Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008010

Physical Location & Seq

Genomic Coordinates Reverse (-)

49580654 .. 49584454

Gene Structure 3801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G026190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTTTCCCTATCCACCTGGTTCCGATACATAGCCCACAAGCTCGAATATTCTGCCACTATCAGCTGGAAGAACTATAAAAGAGGTCAAATCACAGACAGAGAACTTGGTGATGCTGTTTGGAAAAATTTGTTTCAGGGAAAGTTGACATACATGCATTGGAATAAAGGAGCAGAGATGGCCCCTAGTATAGGGGAACAAGGGGGAACTCTCCTTGTCAGGAAGTTACCAGCTGCAGACCCAAGGCGTGTTTTTGTTGGGGATGTAGTGGTCTTGAAGGACCCTGATAACCCAGATAATTATTTGGTGAGAAGATTGGCTGCCATAGAAGGGTATGAAATGTTGTCTACGGATGAGAAAGATGATCCTTTTGTCCTTGAAAAAGATGAATGCTGGGTTTTGGCTGATAATGAAACTTTGAAGGCAAAGGAAGCCAATGATAGTCGAAAGTTTGGTCCTGTTTCCATGACGGACATAGTTGGTAGAGTCATATATTGCCTACGAACAGCTGTTGATCATGGCCCTGTTCAGAATAGTCATTTTAGCATGAGAAAGGATTCGCCTGTCCTGGAAGTTGAATTGGATGTCGATGAGATGGCAAAAAACCACAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

205

Amino Acids

23.35

Weight (kDa)

