Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008010

Physical Location & Seq

Genomic Coordinates Forward (+)

19973944 .. 19977543

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCTGTTTGGAAAAAATTTGTTTCAGGGAAAGTTGACATACATGCATTGGAATAAAGGAGCAGAGATGGCCCCTAGTATAGGGGAGCAAGGAGGAACCCTCCTTGTCAGGAAGTTACCAGCTGCAGACCCAAGGCGTGTTTTTGTTGGGGATGTAGTGGTCTTGAAGGACCCTGATAACCCAGATAACTTTTTGGTGAGAAGATTGGCTGCCATAGAAGGGTATGAAATGTTGTCTACGGATGAGAAAGATGATCCTTTTGTCCTTGAAAAAGATGAATGCTGGGTTTTGGCTGATAATGAAGCTTTGAAGGCAAAGGAAGCCAATGATAGTCGAAAGTTTGGTCCGGTTTCCATGACGGACATAGTTGGTAGAGTCATATATTGCCTACGAACAGCTGTTGATCATGGCCCTGTTCAGAATAGTCATTTTAGCATGAGAAAGGATTCGCCTGTCCTGGAAGTTGAATTGGATGTTGATGAGATGGCAAAAAACCACAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

168

Amino Acids

18.83

Weight (kDa)

5.24

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06200 AT1G06200 AT2G31140
fragaria_vesca	FvH4_2g21360 FvH4_2g21360 FvH4_2g21360
malus_domestica	MD05G1196300.v1.1 MD10G1183600.v1.1
prunus_persica	Prupe.8G222700_v2.0.a1 Prupe.8G222700_v2.0.a1
pyrus_communis	pycom05g18330 pycom10g15860
rosa_chinensis	RchiOBHm_Chr6g0287951
rosa_laevigata	RLG00000012453
rosa_multiflora	Rmu_sc0000042.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180640 Rroxscaffold_7G00180900
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302900 Rh6BG309100 Rh6CG300600 Rh6CG316800 Rh6DG301600
rosa_wichuraiana	Rw6G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	236
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	80, 219
AgsI	TTSAA	4 cut(s)	166, 269, 310, 467
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	3 cut(s)	122, 305, 398
AluI	AGCT	3 cut(s)	122, 305, 398
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	2 cut(s)	69, 409
ApeKI	GCWGC	2 cut(s)	122, 209
ApoI	RAATTY	1 cut(s)	16
ArsI	GACNNNNNNTTYG	2 cut(s)	328, 360
Asp700I	GAANNNNTTC	1 cut(s)	445
AspS9I	GGNCC	4 cut(s)	70, 169, 344, 410
AsuHPI	GGTGA	1 cut(s)	208
AvaII	GGWCC	2 cut(s)	169, 344
BbvI	GCAGC	2 cut(s)	109, 196
BccI	CCATC	2 cut(s)	61, 478
BciT130I	CCWGG	1 cut(s)	458
BclI	TGATCA	1 cut(s)	403
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	2 cut(s)	123, 210
BlsI	GCNGC	2 cut(s)	124, 211
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	2 cut(s)	169, 344
BmgT120I	GGNCC	4 cut(s)	70, 169, 344, 410
BmiI	GGNNCC	3 cut(s)	72, 97, 171
BmrFI	CCNGG	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
BsaJI	CCNNGG	1 cut(s)	131
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 219
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	3 cut(s)	157, 247, 478
BseLI	CCNNNNNNNGG	2 cut(s)	80, 219
BseXI	GCAGC	2 cut(s)	109, 196
BseYI	CCCAGC	1 cut(s)	282
BshFI	GGCC	2 cut(s)	71, 411
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	80, 219
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	71, 411
Bsp143I	GATC	2 cut(s)	253, 403
BspANI	GGCC	2 cut(s)	71, 411
BspLI	GGNNCC	3 cut(s)	72, 97, 171
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	2 cut(s)	253, 403
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	458
BstENI	CCTNNNNNAGG	1 cut(s)	78
BstF5I	GGATG	3 cut(s)	157, 247, 478
BstKTI	GATC	2 cut(s)	256, 406
BstMBI	GATC	2 cut(s)	253, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 311, 320
BstNI	CCWGG	1 cut(s)	458
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	109, 196
BsuRI	GGCC	2 cut(s)	71, 411
