Rh2AG343400
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006440
Physical Location & Seq
Forward (+)
50423235 .. 50429549
6315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG343400.1

Sequence Viewer

Length: 669 bp
ATGAATTGGATTCTACATGTGGTTTTCCTATGTCCTCGGCAGGTTGATCCCCTCACCCATCAGGTTAAGATTTGCGACTTTGGAAGTGCAAAAGTATTGGTCAGGGGTGAAGCAAACATTTCCTACATATGTTCTCGCTACTATCGGGCTCCTGAGCTCATCTTTGGTGCAACGGAATATACAACATCCATCGATATCTGGTCAGCTGGTTGTGTCCTTGCTGAGCTCCTTCTAGGCCAGCCGTTGTTTCCAGGAGAGAATGCAGTGGATCAACTTGTAGAGATTATCAAGGTTCTTGGTACTCCAACCAGAGAAGAAATTCGATGCATGAATCCAAACTATACTGATTTTAGGTTCCCTCAGATCAAAGCTCATCCTTGGCATAAGGTTTTCCATAAACGAATGCCACCAGAAGCAATTGACCTTGCTTCACGGCTCCTTCAATATTCACCAAGTCTACGCTGCACTGCGCTTGAAGCATGCACACATTCTTTTTTTGACGAACTTCGTGAGCCTAATGCACGCCTTCCAAATGGCCGCCCTTTGCCGCCTCTTTTCAACTTCAAACAAGAATTAAATGGAGCATCACCTGAACTGATCAGCAGGCTCATACCAGAGCATATGCGGCAGCAGGTTGGTCTCGGATTCCCACACCCAGCAGGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0032879 GO:0032880 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902911 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko01521 ko04012 ko04062 ko04075 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04075 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226
Pfam Domains
Protein Families
Pkinase

Protein Analysis

222

Amino Acids

25.19

Weight (kDa)

