Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008010

Physical Location & Seq

Genomic Coordinates Forward (+)

48107575 .. 48111595

Gene Structure 4021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG300600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGTTTCCCTATCCACCTGGTTCCGATACATAGCCCACAAGCTCGAATATTCTGCCACTATCAGCTGGAAGAACTATAAAAGAGGTCAAATCACAGACAGAGAACTTGGTGATGCTGTTTGGAAAAATTTGTTTCAGGGAAAGTTGACATACATGCATTGGAATAAAGGAGCAGAGATGGCCCCTAGTATAGGGGAACAAGGGGGAACTCTCCTTGTCAGGAAGTTACCAGCTGCAGACCCAAGGCGTGTTTTTGTTGGGGATGTAGTGGTCTTGAAGGACCCTGATAACCCAGATAATTATTTGGTGAGAAGATTGGCTGCCATAGAAGGGTATGAAATGTTGTCTACGGATGAGAAAGATGATCCTTTTGTCCTTGAAAAAGATGAATGCTGGGTTTTGGCTGATAATGAAACTTTGAAGGCAAAGGTACATGGAATTTTCGAAATCTTGATCATTATGTTCAGACTTATGTATCAAGTATATTTTCCACGTTACTGCATAATTCCTTTTTTTATCCACTTTTTTTTTTTTTATATTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

181

Amino Acids

21.29

Weight (kDa)

6.43

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06200 AT1G06200 AT2G31140
fragaria_vesca	FvH4_2g21360 FvH4_2g21360 FvH4_2g21360
malus_domestica	MD05G1196300.v1.1 MD10G1183600.v1.1
prunus_persica	Prupe.8G222700_v2.0.a1 Prupe.8G222700_v2.0.a1
pyrus_communis	pycom05g18330 pycom10g15860
rosa_chinensis	RchiOBHm_Chr6g0287951
rosa_laevigata	RLG00000012453
rosa_multiflora	Rmu_sc0000042.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180640 Rroxscaffold_7G00180900
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302900 Rh6BG309100 Rh6CG300600 Rh6CG316800 Rh6DG301600
rosa_wichuraiana	Rw6G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	2 cut(s)	127, 438
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	2 cut(s)	191, 330
AgsI	TTSAA	3 cut(s)	277, 380, 421
AjnI	CCWGG	1 cut(s)	17
AluBI	AGCT	3 cut(s)	43, 66, 233
AluI	AGCT	3 cut(s)	43, 66, 233
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	233, 320
ApoI	RAATTY	2 cut(s)	127, 438
AspS9I	GGNCC	2 cut(s)	181, 280
AsuHPI	GGTGA	2 cut(s)	122, 319
AsuII	TTCGAA	1 cut(s)	444
AvaII	GGWCC	1 cut(s)	280
BaeI	ACNNNNGTAYC	2 cut(s)	458, 491
BbvI	GCAGC	2 cut(s)	220, 307
BccI	CCATC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	1 cut(s)	19
BclI	TGATCA	1 cut(s)	453
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	2 cut(s)	234, 321
BlsI	GCNGC	2 cut(s)	235, 322
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	181, 280
BmiI	GGNNCC	3 cut(s)	23, 183, 282
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	103
Bpu14I	TTCGAA	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 330
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	2 cut(s)	268, 358
BseLI	CCNNNNNNNGG	2 cut(s)	191, 330
BseXI	GCAGC	2 cut(s)	220, 307
BseYI	CCCAGC	1 cut(s)	393
BshFI	GGCC	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	191, 330
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	364, 453
BspANI	GGCC	1 cut(s)	182
BspLI	GGNNCC	3 cut(s)	23, 183, 282
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	359
BspT104I	TTCGAA	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	2 cut(s)	364, 453
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	19
BstBI	TTCGAA	1 cut(s)	444
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	268, 358
BstKTI	GATC	2 cut(s)	367, 456
BstMBI	GATC	2 cut(s)	364, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	220, 307
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	268, 358
Cfr13I	GGNCC	2 cut(s)	181, 280
CsiI	ACCWGGT	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	2 cut(s)	154, 434
CviJI	RGCY	7 cut(s)	35, 43, 66, 182, 233, 320, 404
CviKI_1	RGCY	7 cut(s)	35, 43, 66, 182, 233, 320, 404
CviQI	GTAC	1 cut(s)	431
DpnI	GATC	2 cut(s)	366, 455
DpnII	GATC	2 cut(s)	364, 453
Eco130I	CCWWGG	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	242
EcoT22I	ATGCAT	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	2 cut(s)	157, 437
FatI	CATG	2 cut(s)	153, 433
FbaI	TGATCA	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	2 cut(s)	234, 321
FokI	GGATG	2 cut(s)	275, 365
Fsp4HI	GCNGC	2 cut(s)	234, 321
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	2 cut(s)	234, 321
GsaI	CCCAGC	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	157, 437
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HphI	GGTGA	2 cut(s)	122, 319
Hpy166II	GTNNAC	2 cut(s)	147, 348
Hpy188I	TCNGA	2 cut(s)	26, 467
Hpy188III	TCNNGA	3 cut(s)	220, 274, 451
Hpy8I	GTNNAC	2 cut(s)	147, 348
HpyAV	CCTTC	3 cut(s)	271, 323, 415
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	3 cut(s)	157, 236, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	2 cut(s)	157, 437
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	2 cut(s)	364, 453
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	9 cut(s)	4, 31, 52, 122, 205, 243, 297, 306, 379
Lsp1109I	GCAGC	2 cut(s)	220, 307
LweI	GCATC	1 cut(s)	103
MabI	ACCWGGT	1 cut(s)	17
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	2 cut(s)	225, 494
MalI	GATC	2 cut(s)	366, 455
MboI	GATC	2 cut(s)	364, 453
MboII	GAAGA	2 cut(s)	82, 324
MluCI	AATT	4 cut(s)	127, 298, 438, 504
MnlI	CCTC	1 cut(s)	77
Mph1103I	ATGCAT	1 cut(s)	159
MspA1I	CMGCKG	2 cut(s)	66, 233
MspR9I	CCNGG	1 cut(s)	19
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	2 cut(s)	364, 453
NlaIII	CATG	2 cut(s)	157, 437
NlaIV	GGNNCC	3 cut(s)	23, 183, 282
NsiI	ATGCAT	1 cut(s)	159
NspI	RCATGY	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	444
PctI	GAATGC	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	235, 322
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	3 cut(s)	23, 183, 282
PspPI	GGNCC	2 cut(s)	181, 280
PspPPI	RGGWCCY	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	238
PvuII	CAGCTG	2 cut(s)	66, 233
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
SatI	GCNGC	2 cut(s)	234, 321
Sau3AI	GATC	2 cut(s)	364, 453
Sau96I	GGNCC	2 cut(s)	181, 280
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	7 cut(s)	20, 45, 68, 88, 235, 432, 496
SexAI	ACCWGGT	1 cut(s)	17
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	444
SinI	GGWCC	1 cut(s)	280
Sse9I	AATT	4 cut(s)	127, 298, 438, 504
SspI	AATATT	1 cut(s)	50
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	242
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	2 cut(s)	45, 444
TasI	AATT	4 cut(s)	127, 298, 438, 504
TseI	GCWGC	2 cut(s)	233, 320
TspDTI	ATGAA	3 cut(s)	351, 402, 426
TspGWI	ACGGA	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	2 cut(s)	127, 438
XceI	RCATGY	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	347
XspI	CTAG	1 cut(s)	186
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.