BtsCI	GGATG	3 cut(s)	157, 247, 478
Cfr13I	GGNCC	4 cut(s)	70, 169, 344, 410
CviAII	CATG	4 cut(s)	43, 355, 407, 436
CviJI	RGCY	9 cut(s)	71, 122, 209, 293, 305, 323, 398, 411, 503
CviKI_1	RGCY	9 cut(s)	71, 122, 209, 293, 305, 323, 398, 411, 503
DpnI	GATC	2 cut(s)	255, 405
DpnII	GATC	2 cut(s)	253, 403
Eco130I	CCWWGG	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	169, 344
EcoNI	CCTNNNNNAGG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	131
EcoT22I	ATGCAT	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	4 cut(s)	46, 358, 410, 439
FatI	CATG	4 cut(s)	42, 354, 406, 435
FbaI	TGATCA	1 cut(s)	403
FblI	GTMKAC	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	123, 210
FokI	GGATG	3 cut(s)	164, 254, 485
Fsp4HI	GCNGC	2 cut(s)	123, 210
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	2 cut(s)	123, 210
GsaI	CCCAGC	1 cut(s)	286
HaeIII	GGCC	2 cut(s)	71, 411
HapII	CCGG	1 cut(s)	347
Hin1II	CATG	4 cut(s)	46, 358, 410, 439
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	2 cut(s)	375, 446
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	2 cut(s)	36, 237
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	2 cut(s)	109, 163
Hpy8I	GTNNAC	2 cut(s)	36, 237
HpyAV	CCTTC	3 cut(s)	160, 212, 304
HpyCH4V	TGCA	2 cut(s)	46, 125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 311, 320
Hsp92II	CATG	4 cut(s)	46, 358, 410, 439
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	253, 403
LmnI	GCTCC	2 cut(s)	59, 85
Lsp1109I	GCAGC	2 cut(s)	109, 196
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	2 cut(s)	255, 405
MboI	GATC	2 cut(s)	253, 403
MboII	GAAGA	1 cut(s)	213
MluCI	AATT	2 cut(s)	16, 467
MlyI	GAGTC	1 cut(s)	384
MnlI	CCTC	2 cut(s)	86, 110
Mph1103I	ATGCAT	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	445
MspA1I	CMGCKG	2 cut(s)	122, 398
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	458
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	3 cut(s)	68, 311, 320
NdeII	GATC	2 cut(s)	253, 403
NlaIII	CATG	4 cut(s)	46, 358, 410, 439
NlaIV	GGNNCC	3 cut(s)	72, 97, 171
NsiI	ATGCAT	1 cut(s)	48
NspI	RCATGY	1 cut(s)	46
PctI	GAATGC	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	446
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	124, 211
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PpuMI	RGGWCCY	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	456
PspFI	CCCAGC	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	456
PspN4I	GGNNCC	3 cut(s)	72, 97, 171
PspPI	GGNCC	4 cut(s)	70, 169, 344, 410
PspPPI	RGGWCCY	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	127
PvuII	CAGCTG	2 cut(s)	122, 398
SatI	GCNGC	2 cut(s)	123, 210
Sau3AI	GATC	2 cut(s)	253, 403
Sau96I	GGNCC	4 cut(s)	70, 169, 344, 410
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	458
SetI	ASST	3 cut(s)	124, 307, 400
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	2 cut(s)	169, 344
Sse9I	AATT	2 cut(s)	16, 467
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	131
TaqI	TCGA	1 cut(s)	334
TasI	AATT	2 cut(s)	16, 467
TfiI	GAWTC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	122, 209
TspDTI	ATGAA	3 cut(s)	240, 291, 315
TspGWI	ACGGA	2 cut(s)	254, 374
VpaK11BI	GGWCC	2 cut(s)	169, 344
XagI	CCTNNNNNAGG	1 cut(s)	78
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	445
XspI	CTAG	1 cut(s)	75
Zsp2I	ATGCAT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.