7.07

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 19 - 166 4.5e-28 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 31, 622, 650
AccI GTMKAC 1 cut(s) 457
AciI CCGC 3 cut(s) 538, 548, 625
AclWI GGATC 2 cut(s) 41, 276
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 1 cut(s) 318
AfaI GTAC 2 cut(s) 301, 664
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 4 cut(s) 443, 476, 559, 565
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 4 cut(s) 157, 206, 226, 371
AluI AGCT 4 cut(s) 157, 206, 226, 371
Alw21I GWGCWC 2 cut(s) 159, 228
Alw26I GTCTC 1 cut(s) 644
AlwI GGATC 2 cut(s) 41, 276
AoxI GGCC 2 cut(s) 235, 535
ApeKI GCWGC 2 cut(s) 462, 628
ApoI RAATTY 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 318
AspLEI GCGC 1 cut(s) 472
AsuHPI GGTGA 4 cut(s) 46, 119, 441, 579
BanII GRGCYC 3 cut(s) 151, 159, 228
Bbv12I GWGCWC 2 cut(s) 159, 228
BbvI GCAGC 2 cut(s) 449, 640
BccI CCATC 2 cut(s) 66, 197
BceAI ACGGC 2 cut(s) 226, 449
BciT130I CCWGG 1 cut(s) 252
BclI TGATCA 1 cut(s) 597
BcoDI GTCTC 1 cut(s) 644
BfaI CTAG 1 cut(s) 233
BfuAI ACCTGC 3 cut(s) 31, 622, 650
BisI GCNGC 5 cut(s) 463, 538, 548, 626, 629
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 5 cut(s) 464, 539, 549, 627, 630
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 3 cut(s) 150, 356, 437
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 2 cut(s) 314, 593
Bpu10I CCTNAGC 1 cut(s) 153
Bpu1102I GCTNAGC 1 cut(s) 222
Bsa29I ATCGAT 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 2 cut(s) 35, 377
BseBI CCWGG 1 cut(s) 252
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 35, 377
BseGI GGATG 2 cut(s) 185, 373
BseMII CTCAG 3 cut(s) 144, 213, 374
BseXI GCAGC 2 cut(s) 449, 640
BseYI CCCAGC 1 cut(s) 655
BsgI GTGCAG 1 cut(s) 448
BshFI GGCC 2 cut(s) 237, 537
BshVI ATCGAT 1 cut(s) 192
BsiHKAI GWGCWC 2 cut(s) 159, 228
BsmAI GTCTC 1 cut(s) 644
BsmI GAATGC 2 cut(s) 265, 408
BsnI GGCC 2 cut(s) 237, 537
Bso31I GGTCTC 1 cut(s) 644
Bsp1286I GDGCHC 3 cut(s) 151, 159, 228
Bsp143I GATC 4 cut(s) 46, 268, 363, 597
Bsp1720I GCTNAGC 1 cut(s) 222
BspACI CCGC 3 cut(s) 538, 548, 625
BspANI GGCC 2 cut(s) 237, 537
BspCNI CTCAG 3 cut(s) 145, 214, 373
BspDI ATCGAT 1 cut(s) 192
BspLI GGNNCC 3 cut(s) 150, 356, 437
BspMI ACCTGC 3 cut(s) 31, 622, 650
BspPI GGATC 2 cut(s) 41, 276
BspTNI GGTCTC 1 cut(s) 644
BssECI CCNNGG 2 cut(s) 35, 377
BssMI GATC 4 cut(s) 46, 268, 363, 597
BssT1I CCWWGG 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 252
BstC8I GCNNGC 4 cut(s) 239, 481, 523, 605
BstDEI CTNAG 3 cut(s) 153, 222, 360
BstF5I GGATG 2 cut(s) 185, 373
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 4 cut(s) 49, 271, 366, 600
BstMAI GTCTC 1 cut(s) 644
BstMBI GATC 4 cut(s) 46, 268, 363, 597
BstMWI GCNNNNNNNGC 2 cut(s) 476, 625
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 2 cut(s) 20, 483
BstSCI CCNGG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 449, 640
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 2 cut(s) 237, 537
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 2 cut(s) 185, 373
BtsI GCAGTG 2 cut(s) 270, 465
BtsIMutI CAGTG 2 cut(s) 270, 465
BveI ACCTGC 3 cut(s) 31, 622, 650
Cac8I GCNNGC 4 cut(s) 239, 481, 523, 605
CfoI GCGC 1 cut(s) 472
ClaI ATCGAT 1 cut(s) 192
Csp6I GTAC 2 cut(s) 300, 663
CviAII CATG 3 cut(s) 17, 328, 480
CviQI GTAC 2 cut(s) 300, 663
DdeI CTNAG 3 cut(s) 153, 222, 360
DpnI GATC 4 cut(s) 48, 270, 365, 599
DpnII GATC 4 cut(s) 46, 268, 363, 597
EaeI YGGCCR 1 cut(s) 535
Ecl136II GAGCTC 2 cut(s) 157, 226
Eco130I CCWWGG 1 cut(s) 377
Eco24I GRGCYC 3 cut(s) 151, 159, 228
Eco31I GGTCTC 1 cut(s) 644
Eco32I GATATC 1 cut(s) 196
Eco53kI GAGCTC 2 cut(s) 157, 226
EcoICRI GAGCTC 2 cut(s) 157, 226
EcoRII CCWGG 1 cut(s) 250
