AT1G06390
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006440
Physical Location & Seq
Forward (+)
1946746 .. 1950860
4115 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06390.2

Sequence Viewer

Length: 1224 bp
ATGGCCTCATTACCATTGGGGCCTCAGCCTCATGCTCTTGCTCCGCCGCTGCAGCTTCACGACGGCGACGCTTTGAAACGCCGTCCTGAATTGGATTCTGATAAGGAAATGTCTGCAGCTGTTATTGAGGGAAATGACGCTGTTACTGGTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAAGATCGACGCTATAAAAACCGTGAGTTGCAACTAATGCGACCAATGGATCACCCAAATGTCATCTCCTTGAAGCACTGTTTCTTCTCTACAACGAGTAGAGATGAGCTCTTCCTCAACCTTGTTATGGAGTATGTACCTGAGACTTTATACCGGGTTTTGAGGCACTATACTAGTTCTAATCAGAGGATGCCAATTTTCTATGTCAAGCTTTACACATATCAAATCTTTAGAGGTTTGGCTTACATCCATACTGTTCCCGGTGTTTGCCACAGAGATGTGAAACCACAAAATCTCTTGGTTGATCCCTTGACCCATCAGGTTAAGCTGTGTGATTTTGGAAGTGCAAAAGTATTGGTCAAAGGTGAACCAAACATATCATATATCTGCTCCCGTTATTATCGTGCTCCAGAACTGATCTTTGGCGCCACAGAGTATACAGCATCCATAGATATATGGTCTGCTGGTTGTGTACTGGCAGAGCTTCTTCTGGGCCAGCCGTTATTTCCAGGAGAAAATTCAGTTGATCAGCTTGTGGAGATCATAAAGGTTCTTGGTACTCCAACTCGTGAAGAAATTCGATGTATGAACCCGAACTACACAGATTTTAGGTTCCCACAAATCAAAGCTCACCCTTGGCACAAGGTTTTTCATAAACGGATGCCTCCAGAAGCAATAGACCTTGCATCTCGGCTTCTTCAATATTCACCAAGTCTACGCTGCACTGCGCTCGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCCCGTCTTCCAAATGGTCGTCCATTACCGCCATTGTTCAATTTCAAACAAGAGTTAGGTGGAGCTTCAATGGAGCTAATCAACAGGCTAATACCTGAGCATGTGAGACGACAAATGAGCACAGGATTACAAAACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0032879 GO:0032880 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902911 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko01521 ko04012 ko04062 ko04075 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04075 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226
Pfam Domains
Protein Families
Pkinase

Protein Analysis

407

Amino Acids

46.02

Weight (kDa)

