Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008010

Physical Location & Seq

Genomic Coordinates Reverse (-)

19056766 .. 19059613

Gene Structure 2848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTTTCCCTCTCCACCTGGTTCCGGTACATAGCCCACAAGCTTGAGTACTCTGCCACGCTCAGCTGGAAGAGCTATCAAAGAGGTCAAATCACGGACAAGGAGCTAGGTGATGCCGTTTGGAAAAATCTATTTCAGGGAAGGCTGACGTACTTGCATTGGAATAAGGGAGAGGAGATGGCCCCTAGTATAGGCGCGCAAAGTGGAACTCTTCTTGTCCGGAAGATACCAGCTGCAGATCCAAAGCGTGTTTTTGTTGGGGATGTAGTTGTCTTGAAGGACCCTGAGAAACCCGATAATTACCTGGTGAGAAGATTGGCTGCAATTGAAGGGTATGAAATGCTGTCCACCGATGAAAAAGATGAGCCTTTTGTCCTTGATAAGGATGAATGCTGGGTGTTGGCTGATAATGAAAGTTTGAAGCCCAAGGAAGCCAATGACAGTCGAAAGTTTGGGCCAGTTTTCATGACAGACATAGTTGGCAGAGTCATATATTGTTTACGAACAGCTGTGGATCATGGCCCCGTGCAGAACAGCCGTTCTAGCATGCGAAAGGATACACCAGTTCTGCAAGTTGAATTGGATGTCGATGAGATGGCAAAAAACCACAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

206

Amino Acids

23.36

Weight (kDa)

6.12

Isoelectric Point (pI)