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 377
EcoT22I ATGCAT 1 cut(s) 329
EcoT38I GRGCYC 3 cut(s) 151, 159, 228
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 3 cut(s) 20, 331, 483
FatI CATG 3 cut(s) 16, 327, 479
FauNDI CATATG 2 cut(s) 128, 621
FbaI TGATCA 1 cut(s) 597
FblI GTMKAC 1 cut(s) 457
Fnu4HI GCNGC 5 cut(s) 463, 538, 548, 626, 629
FokI GGATG 2 cut(s) 172, 360
FriOI GRGCYC 3 cut(s) 151, 159, 228
Fsp4HI GCNGC 5 cut(s) 463, 538, 548, 626, 629
FspBI CTAG 1 cut(s) 233
GlaI GCGC 1 cut(s) 471
GluI GCNGC 5 cut(s) 463, 538, 548, 626, 629
GsaI CCCAGC 1 cut(s) 659
HaeIII GGCC 2 cut(s) 237, 537
HhaI GCGC 1 cut(s) 472
Hin1II CATG 3 cut(s) 20, 331, 483
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HinfI GANTC 3 cut(s) 10, 331, 645
HphI GGTGA 4 cut(s) 46, 119, 441, 579
Hpy166II GTNNAC 1 cut(s) 458
Hpy188I TCNGA 2 cut(s) 363, 644
Hpy188III TCNNGA 2 cut(s) 152, 509
Hpy8I GTNNAC 1 cut(s) 458
HpyAV CCTTC 3 cut(s) 239, 449, 536
HpyCH4V TGCA 7 cut(s) 89, 170, 263, 327, 465, 483, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 625
HpyF3I CTNAG 3 cut(s) 153, 222, 360
Hsp92II CATG 3 cut(s) 20, 331, 483
HspAI GCGC 1 cut(s) 470
Ksp22I TGATCA 1 cut(s) 597
Kzo9I GATC 4 cut(s) 46, 268, 363, 597
LmnI GCTCC 4 cut(s) 154, 231, 441, 581
Lsp1109I GCAGC 2 cut(s) 449, 640
LweI GCATC 2 cut(s) 314, 593
MaeI CTAG 1 cut(s) 233
MalI GATC 4 cut(s) 48, 270, 365, 599
MboI GATC 4 cut(s) 46, 268, 363, 597
MboII GAAGA 1 cut(s) 326
MfeI CAATTG 1 cut(s) 417
MhlI GDGCHC 3 cut(s) 151, 159, 228
MluCI AATT 4 cut(s) 4, 318, 417, 572
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 4 cut(s) 45, 62, 369, 561
Mph1103I ATGCAT 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 3 cut(s) 66, 575, 667
MspA1I CMGCKG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 417
Mva1269I GAATGC 2 cut(s) 265, 408
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 476, 625
NdeI CATATG 2 cut(s) 128, 621
NdeII GATC 4 cut(s) 46, 268, 363, 597
NlaIII CATG 3 cut(s) 20, 331, 483
NlaIV GGNNCC 3 cut(s) 150, 356, 437
NmeAIII GCCGAG 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 329
NspI RCATGY 2 cut(s) 20, 483
PaeI GCATGC 1 cut(s) 483
PciI ACATGT 1 cut(s) 16
PctI GAATGC 2 cut(s) 265, 408
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 3 cut(s) 10, 331, 645
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 5 cut(s) 464, 539, 549, 627, 630
PscI ACATGT 1 cut(s) 16
Psp124BI GAGCTC 2 cut(s) 159, 228
Psp6I CCWGG 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 655
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 3 cut(s) 150, 356, 437
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 2 cut(s) 301, 664
RsaNI GTAC 2 cut(s) 300, 663
SacI GAGCTC 2 cut(s) 159, 228
SaqAI TTAA 3 cut(s) 66, 575, 667
SatI GCNGC 5 cut(s) 463, 538, 548, 626, 629
Sau3AI GATC 4 cut(s) 46, 268, 363, 597
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 3 cut(s) 151, 159, 228
SfaNI GCATC 2 cut(s) 314, 593
SphI GCATGC 1 cut(s) 483
Sse9I AATT 4 cut(s) 4, 318, 417, 572
SsiI CCGC 3 cut(s) 538, 548, 625
SspI AATATT 1 cut(s) 446
SspMI CTAG 1 cut(s) 233
SstI GAGCTC 2 cut(s) 159, 228
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 1 cut(s) 377
TaqI TCGA 2 cut(s) 192, 322
TasI AATT 4 cut(s) 4, 318, 417, 572
TauI GCSGC 3 cut(s) 540, 550, 628
TfiI GAWTC 3 cut(s) 10, 331, 645
Tru1I TTAA 3 cut(s) 66, 575, 667
Tru9I TTAA 3 cut(s) 66, 575, 667
TscAI CASTG 2 cut(s) 270, 472
TseI GCWGC 2 cut(s) 462, 628
TspDTI ATGAA 2 cut(s) 17, 344
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 2 cut(s) 270, 472
XapI RAATTY 1 cut(s) 318
XceI RCATGY 2 cut(s) 20, 483
XmiI GTMKAC 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 1 cut(s) 233
Zsp2I ATGCAT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.