8.63

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 71 - 354 3.6e-61 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 73 - 274 1.6e-23 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 731
AccBSI CCGCTC 1 cut(s) 220
AccI GTMKAC 2 cut(s) 743, 1021
AciI CCGC 4 cut(s) 44, 47, 220, 1112
AclWI GGATC 2 cut(s) 363, 605
AcsI RAATTY 2 cut(s) 823, 882
AcyI GRCGYC 1 cut(s) 732
AfaI GTAC 3 cut(s) 444, 780, 865
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 7 cut(s) 76, 379, 1007, 1063, 1123, 1129, 1152
AhlI ACTAGT 1 cut(s) 479
AjnI CCWGG 1 cut(s) 814
AjuI GAANNNNNNNTTGG 2 cut(s) 711, 743
Alw21I GWGCWC 4 cut(s) 417, 715, 1051, 1205
Alw26I GTCTC 2 cut(s) 443, 1183
AlwI GGATC 2 cut(s) 363, 605
AoxI GGCC 3 cut(s) 3, 20, 799
ApeKI GCWGC 4 cut(s) 49, 52, 116, 1026
ApoI RAATTY 2 cut(s) 823, 882
Asp700I GAANNNNTTC 2 cut(s) 235, 882
AspLEI GCGC 2 cut(s) 734, 1036
AspS9I GGNCC 2 cut(s) 20, 799
AsuC2I CCSGG 2 cut(s) 461, 567
AsuHPI GGTGA 4 cut(s) 350, 683, 929, 1005
BanI GGYRCC 1 cut(s) 731
BanII GRGCYC 1 cut(s) 417
BauI CACGAG 1 cut(s) 873
BbsI GAAGAC 1 cut(s) 1082
Bbv12I GWGCWC 4 cut(s) 417, 715, 1051, 1205
BbvCI CCTCAGC 1 cut(s) 24
BbvI GCAGC 4 cut(s) 36, 64, 128, 1013
BccI CCATC 1 cut(s) 630
BceAI ACGGC 4 cut(s) 66, 79, 199, 790
BcgI CGANNNNNNTGC 4 cut(s) 1018, 1028, 1052, 1062
BciT130I CCWGG 1 cut(s) 816
BclI TGATCA 1 cut(s) 832
BcnI CCSGG 2 cut(s) 461, 567
BcoDI GTCTC 2 cut(s) 443, 1183
BcuI ACTAGT 1 cut(s) 479
BfaI CTAG 1 cut(s) 480
BfmI CTRYAG 2 cut(s) 50, 114
BfoI RGCGCY 1 cut(s) 735
BisI GCNGC 5 cut(s) 47, 50, 53, 117, 1027
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 5 cut(s) 48, 51, 54, 118, 1028
Bme1390I CCNGG 3 cut(s) 461, 567, 816
BmgT120I GGNCC 2 cut(s) 20, 799
BmiI GGNNCC 3 cut(s) 21, 733, 920
BmrFI CCNGG 3 cut(s) 461, 567, 816
BmsI GCATC 4 cut(s) 486, 758, 957, 1001
BpiI GAAGAC 1 cut(s) 1082
BplI GAGNNNNNCTC 2 cut(s) 399, 431
BpmI CTGGAG 3 cut(s) 297, 699, 957
Bpu10I CCTNAGC 2 cut(s) 24, 1179
Bpu1102I GCTNAGC 1 cut(s) 216
BpuMI CCSGG 2 cut(s) 461, 567
BsaHI GRCGYC 1 cut(s) 732
BsaJI CCNNGG 1 cut(s) 941
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse1I ACTGG 3 cut(s) 151, 280, 786
BseBI CCWGG 1 cut(s) 816
BseDI CCNNGG 1 cut(s) 941
BseGI GGATG 5 cut(s) 501, 552, 749, 972, 1051
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMII CTCAG 4 cut(s) 38, 207, 438, 1170
BseNI ACTGG 3 cut(s) 151, 280, 786
BseXI GCAGC 4 cut(s) 36, 64, 128, 1013
BsgI GTGCAG 1 cut(s) 1012
BshFI GGCC 3 cut(s) 5, 22, 801
BshNI GGYRCC 1 cut(s) 731
BsiHKAI GWGCWC 4 cut(s) 417, 715, 1051, 1205
BsiSI CCGG 2 cut(s) 460, 567
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 2 cut(s) 443, 1183
BsmBI CGTCTC 1 cut(s) 1183
BsnI GGCC 3 cut(s) 5, 22, 801
Bsp1286I GDGCHC 4 cut(s) 417, 715, 1051, 1205
Bsp143I GATC 6 cut(s) 310, 355, 610, 723, 832, 846
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 4 cut(s) 44, 47, 220, 1112
BspANI GGCC 3 cut(s) 5, 22, 801
BspCNI CTCAG 4 cut(s) 37, 208, 439, 1171
BspLI GGNNCC 3 cut(s) 21, 733, 920
BspMAI CTGCAG 2 cut(s) 54, 118
BspPI GGATC 2 cut(s) 363, 605
BspQI GCTCTTC 1 cut(s) 422
BspT107I GGYRCC 1 cut(s) 731
BsrBI CCGCTC 1 cut(s) 220
BsrI ACTGG 3 cut(s) 151, 280, 786
BssECI CCNNGG 1 cut(s) 941
BssMI GATC 6 cut(s) 310, 355, 610, 723, 832, 846
