Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008010

Physical Location & Seq

Genomic Coordinates Reverse (-)

50196786 .. 50200806

Gene Structure 4021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG316800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCATTGGAATAAAGGAGCAGAGATGGCCCCTAGTATAGGGGAACAAGGGGGAACTCTCCTTGTCAGGAAGTTACCAGCTGCAGACCCAAGGCGTGTTTTTGTTGGGGATGTAGTGGTCTTGAAGGACCCTGATAACCCAGATAATTATTTGGTGAGAAGATTGGCTGCCATAGAAGGGTATGAAATGTTGTCTACGGATGAGAAAGATGATCCTTTTGTCCTTGAAAAAGATGAATGCTGGGTTTTGGCTGATAATGAAACTTTGAAGGCAAAGGAAGCCAATGATAGTCGAAAGTTTGGTCCTGTTTCCATGACGGACATAGTTGGTAGAGTCATATATTGCCTACGAACAGCTGTTGATCATGGCCCTGTTCAGAATAGTCATTTTAGCATGAGAAAGGATTCGCCTGTCCTGGAAGTTGAATTGGATGTCGATGAGATGGCAAAAAACCACAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

154

Amino Acids

17.25

Weight (kDa)

4.99

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06200 AT1G06200 AT2G31140
fragaria_vesca	FvH4_2g21360 FvH4_2g21360 FvH4_2g21360
malus_domestica	MD05G1196300.v1.1 MD10G1183600.v1.1
prunus_persica	Prupe.8G222700_v2.0.a1 Prupe.8G222700_v2.0.a1
pyrus_communis	pycom05g18330 pycom10g15860
rosa_chinensis	RchiOBHm_Chr6g0287951
rosa_laevigata	RLG00000012453
rosa_multiflora	Rmu_sc0000042.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180640 Rroxscaffold_7G00180900
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302900 Rh6BG309100 Rh6CG300600 Rh6CG316800 Rh6DG301600
rosa_wichuraiana	Rw6G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	194
AclWI	GGATC	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	38, 177
AgsI	TTSAA	4 cut(s)	124, 227, 268, 425
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	2 cut(s)	80, 356
AluI	AGCT	2 cut(s)	80, 356
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	2 cut(s)	27, 367
ApeKI	GCWGC	2 cut(s)	80, 167
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
Asp700I	GAANNNNTTC	1 cut(s)	403
AspS9I	GGNCC	4 cut(s)	28, 127, 302, 368
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	2 cut(s)	127, 302
BbvI	GCAGC	2 cut(s)	67, 154
BccI	CCATC	2 cut(s)	19, 436
BciT130I	CCWGG	1 cut(s)	416
BclI	TGATCA	1 cut(s)	361
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	2 cut(s)	81, 168
BlsI	GCNGC	2 cut(s)	82, 169
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	2 cut(s)	127, 302
BmgT120I	GGNCC	4 cut(s)	28, 127, 302, 368
BmiI	GGNNCC	2 cut(s)	30, 129
BmrFI	CCNGG	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 177
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	3 cut(s)	115, 205, 436
BseLI	CCNNNNNNNGG	2 cut(s)	38, 177
BseXI	GCAGC	2 cut(s)	67, 154
BseYI	CCCAGC	1 cut(s)	240
BshFI	GGCC	2 cut(s)	29, 369
BslI	CCNNNNNNNGG	2 cut(s)	38, 177
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	29, 369
Bsp143I	GATC	2 cut(s)	211, 361
BspANI	GGCC	2 cut(s)	29, 369
BspLI	GGNNCC	2 cut(s)	30, 129
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	2 cut(s)	211, 361
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	416
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	3 cut(s)	115, 205, 436
BstKTI	GATC	2 cut(s)	214, 364
BstMBI	GATC	2 cut(s)	211, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 278
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	67, 154
BsuRI	GGCC	2 cut(s)	29, 369
BtsCI	GGATG	3 cut(s)	115, 205, 436
Cfr13I	GGNCC	4 cut(s)	28, 127, 302, 368
CviAII	CATG	3 cut(s)	313, 365, 394
CviJI	RGCY	7 cut(s)	29, 80, 167, 251, 281, 356, 369
CviKI_1	RGCY	7 cut(s)	29, 80, 167, 251, 281, 356, 369
DpnI	GATC	2 cut(s)	213, 363
DpnII	GATC	2 cut(s)	211, 361
Eco130I	CCWWGG	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	127, 302
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	89
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	3 cut(s)	316, 368, 397
FaiI	YATR	9 cut(s)	38, 173, 183, 314, 323, 338, 340, 366, 395
FatI	CATG	3 cut(s)	312, 364, 393
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	2 cut(s)	81, 168
FokI	GGATG	3 cut(s)	122, 212, 443
Fsp4HI	GCNGC	2 cut(s)	81, 168
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	2 cut(s)	81, 168
GsaI	CCCAGC	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	29, 369
Hin1II	CATG	3 cut(s)	316, 368, 397
HinfI	GANTC	2 cut(s)	333, 404
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	1 cut(s)	378
Hpy188III	TCNNGA	2 cut(s)	67, 121
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	118, 170, 262
HpyCH4V	TGCA	2 cut(s)	4, 83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 278
Hsp92II	CATG	3 cut(s)	316, 368, 397
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	211, 361
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	2 cut(s)	67, 154
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	2 cut(s)	213, 363
MboI	GATC	2 cut(s)	211, 361
MboII	GAAGA	1 cut(s)	171
MluCI	AATT	2 cut(s)	145, 425
MlyI	GAGTC	1 cut(s)	342
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	403
MspA1I	CMGCKG	2 cut(s)	80, 356
MspR9I	CCNGG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	26, 278
NdeII	GATC	2 cut(s)	211, 361
NlaIII	CATG	3 cut(s)	316, 368, 397
NlaIV	GGNNCC	2 cut(s)	30, 129
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	404
PfoI	TCCNGGA	1 cut(s)	414
PkrI	GCNGC	2 cut(s)	82, 169
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	30, 129
PspPI	GGNCC	4 cut(s)	28, 127, 302, 368
PspPPI	RGGWCCY	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	85
PvuII	CAGCTG	2 cut(s)	80, 356
SatI	GCNGC	2 cut(s)	81, 168
Sau3AI	GATC	2 cut(s)	211, 361
Sau96I	GGNCC	4 cut(s)	28, 127, 302, 368
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	2 cut(s)	82, 358
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	2 cut(s)	127, 302
Sse9I	AATT	2 cut(s)	145, 425
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	89
TaqI	TCGA	2 cut(s)	292, 435
TasI	AATT	2 cut(s)	145, 425
TfiI	GAWTC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	80, 167
TspDTI	ATGAA	3 cut(s)	198, 249, 273
TspGWI	ACGGA	2 cut(s)	212, 332
VpaK11BI	GGWCC	2 cut(s)	127, 302
XagI	CCTNNNNNAGG	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.