33.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06200 AT1G06200 AT2G31140
fragaria_vesca	FvH4_2g21360 FvH4_2g21360 FvH4_2g21360
malus_domestica	MD05G1196300.v1.1 MD10G1183600.v1.1
prunus_persica	Prupe.8G222700_v2.0.a1 Prupe.8G222700_v2.0.a1
pyrus_communis	pycom05g18330 pycom10g15860
rosa_chinensis	RchiOBHm_Chr6g0287951
rosa_laevigata	RLG00000012453
rosa_multiflora	Rmu_sc0000042.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180640 Rroxscaffold_7G00180900
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302900 Rh6BG309100 Rh6CG300600 Rh6CG316800 Rh6DG301600
rosa_wichuraiana	Rw6G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	197
AccIII	TCCGGA	1 cut(s)	219
AclWI	GGATC	2 cut(s)	233, 522
AfaI	GTAC	3 cut(s)	29, 50, 152
AfiI	CCNNNNNNNGG	3 cut(s)	24, 191, 382
AgsI	TTSAA	4 cut(s)	277, 329, 421, 578
AjnI	CCWGG	2 cut(s)	17, 303
AluBI	AGCT	6 cut(s)	43, 66, 75, 106, 233, 509
AluI	AGCT	6 cut(s)	43, 66, 75, 106, 233, 509
AlwI	GGATC	2 cut(s)	233, 522
Aor13HI	TCCGGA	1 cut(s)	219
AoxI	GGCC	3 cut(s)	180, 455, 520
ApeKI	GCWGC	2 cut(s)	233, 320
AspLEI	GCGC	2 cut(s)	197, 199
AspS9I	GGNCC	4 cut(s)	181, 280, 455, 521
AsuHPI	GGTGA	2 cut(s)	122, 319
AvaII	GGWCC	1 cut(s)	280
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BbvI	GCAGC	2 cut(s)	220, 307
BccI	CCATC	2 cut(s)	172, 589
BceAI	ACGGC	2 cut(s)	101, 522
BciT130I	CCWGG	2 cut(s)	19, 305
BciVI	GTATCC	1 cut(s)	550
BfaI	CTAG	3 cut(s)	107, 186, 543
BfmI	CTRYAG	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	550
BisI	GCNGC	2 cut(s)	234, 321
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	2 cut(s)	235, 322
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	19, 305
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	4 cut(s)	181, 280, 455, 521
BmiI	GGNNCC	4 cut(s)	23, 183, 282, 523
BmrFI	CCNGG	2 cut(s)	19, 305
BmsI	GCATC	1 cut(s)	103
Bpu1102I	GCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	426
BsaWI	WCCGGW	2 cut(s)	24, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 191, 382
Bse1I	ACTGG	2 cut(s)	458, 563
BseAI	TCCGGA	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	19, 305
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	3 cut(s)	268, 391, 589
BseLI	CCNNNNNNNGG	3 cut(s)	24, 191, 382
BseMII	CTCAG	2 cut(s)	76, 276
BseNI	ACTGG	2 cut(s)	458, 563
BsePI	GCGCGC	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	220, 307
BseYI	CCCAGC	1 cut(s)	393
BsgI	GTGCAG	1 cut(s)	548
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	3 cut(s)	182, 457, 522
BsiSI	CCGG	2 cut(s)	25, 220
BslI	CCNNNNNNNGG	3 cut(s)	24, 191, 382
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	3 cut(s)	182, 457, 522
Bsp13I	TCCGGA	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	238, 514
Bsp1720I	GCTNAGC	1 cut(s)	62
BspANI	GGCC	3 cut(s)	182, 457, 522
BspCNI	CTCAG	2 cut(s)	75, 277
BspEI	TCCGGA	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	197
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	4 cut(s)	23, 183, 282, 523
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	2 cut(s)	233, 522
BspQI	GCTCTTC	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	458, 563
BssECI	CCNNGG	1 cut(s)	426
BssHII	GCGCGC	1 cut(s)	195
BssMI	GATC	2 cut(s)	238, 514
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	19, 305
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	2 cut(s)	65, 216
BstC8I	GCNNGC	2 cut(s)	197, 548
BstDEI	CTNAG	2 cut(s)	62, 285
BstENI	CCTNNNNNAGG	2 cut(s)	189, 380
BstF5I	GGATG	3 cut(s)	268, 391, 589
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	2 cut(s)	197, 199
BstKTI	GATC	2 cut(s)	241, 517
BstMBI	GATC	2 cut(s)	238, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 543
BstNI	CCWGG	2 cut(s)	19, 305
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	2 cut(s)	17, 303
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	220, 307
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuI	GTATCC	1 cut(s)	550
BsuRI	GGCC	3 cut(s)	182, 457, 522
BtsCI	GGATG	3 cut(s)	268, 391, 589