BssNAI GTATAC 1 cut(s) 744
BssNI GRCGYC 1 cut(s) 732
BssSI CACGAG 1 cut(s) 873
BssT1I CCWWGG 1 cut(s) 941
Bst1107I GTATAC 1 cut(s) 744
Bst2BI CACGAG 1 cut(s) 873
Bst2UI CCWGG 1 cut(s) 816
Bst4CI ACNGT 4 cut(s) 329, 386, 562, 1220
Bst6I CTCTTC 1 cut(s) 422
BstACI GRCGYC 1 cut(s) 732
BstAPI GCANNNNNTGC 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 803
BstDEI CTNAG 4 cut(s) 24, 216, 447, 1179
BstF5I GGATG 5 cut(s) 501, 552, 749, 972, 1051
BstH2I RGCGCY 1 cut(s) 735
BstHHI GCGC 2 cut(s) 734, 1036
BstKTI GATC 6 cut(s) 313, 358, 613, 726, 835, 849
BstMAI GTCTC 2 cut(s) 443, 1183
BstMBI GATC 6 cut(s) 310, 355, 610, 723, 832, 846
BstMWI GCNNNNNNNGC 4 cut(s) 52, 183, 343, 1040
BstNI CCWGG 1 cut(s) 816
BstNSI RCATGY 2 cut(s) 1047, 1187
BstSCI CCNGG 3 cut(s) 459, 565, 814
BstSFI CTRYAG 2 cut(s) 50, 114
BstV1I GCAGC 4 cut(s) 36, 64, 128, 1013
BstV2I GAAGAC 1 cut(s) 1082
BstZ17I GTATAC 1 cut(s) 744
BsuRI GGCC 3 cut(s) 5, 22, 801
BtsCI GGATG 5 cut(s) 501, 552, 749, 972, 1051
BtsI GCAGTG 1 cut(s) 1029
BtsIMutI CAGTG 2 cut(s) 382, 1029
Cac8I GCNNGC 1 cut(s) 803
CfoI GCGC 2 cut(s) 734, 1036
Cfr13I GGNCC 2 cut(s) 20, 799
CseI GACGC 3 cut(s) 77, 146, 324
Csp6I GTAC 3 cut(s) 443, 779, 864
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 4 cut(s) 32, 211, 1044, 1184
CviQI GTAC 3 cut(s) 443, 779, 864
DdeI CTNAG 4 cut(s) 24, 216, 447, 1179
DinI GGCGCC 1 cut(s) 733
DpnI GATC 6 cut(s) 312, 357, 612, 725, 834, 848
DpnII GATC 6 cut(s) 310, 355, 610, 723, 832, 846
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
EciI GGCGGA 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 941
Eco24I GRGCYC 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 415
EcoICRI GAGCTC 1 cut(s) 415
EcoO109I RGGNCCY 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 814
EcoT14I CCWWGG 1 cut(s) 941
EcoT38I GRGCYC 1 cut(s) 417
EgeI GGCGCC 1 cut(s) 733
EheI GGCGCC 1 cut(s) 733
ErhI CCWWGG 1 cut(s) 941
Esp3I CGTCTC 1 cut(s) 1183
FaeI CATG 4 cut(s) 35, 214, 1047, 1187
FatI CATG 4 cut(s) 31, 210, 1043, 1183
FauI CCCGC 1 cut(s) 213
FbaI TGATCA 1 cut(s) 832
FblI GTMKAC 2 cut(s) 743, 1021
Fnu4HI GCNGC 5 cut(s) 47, 50, 53, 117, 1027
FokI GGATG 5 cut(s) 508, 539, 736, 979, 1038
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 5 cut(s) 47, 50, 53, 117, 1027
FspBI CTAG 1 cut(s) 480
GlaI GCGC 2 cut(s) 733, 1035
GluI GCNGC 5 cut(s) 47, 50, 53, 117, 1027
GsuI CTGGAG 3 cut(s) 297, 699, 957
HaeII RGCGCY 1 cut(s) 735
HaeIII GGCC 3 cut(s) 5, 22, 801
HapII CCGG 2 cut(s) 460, 567
HgaI GACGC 3 cut(s) 77, 146, 324
HhaI GCGC 2 cut(s) 734, 1036
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 4 cut(s) 35, 214, 1047, 1187
Hin6I GCGC 2 cut(s) 732, 1034
HinP1I GCGC 2 cut(s) 732, 1034
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 2 cut(s) 95, 281
HpaII CCGG 2 cut(s) 460, 567
HphI GGTGA 4 cut(s) 350, 683, 929, 1005
Hpy166II GTNNAC 4 cut(s) 674, 744, 779, 1022
Hpy188I TCNGA 3 cut(s) 100, 492, 1073
Hpy188III TCNNGA 6 cut(s) 59, 86, 244, 716, 875, 974
Hpy8I GTNNAC 4 cut(s) 674, 744, 779, 1022
Hpy99I CGWCG 3 cut(s) 65, 71, 318
HpyCH4III ACNGT 4 cut(s) 329, 386, 562, 1220
HpyCH4V TGCA 7 cut(s) 52, 116, 307, 337, 653, 992, 1029
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 183, 343, 1040
