Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008010

Physical Location & Seq

Genomic Coordinates Forward (+)

13269889 .. 13271811

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTTCAATCTCGACTTGGTTCCGATACATGGCTCACAAGCTCGAGTATTCCCTCACTCTCAGTCTCAAGAGTCATAGGAGTAATAAACTGAGTGACCGGGAACTTATTCAAATAATCTGCAAGAATCTGTTCTATGGGAAAATAACCTACTTACACTCGGATAAAGGACCAGAAATGTCACCAACCATGACAGCAAATGAAAACACACTTCTTATTCGTAAGATACCAATTGCTAATACCAGGTTTGTATTCATTGGAGATGCTGTCGTCTTAAAGGATCCAAACGATTCAGATAAGTATCTGGTAAGAAGATTAGCAGCTGTAGAAGGATTCGAAATGGTATCGGGTGATGAAAAAGAGGAGCCTTTTGTTCTTGAGAAGAATCAGTGTTGGGTAACAGCTGAAAACCAGGAGCTCAAAGCTAAGGAAGCATATGATAGTAGAACATTTGGTCCAGTTTCAACAGCAGACATTGTTGGAAGAGCTATATACTGTCTGAGAACAGCCGTCGATCACGGACCTGTTCGAAACAGCCAAACTGCAATGGGACAAGATTCTCCAATCCTGGCCGTGGAATTGGACGTGGACGAGATGGCTAAGAACCATAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

205

Amino Acids

23.13

Weight (kDa)