Cac8I	GCNNGC	2 cut(s)	197, 548
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	2 cut(s)	197, 199
Cfr13I	GGNCC	4 cut(s)	181, 280, 455, 521
CsiI	ACCWGGT	2 cut(s)	17, 303
Csp6I	GTAC	3 cut(s)	28, 49, 151
CviAII	CATG	3 cut(s)	466, 518, 547
CviQI	GTAC	3 cut(s)	28, 49, 151
DdeI	CTNAG	2 cut(s)	62, 285
DpnI	GATC	2 cut(s)	240, 516
DpnII	GATC	2 cut(s)	238, 514
Eam1104I	CTCTTC	2 cut(s)	65, 216
EarI	CTCTTC	2 cut(s)	65, 216
Eco130I	CCWWGG	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	280
EcoNI	CCTNNNNNAGG	2 cut(s)	189, 380
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	2 cut(s)	17, 303
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	3 cut(s)	469, 521, 550
FaiI	YATR	9 cut(s)	32, 191, 336, 467, 476, 491, 493, 519, 548
FatI	CATG	3 cut(s)	465, 517, 546
Fnu4HI	GCNGC	2 cut(s)	234, 321
FokI	GGATG	3 cut(s)	275, 398, 596
Fsp4HI	GCNGC	2 cut(s)	234, 321
FspBI	CTAG	3 cut(s)	107, 186, 543
GlaI	GCGC	2 cut(s)	196, 198
GluI	GCNGC	2 cut(s)	234, 321
GsaI	CCCAGC	1 cut(s)	397
HaeIII	GGCC	3 cut(s)	182, 457, 522
HapII	CCGG	2 cut(s)	25, 220
HhaI	GCGC	2 cut(s)	197, 199
Hin1II	CATG	3 cut(s)	469, 521, 550
Hin6I	GCGC	2 cut(s)	195, 197
HinP1I	GCGC	2 cut(s)	195, 197
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	486
HpaII	CCGG	2 cut(s)	25, 220
HphI	GGTGA	2 cut(s)	122, 319
Hpy166II	GTNNAC	2 cut(s)	348, 500
Hpy188III	TCNNGA	3 cut(s)	220, 274, 466
Hpy8I	GTNNAC	2 cut(s)	348, 500
HpyAV	CCTTC	3 cut(s)	135, 271, 323
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	5 cut(s)	157, 236, 323, 529, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 543
HpyF3I	CTNAG	2 cut(s)	62, 285
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	469, 521, 550
HspAI	GCGC	2 cut(s)	195, 197
Kpn2I	TCCGGA	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	238, 514
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	2 cut(s)	220, 307
LweI	GCATC	1 cut(s)	103
MabI	ACCWGGT	2 cut(s)	17, 303
MaeI	CTAG	3 cut(s)	107, 186, 543
MaeII	ACGT	1 cut(s)	149
MalI	GATC	2 cut(s)	240, 516
MboI	GATC	2 cut(s)	238, 514
MboII	GAAGA	4 cut(s)	82, 203, 235, 324
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	3 cut(s)	298, 324, 578
MlyI	GAGTC	1 cut(s)	495
MnlI	CCTC	3 cut(s)	20, 77, 166
MroI	TCCGGA	1 cut(s)	219
MspA1I	CMGCKG	3 cut(s)	66, 233, 509
MspI	CCGG	2 cut(s)	25, 220
MspR9I	CCNGG	2 cut(s)	19, 305
MunI	CAATTG	1 cut(s)	324
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	19, 305
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	72, 543
NdeII	GATC	2 cut(s)	238, 514
NlaIII	CATG	3 cut(s)	469, 521, 550
NlaIV	GGNNCC	4 cut(s)	23, 183, 282, 523
NspI	RCATGY	1 cut(s)	550
PaeI	GCATGC	1 cut(s)	550
PagI	TCATGA	1 cut(s)	465
PauI	GCGCGC	1 cut(s)	195
PciSI	GCTCTTC	1 cut(s)	65
PctI	GAATGC	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	235, 322
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	2 cut(s)	17, 303
PspFI	CCCAGC	1 cut(s)	393
PspGI	CCWGG	2 cut(s)	17, 303
PspN4I	GGNNCC	4 cut(s)	23, 183, 282, 523
PspPI	GGNCC	4 cut(s)	181, 280, 455, 521
PspPPI	RGGWCCY	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	238
PteI	GCGCGC	1 cut(s)	195
PvuII	CAGCTG	3 cut(s)	66, 233, 509
RsaI	GTAC	3 cut(s)	29, 50, 152
RsaNI	GTAC	3 cut(s)	28, 49, 151
SapI	GCTCTTC	1 cut(s)	65
SatI	GCNGC	2 cut(s)	234, 321
Sau3AI	GATC	2 cut(s)	238, 514
Sau96I	GGNCC	4 cut(s)	181, 280, 455, 521
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	2 cut(s)	19, 305
SexAI	ACCWGGT	2 cut(s)	17, 303
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	3 cut(s)	298, 324, 578
SspMI	CTAG	3 cut(s)	107, 186, 543
StyD4I	CCNGG	2 cut(s)	17, 303
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	2 cut(s)	445, 588
TasI	AATT	3 cut(s)	298, 324, 578
TatI	WGTACW	1 cut(s)	48
TseI	GCWGC	2 cut(s)	233, 320
TspDTI	ATGAA	5 cut(s)	351, 369, 402, 426, 454
TspGWI	ACGGA	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	2 cut(s)	189, 380
XceI	RCATGY	1 cut(s)	550
XspI	CTAG	3 cut(s)	107, 186, 543
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.