Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008010

Physical Location & Seq

Genomic Coordinates Reverse (-)

20160344 .. 20164335

Gene Structure 3992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G222700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTTTCCCTCCCAACCTGGTTCCGGTACATAGCCCACAAGCTGGAATACTCGGCCACTATCAGCTGGAAGAACTATCAAAGAGGTCAAATCACGGACAGAGAACTAGGTGATGCCGTTTGGAAAAATCTATTTCAGGGAAAGTTAACGTACTTGCATTGGAATAAAGGAGAGGAGATGGCCCCTAGTATAGGTGCGCAAGGGGGTACTCTTCTTGTCCGGAAGATACCAGCTGCAGACCCAAGGCGTGTTTTTGTTGGGGATGTAGTGGTCTTGAAGGACCCTGAGAAGGCAGATAATTATCTGGTGAGAAGATTGGCTGCTATTGAAGGGTATGAAATGTTGTCTACTGATGAAAAGGATGAGCCTTTTGTTCTTGAACAGGATGAATGCTGGGTGTTGGCTGATAATGAAAGTTTGAAGCCCAAGGAAGCCAATGACAGTCGGAAATTTGGGCCGGTTTCCATGACAGACATAGTTGGCAGAGTCATATATTGCCTACGAACAGCTGTGGATCATGGCCCTGTGCAGAACAGTCGTTCCAGCATGCGAAAGGATACACCAGTGCTCCAAGTTGAATTGGATGTCGATGAGATGGCAAAAAATCACAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

206

Amino Acids

23.33

Weight (kDa)