6.22

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06200 AT1G06200 AT2G31140
fragaria_vesca	FvH4_2g21360 FvH4_2g21360 FvH4_2g21360
malus_domestica	MD05G1196300.v1.1 MD10G1183600.v1.1
prunus_persica	Prupe.8G222700_v2.0.a1 Prupe.8G222700_v2.0.a1
pyrus_communis	pycom05g18330 pycom10g15860
rosa_chinensis	RchiOBHm_Chr6g0287951
rosa_laevigata	RLG00000012453
rosa_multiflora	Rmu_sc0000042.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180640 Rroxscaffold_7G00180900
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302900 Rh6BG309100 Rh6CG300600 Rh6CG316800 Rh6DG301600
rosa_wichuraiana	Rw6G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	275, 288
AcoI	YGGCCR	1 cut(s)	570
AfiI	CCNNNNNNNGG	2 cut(s)	31, 574
AgsI	TTSAA	3 cut(s)	9, 113, 465
AjiI	CACGTC	1 cut(s)	586
AjnI	CCWGG	3 cut(s)	242, 411, 567
AloI	GAACNNNNNNTCC	2 cut(s)	439, 471
AluBI	AGCT	6 cut(s)	43, 323, 404, 418, 425, 488
AluI	AGCT	6 cut(s)	43, 323, 404, 418, 425, 488
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	275, 288
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	570
ApeKI	GCWGC	1 cut(s)	320
Asp700I	GAANNNNTTC	2 cut(s)	108, 131
AspS9I	GGNCC	3 cut(s)	170, 455, 521
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	174, 362
AsuII	TTCGAA	2 cut(s)	336, 529
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	3 cut(s)	170, 455, 521
BamHI	GGATCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	589
BceAI	ACGGC	2 cut(s)	494, 557
BciT130I	CCWGG	3 cut(s)	244, 413, 569
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	324
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	4 cut(s)	101, 244, 413, 569
Bme18I	GGWCC	3 cut(s)	170, 455, 521
BmeT110I	CYCGRG	1 cut(s)	44
BmgBI	CACGTC	1 cut(s)	586
BmgT120I	GGNCC	3 cut(s)	170, 455, 521
BmiI	GGNNCC	3 cut(s)	23, 282, 366
BmrFI	CCNGG	4 cut(s)	101, 244, 413, 569
BmsI	GCATC	1 cut(s)	253
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu14I	TTCGAA	2 cut(s)	336, 529
BpuEI	CTTGAG	2 cut(s)	53, 398
BpuMI	CCSGG	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	573
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 574
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	3 cut(s)	244, 413, 569
BseDI	CCNNGG	1 cut(s)	573
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	31, 574
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	3 cut(s)	76, 83, 491
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	332
BshFI	GGCC	1 cut(s)	572
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	2 cut(s)	31, 574
BsmAI	GTCTC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	564
BsnI	GGCC	1 cut(s)	572
BsoBI	CYCGRG	1 cut(s)	44
Bsp119I	TTCGAA	2 cut(s)	336, 529
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	280, 514
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	3 cut(s)	75, 84, 492
BspLI	GGNNCC	3 cut(s)	23, 282, 366
BspPI	GGATC	2 cut(s)	275, 288
BspQI	GCTCTTC	1 cut(s)	478
BspT104I	TTCGAA	2 cut(s)	336, 529
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	2 cut(s)	280, 514
Bst2UI	CCWGG	3 cut(s)	244, 413, 569
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	478
BstBI	TTCGAA	2 cut(s)	336, 529
BstDEI	CTNAG	5 cut(s)	62, 92, 426, 500, 600
BstDSI	CCRYGG	1 cut(s)	573
BstKTI	GATC	2 cut(s)	283, 517
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	280, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	3 cut(s)	244, 413, 569
BstSCI	CCNGG	4 cut(s)	99, 242, 411, 567
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	572
BtgI	CCRYGG	1 cut(s)	573
BtrI	CACGTC	1 cut(s)	586
BtsIMutI	CAGTG	1 cut(s)	395
Cfr13I	GGNCC	3 cut(s)	170, 455, 521
CsiI	ACCWGGT	1 cut(s)	242
CviAII	CATG	2 cut(s)	31, 190
DdeI	CTNAG	5 cut(s)	62, 92, 426, 500, 600
DpnI	GATC	2 cut(s)	282, 516
DpnII	GATC	2 cut(s)	280, 514
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Ecl136II	GAGCTC	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	3 cut(s)	170, 455, 521
Eco53kI	GAGCTC	1 cut(s)	418
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	418
EcoRII	CCWGG	3 cut(s)	242, 411, 567
EcoT38I	GRGCYC	1 cut(s)	420
FaeI	CATG	2 cut(s)	34, 193
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	2 cut(s)	30, 189
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	572
HapII	CCGG	1 cut(s)	100
Hin1II	CATG	2 cut(s)	34, 193
HinfI	GANTC	6 cut(s)	73, 127, 290, 333, 385, 557
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	2 cut(s)	174, 362
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	4 cut(s)	26, 163, 295, 501
Hpy188III	TCNNGA	3 cut(s)	13, 70, 377
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	515
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	2 cut(s)	123, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	5 cut(s)	62, 92, 426, 500, 600
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	2 cut(s)	34, 193
Kzo9I	GATC	2 cut(s)	280, 514
LguI	GCTCTTC	1 cut(s)	478
LmnI	GCTCC	2 cut(s)	364, 415
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	253
MabI	ACCWGGT	1 cut(s)	242
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	95, 180, 397
MalI	GATC	2 cut(s)	282, 516
MboI	GATC	2 cut(s)	280, 514
MboII	GAAGA	3 cut(s)	324, 394, 495
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	2 cut(s)	231, 578
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	2 cut(s)	65, 355
MroXI	GAANNNNTTC	2 cut(s)	108, 131
MseI	TTAA	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	323, 404
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	4 cut(s)	101, 244, 413, 569
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	3 cut(s)	244, 413, 569
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	101
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	2 cut(s)	280, 514
NlaIII	CATG	2 cut(s)	34, 193
NlaIV	GGNNCC	3 cut(s)	23, 282, 366
NmuCI	GTSAC	2 cut(s)	95, 180
NspV	TTCGAA	2 cut(s)	336, 529
PaeR7I	CTCGAG	1 cut(s)	44
PciSI	GCTCTTC	1 cut(s)	478
PdmI	GAANNNNTTC	2 cut(s)	108, 131
PfeI	GAWTC	5 cut(s)	127, 290, 333, 385, 557
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	3 cut(s)	242, 411, 567
PspGI	CCWGG	3 cut(s)	242, 411, 567
PspN4I	GGNNCC	3 cut(s)	23, 282, 366
PspPI	GGNCC	3 cut(s)	170, 455, 521
PspXI	VCTCGAGB	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	280
PvuII	CAGCTG	2 cut(s)	323, 404
SacI	GAGCTC	1 cut(s)	420
SapI	GCTCTTC	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	2 cut(s)	280, 514
Sau96I	GGNCC	3 cut(s)	170, 455, 521
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	4 cut(s)	101, 244, 413, 569
SduI	GDGCHC	1 cut(s)	420
SexAI	ACCWGGT	1 cut(s)	242
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	324
Sfr274I	CTCGAG	1 cut(s)	44
SfuI	TTCGAA	2 cut(s)	336, 529
SinI	GGWCC	3 cut(s)	170, 455, 521
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	3 cut(s)	44, 68, 377
SmoI	CTYRAG	3 cut(s)	44, 68, 377
Sse9I	AATT	2 cut(s)	231, 578
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	4 cut(s)	99, 242, 411, 567
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	5 cut(s)	14, 45, 336, 513, 529
TasI	AATT	2 cut(s)	231, 578
TfiI	GAWTC	5 cut(s)	127, 290, 333, 385, 557
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	395
TseFI	GTSAC	2 cut(s)	95, 180
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	2 cut(s)	95, 180
TspDTI	ATGAA	3 cut(s)	216, 244, 369
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	1 cut(s)	395
VpaK11BI	GGWCC	3 cut(s)	170, 455, 521
XhoI	CTCGAG	1 cut(s)	44
XmnI	GAANNNNTTC	2 cut(s)	108, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.