HpyF3I CTNAG 4 cut(s) 24, 216, 447, 1179
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 4 cut(s) 35, 214, 1047, 1187
HspAI GCGC 2 cut(s) 732, 1034
KasI GGCGCC 1 cut(s) 731
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 6 cut(s) 310, 355, 610, 723, 832, 846
LguI GCTCTTC 1 cut(s) 422
LmnI GCTCC 5 cut(s) 46, 701, 718, 1145, 1156
Lsp1109I GCAGC 4 cut(s) 36, 64, 128, 1013
LweI GCATC 4 cut(s) 486, 758, 957, 1001
MaeI CTAG 1 cut(s) 480
MaeIII GTNAC 2 cut(s) 142, 206
MalI GATC 6 cut(s) 312, 357, 612, 725, 834, 848
MbiI CCGCTC 1 cut(s) 220
MboI GATC 6 cut(s) 310, 355, 610, 723, 832, 846
MboII GAAGA 6 cut(s) 382, 409, 785, 890, 995, 1082
MhlI GDGCHC 4 cut(s) 417, 715, 1051, 1205
MluCI AATT 5 cut(s) 89, 501, 823, 882, 1123
Mly113I GGCGCC 1 cut(s) 732
MmeI TCCRAC 2 cut(s) 208, 893
MroXI GAANNNNTTC 2 cut(s) 235, 882
MseI TTAA 3 cut(s) 294, 630, 1222
MslI CAYNNNNRTG 2 cut(s) 363, 582
MspA1I CMGCKG 2 cut(s) 49, 119
MspI CCGG 2 cut(s) 460, 567
MspR9I CCNGG 3 cut(s) 461, 567, 816
MvaI CCWGG 1 cut(s) 816
MwoI GCNNNNNNNGC 4 cut(s) 52, 183, 343, 1040
NarI GGCGCC 1 cut(s) 732
NciI CCSGG 2 cut(s) 461, 567
NdeII GATC 6 cut(s) 310, 355, 610, 723, 832, 846
NlaIII CATG 4 cut(s) 35, 214, 1047, 1187
NlaIV GGNNCC 3 cut(s) 21, 733, 920
NmeAIII GCCGAG 1 cut(s) 976
NspI RCATGY 2 cut(s) 1047, 1187
PciSI GCTCTTC 1 cut(s) 422
PdmI GAANNNNTTC 2 cut(s) 235, 882
PfeI GAWTC 2 cut(s) 95, 281
PfoI TCCNGGA 1 cut(s) 814
PkrI GCNGC 5 cut(s) 48, 51, 54, 118, 1028
PluTI GGCGCC 1 cut(s) 735
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 814
PspGI CCWGG 1 cut(s) 814
PspN4I GGNNCC 3 cut(s) 21, 733, 920
PspPI GGNCC 2 cut(s) 20, 799
PsrI GAACNNNNNNTAC 2 cut(s) 887, 919
PstI CTGCAG 2 cut(s) 54, 118
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 3 cut(s) 444, 780, 865
RsaNI GTAC 3 cut(s) 443, 779, 864
RseI CAYNNNNRTG 2 cut(s) 363, 582
SacI GAGCTC 1 cut(s) 417
SapI GCTCTTC 1 cut(s) 422
SaqAI TTAA 3 cut(s) 294, 630, 1222
SatI GCNGC 5 cut(s) 47, 50, 53, 117, 1027
Sau3AI GATC 6 cut(s) 310, 355, 610, 723, 832, 846
Sau96I GGNCC 2 cut(s) 20, 799
ScrFI CCNGG 3 cut(s) 461, 567, 816
SduI GDGCHC 4 cut(s) 417, 715, 1051, 1205
SfaNI GCATC 4 cut(s) 486, 758, 957, 1001
SfcI CTRYAG 2 cut(s) 50, 114
SfoI GGCGCC 1 cut(s) 733
SmiMI CAYNNNNRTG 2 cut(s) 363, 582
SpeI ACTAGT 1 cut(s) 479
Sse9I AATT 5 cut(s) 89, 501, 823, 882, 1123
SsiI CCGC 4 cut(s) 44, 47, 220, 1112
SspDI GGCGCC 1 cut(s) 731
SspI AATATT 1 cut(s) 1010
SspMI CTAG 1 cut(s) 480
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 3 cut(s) 459, 565, 814
StyI CCWWGG 1 cut(s) 941
TaaI ACNGT 4 cut(s) 329, 386, 562, 1220
TaqI TCGA 3 cut(s) 313, 886, 1038
TasI AATT 5 cut(s) 89, 501, 823, 882, 1123
TatI WGTACW 1 cut(s) 778
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 2 cut(s) 95, 281
Tru1I TTAA 3 cut(s) 294, 630, 1222
Tru9I TTAA 3 cut(s) 294, 630, 1222
TscAI CASTG 2 cut(s) 389, 1036
TseI GCWGC 4 cut(s) 49, 52, 116, 1026
TspDTI ATGAA 4 cut(s) 228, 908, 947, 1080
TspGWI ACGGA 2 cut(s) 979, 1044
TspRI CASTG 2 cut(s) 389, 1036
XapI RAATTY 2 cut(s) 823, 882
XceI RCATGY 2 cut(s) 1047, 1187
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmiI GTMKAC 2 cut(s) 743, 1021
XmnI GAANNNNTTC 2 cut(s) 235, 882
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.