5.86

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06200 AT1G06200 AT2G31140
fragaria_vesca	FvH4_2g21360 FvH4_2g21360 FvH4_2g21360
malus_domestica	MD05G1196300.v1.1 MD10G1183600.v1.1
prunus_persica	Prupe.8G222700_v2.0.a1 Prupe.8G222700_v2.0.a1
pyrus_communis	pycom05g18330 pycom10g15860
rosa_chinensis	RchiOBHm_Chr6g0287951
rosa_laevigata	RLG00000012453
rosa_multiflora	Rmu_sc0000042.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180640 Rroxscaffold_7G00180900
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302900 Rh6BG309100 Rh6CG300600 Rh6CG316800 Rh6DG301600
rosa_wichuraiana	Rw6G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	198
AccB7I	CCANNNNNTGG	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	347
AccIII	TCCGGA	1 cut(s)	219
AclWI	GGATC	1 cut(s)	522
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	449
AfaI	GTAC	3 cut(s)	29, 152, 208
AfiI	CCNNNNNNNGG	4 cut(s)	24, 43, 191, 289
AgsI	TTSAA	5 cut(s)	277, 329, 380, 421, 578
AjnI	CCWGG	1 cut(s)	17
AloI	GAACNNNNNNTCC	2 cut(s)	524, 556
AluBI	AGCT	4 cut(s)	43, 66, 233, 509
AluI	AGCT	4 cut(s)	43, 66, 233, 509
Alw21I	GWGCWC	1 cut(s)	570
AlwI	GGATC	1 cut(s)	522
Aor13HI	TCCGGA	1 cut(s)	219
AoxI	GGCC	4 cut(s)	54, 180, 455, 520
ApeKI	GCWGC	2 cut(s)	233, 320
ApoI	RAATTY	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	4 cut(s)	181, 280, 455, 521
AsuHPI	GGTGA	2 cut(s)	122, 319
AvaII	GGWCC	1 cut(s)	280
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	2 cut(s)	220, 307
BccI	CCATC	2 cut(s)	172, 589
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	1 cut(s)	19
BciVI	GTATCC	1 cut(s)	550
BfaI	CTAG	2 cut(s)	107, 186
BfmI	CTRYAG	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	550
BisI	GCNGC	2 cut(s)	234, 321
BlsI	GCNGC	2 cut(s)	235, 322
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	4 cut(s)	181, 280, 455, 521
BmiI	GGNNCC	3 cut(s)	23, 183, 282
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	242, 426
BsaWI	WCCGGW	2 cut(s)	24, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 43, 191, 289
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	563
Bse8I	GATNNNNATC	1 cut(s)	300
BseAI	TCCGGA	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	242, 426
BseGI	GGATG	4 cut(s)	268, 367, 391, 589
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	4 cut(s)	24, 43, 191, 289
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	220, 307
BseYI	CCCAGC	1 cut(s)	393
BsgI	GTGCAG	1 cut(s)	548
BshFI	GGCC	4 cut(s)	56, 182, 457, 522
BsiHKAI	GWGCWC	1 cut(s)	570
BsiSI	CCGG	3 cut(s)	25, 220, 458
BslI	CCNNNNNNNGG	4 cut(s)	24, 43, 191, 289
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	4 cut(s)	56, 182, 457, 522
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp13I	TCCGGA	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	514
BspANI	GGCC	4 cut(s)	56, 182, 457, 522
BspCNI	CTCAG	1 cut(s)	277
BspEI	TCCGGA	1 cut(s)	219
BspLI	GGNNCC	3 cut(s)	23, 183, 282
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	522
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	563
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	242, 426
BssMI	GATC	1 cut(s)	514
BssT1I	CCWWGG	2 cut(s)	242, 426
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	2 cut(s)	443, 536
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	1 cut(s)	285
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	4 cut(s)	268, 367, 391, 589
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	517
BstMBI	GATC	1 cut(s)	514
BstNI	CCWGG	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	220, 307
BsuI	GTATCC	1 cut(s)	550
BsuRI	GGCC	4 cut(s)	56, 182, 457, 522
BtsCI	GGATG	4 cut(s)	268, 367, 391, 589
BtsIMutI	CAGTG	1 cut(s)	570
Cac8I	GCNNGC	1 cut(s)	548
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	4 cut(s)	181, 280, 455, 521
CsiI	ACCWGGT	1 cut(s)	17
Csp6I	GTAC	3 cut(s)	28, 151, 207
CviAII	CATG	3 cut(s)	466, 518, 547
CviQI	GTAC	3 cut(s)	28, 151, 207
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	516
DpnII	GATC	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	242, 426
Eco47I	GGWCC	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	17
EcoT14I	CCWWGG	2 cut(s)	242, 426
ErhI	CCWWGG	2 cut(s)	242, 426
FaeI	CATG	3 cut(s)	469, 521, 550
FaiI	YATR	9 cut(s)	32, 191, 336, 467, 476, 491, 493, 519, 548
FatI	CATG	3 cut(s)	465, 517, 546
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	2 cut(s)	234, 321
FokI	GGATG	4 cut(s)	275, 374, 398, 596
Fsp4HI	GCNGC	2 cut(s)	234, 321
FspBI	CTAG	2 cut(s)	107, 186
FspI	TGCGCA	1 cut(s)	198
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	2 cut(s)	234, 321
GsaI	CCCAGC	1 cut(s)	397
HaeIII	GGCC	4 cut(s)	56, 182, 457, 522
HapII	CCGG	3 cut(s)	25, 220, 458
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	3 cut(s)	469, 521, 550
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	486
HpaI	GTTAAC	1 cut(s)	147
HpaII	CCGG	3 cut(s)	25, 220, 458
HphI	GGTGA	2 cut(s)	122, 319
Hpy166II	GTNNAC	2 cut(s)	147, 348
Hpy188I	TCNGA	1 cut(s)	447
Hpy188III	TCNNGA	3 cut(s)	220, 274, 377
Hpy8I	GTNNAC	2 cut(s)	147, 348
HpyAV	CCTTC	3 cut(s)	271, 283, 323
HpyCH4III	ACNGT	2 cut(s)	443, 536
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	3 cut(s)	157, 236, 529
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	469, 521, 550
HspAI	GCGC	1 cut(s)	197
Kpn2I	TCCGGA	1 cut(s)	219
KspAI	GTTAAC	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	514
LmnI	GCTCC	1 cut(s)	573
Lsp1109I	GCAGC	2 cut(s)	220, 307
LweI	GCATC	1 cut(s)	103
MabI	ACCWGGT	1 cut(s)	17
MaeI	CTAG	2 cut(s)	107, 186
MaeII	ACGT	1 cut(s)	149
MalI	GATC	1 cut(s)	516
MboI	GATC	1 cut(s)	514
MboII	GAAGA	4 cut(s)	82, 203, 235, 324
MhlI	GDGCHC	1 cut(s)	570
MluCI	AATT	3 cut(s)	298, 449, 578
MlyI	GAGTC	1 cut(s)	495
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	3 cut(s)	20, 77, 166
MroI	TCCGGA	1 cut(s)	219
MseI	TTAA	1 cut(s)	146
MspA1I	CMGCKG	3 cut(s)	66, 233, 509
MspI	CCGG	3 cut(s)	25, 220, 458
MspR9I	CCNGG	1 cut(s)	19
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	514
NlaIII	CATG	3 cut(s)	469, 521, 550
NlaIV	GGNNCC	3 cut(s)	23, 183, 282
NmeAIII	GCCGAG	1 cut(s)	32
NsbI	TGCGCA	1 cut(s)	198
NspI	RCATGY	1 cut(s)	550
PaeI	GCATGC	1 cut(s)	550
PctI	GAATGC	1 cut(s)	395
PflMI	CCANNNNNTGG	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	235, 322
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	3 cut(s)	23, 183, 282
PspPI	GGNCC	4 cut(s)	181, 280, 455, 521
PspPPI	RGGWCCY	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	238
PvuII	CAGCTG	3 cut(s)	66, 233, 509
RsaI	GTAC	3 cut(s)	29, 152, 208
RsaNI	GTAC	3 cut(s)	28, 151, 207
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	2 cut(s)	234, 321
Sau3AI	GATC	1 cut(s)	514
Sau96I	GGNCC	4 cut(s)	181, 280, 455, 521
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	570
SetI	ASST	9 cut(s)	20, 45, 68, 88, 112, 152, 196, 235, 511
SexAI	ACCWGGT	1 cut(s)	17
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	280
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	3 cut(s)	298, 449, 578
SspMI	CTAG	2 cut(s)	107, 186
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	2 cut(s)	242, 426
TaaI	ACNGT	2 cut(s)	443, 536
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	588
TasI	AATT	3 cut(s)	298, 449, 578
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	570
TseI	GCWGC	2 cut(s)	233, 320
TspDTI	ATGAA	4 cut(s)	351, 369, 402, 426
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	570
Van91I	CCANNNNNTGG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	449
XceI	RCATGY	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	347
XspI	CTAG	2 cut(s)	107, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.