5.77

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06200 AT1G06200 AT2G31140
fragaria_vesca	FvH4_2g21360 FvH4_2g21360 FvH4_2g21360
malus_domestica	MD05G1196300.v1.1 MD10G1183600.v1.1
prunus_persica	Prupe.8G222700_v2.0.a1 Prupe.8G222700_v2.0.a1
pyrus_communis	pycom05g18330 pycom10g15860
rosa_chinensis	RchiOBHm_Chr6g0287951
rosa_laevigata	RLG00000012453
rosa_multiflora	Rmu_sc0000042.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180640 Rroxscaffold_7G00180900
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302900 Rh6BG309100 Rh6CG300600 Rh6CG316800 Rh6DG301600
rosa_wichuraiana	Rw6G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	127
AfiI	CCNNNNNNNGG	2 cut(s)	191, 330
AgsI	TTSAA	4 cut(s)	277, 380, 421, 578
AjnI	CCWGG	2 cut(s)	17, 567
AluBI	AGCT	4 cut(s)	43, 66, 233, 509
AluI	AGCT	4 cut(s)	43, 66, 233, 509
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	2 cut(s)	180, 520
ApeKI	GCWGC	2 cut(s)	233, 320
ApoI	RAATTY	1 cut(s)	127
ArsI	GACNNNNNNTTYG	2 cut(s)	439, 471
Asp700I	GAANNNNTTC	1 cut(s)	556
AspS9I	GGNCC	4 cut(s)	181, 280, 455, 521
AsuHPI	GGTGA	2 cut(s)	122, 319
AvaII	GGWCC	2 cut(s)	280, 455
BbvI	GCAGC	2 cut(s)	220, 307
BccI	CCATC	2 cut(s)	172, 589
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	2 cut(s)	19, 569
BclI	TGATCA	1 cut(s)	514
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	2 cut(s)	234, 321
BlsI	GCNGC	2 cut(s)	235, 322
Bme1390I	CCNGG	2 cut(s)	19, 569
Bme18I	GGWCC	2 cut(s)	280, 455
BmgT120I	GGNCC	4 cut(s)	181, 280, 455, 521
BmiI	GGNNCC	3 cut(s)	23, 183, 282
BmrFI	CCNGG	2 cut(s)	19, 569
BmsI	GCATC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 330
BseBI	CCWGG	2 cut(s)	19, 569
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	3 cut(s)	268, 358, 589
BseLI	CCNNNNNNNGG	2 cut(s)	191, 330
BseXI	GCAGC	2 cut(s)	220, 307
BseYI	CCCAGC	1 cut(s)	393
BshFI	GGCC	2 cut(s)	182, 522
BslI	CCNNNNNNNGG	2 cut(s)	191, 330
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	182, 522
Bsp143I	GATC	2 cut(s)	364, 514
BspANI	GGCC	2 cut(s)	182, 522
BspLI	GGNNCC	3 cut(s)	23, 183, 282
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	2 cut(s)	364, 514
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	2 cut(s)	19, 569
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	3 cut(s)	268, 358, 589
BstKTI	GATC	2 cut(s)	367, 517
BstMBI	GATC	2 cut(s)	364, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 431
BstNI	CCWGG	2 cut(s)	19, 569
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	17, 567
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	220, 307
BsuRI	GGCC	2 cut(s)	182, 522
BtsCI	GGATG	3 cut(s)	268, 358, 589
Cfr13I	GGNCC	4 cut(s)	181, 280, 455, 521
CsiI	ACCWGGT	1 cut(s)	17
CviAII	CATG	4 cut(s)	154, 466, 518, 547
DpnI	GATC	2 cut(s)	366, 516
DpnII	GATC	2 cut(s)	364, 514
Eco130I	CCWWGG	1 cut(s)	242
Eco47I	GGWCC	2 cut(s)	280, 455
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	2 cut(s)	17, 567
EcoT14I	CCWWGG	1 cut(s)	242
EcoT22I	ATGCAT	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	4 cut(s)	157, 469, 521, 550
FatI	CATG	4 cut(s)	153, 465, 517, 546
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	2 cut(s)	234, 321
FokI	GGATG	3 cut(s)	275, 365, 596
Fsp4HI	GCNGC	2 cut(s)	234, 321
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	2 cut(s)	234, 321
GsaI	CCCAGC	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	182, 522
Hin1II	CATG	4 cut(s)	157, 469, 521, 550
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	2 cut(s)	486, 557
HphI	GGTGA	2 cut(s)	122, 319
Hpy166II	GTNNAC	2 cut(s)	147, 348
Hpy188I	TCNGA	2 cut(s)	26, 531
Hpy188III	TCNNGA	2 cut(s)	220, 274
Hpy8I	GTNNAC	2 cut(s)	147, 348
HpyAV	CCTTC	3 cut(s)	271, 323, 415
HpyCH4V	TGCA	2 cut(s)	157, 236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 431
Hsp92II	CATG	4 cut(s)	157, 469, 521, 550
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	2 cut(s)	364, 514
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	2 cut(s)	220, 307
LweI	GCATC	1 cut(s)	103
MabI	ACCWGGT	1 cut(s)	17
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	2 cut(s)	366, 516
MboI	GATC	2 cut(s)	364, 514
MboII	GAAGA	2 cut(s)	82, 324
MluCI	AATT	3 cut(s)	127, 298, 578
MlyI	GAGTC	1 cut(s)	495
MnlI	CCTC	1 cut(s)	77
Mph1103I	ATGCAT	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	556
MspA1I	CMGCKG	3 cut(s)	66, 233, 509
MspR9I	CCNGG	2 cut(s)	19, 569
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	19, 569
MwoI	GCNNNNNNNGC	2 cut(s)	179, 431
NdeII	GATC	2 cut(s)	364, 514
NlaIII	CATG	4 cut(s)	157, 469, 521, 550
NlaIV	GGNNCC	3 cut(s)	23, 183, 282
NsiI	ATGCAT	1 cut(s)	159
NspI	RCATGY	1 cut(s)	157
PctI	GAATGC	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	557
PfoI	TCCNGGA	1 cut(s)	567
PkrI	GCNGC	2 cut(s)	235, 322
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	2 cut(s)	17, 567
PspFI	CCCAGC	1 cut(s)	393
PspGI	CCWGG	2 cut(s)	17, 567
PspN4I	GGNNCC	3 cut(s)	23, 183, 282
PspPI	GGNCC	4 cut(s)	181, 280, 455, 521
PspPPI	RGGWCCY	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	238
PvuII	CAGCTG	3 cut(s)	66, 233, 509
SatI	GCNGC	2 cut(s)	234, 321
Sau3AI	GATC	2 cut(s)	364, 514
Sau96I	GGNCC	4 cut(s)	181, 280, 455, 521
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	2 cut(s)	19, 569
SetI	ASST	6 cut(s)	20, 45, 68, 88, 235, 511
SexAI	ACCWGGT	1 cut(s)	17
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	280, 455
Sse9I	AATT	3 cut(s)	127, 298, 578
SspI	AATATT	1 cut(s)	50
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	17, 567
StyI	CCWWGG	1 cut(s)	242
TaqI	TCGA	3 cut(s)	45, 445, 588
TasI	AATT	3 cut(s)	127, 298, 578
TfiI	GAWTC	1 cut(s)	557
TseI	GCWGC	2 cut(s)	233, 320
TspDTI	ATGAA	3 cut(s)	351, 402, 426
TspGWI	ACGGA	2 cut(s)	365, 485
VpaK11BI	GGWCC	2 cut(s)	280, 455
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	556
XspI	CTAG	1 cut(s)	186
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.