatI	GCNGC	2 cut(s)	234, 321
Sau3AI	GATC	3 cut(s)	196, 364, 514
Sau96I	GGNCC	4 cut(s)	181, 280, 455, 521
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	3 cut(s)	19, 137, 244
SexAI	ACCWGGT	1 cut(s)	17
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	280, 455
Sse9I	AATT	2 cut(s)	143, 298
SsiI	CCGC	2 cut(s)	323, 404
StyD4I	CCNGG	3 cut(s)	17, 135, 242
StyI	CCWWGG	1 cut(s)	10
TaqI	TCGA	2 cut(s)	445, 588
TasI	AATT	2 cut(s)	143, 298
TfiI	GAWTC	1 cut(s)	557
TscAI	CASTG	2 cut(s)	164, 355
TseI	GCWGC	2 cut(s)	233, 320
TspDTI	ATGAA	3 cut(s)	351, 369, 426
TspGWI	ACGGA	2 cut(s)	485, 517
TspRI	CASTG	2 cut(s)	164, 355
Van91I	CCANNNNNTGG	1 cut(s)	66
VpaK11BI	GGWCC	2 cut(s)	280, 455
XagI	CCTNNNNNAGG	2 cut(s)	134, 380
XmiI	GTMKAC	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.