Rroxscaffold_2G00113970
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006440
Physical Location & Seq
Reverse (-)
39783001 .. 39789042
6042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113970.1

Sequence Viewer

Length: 1125 bp
ATGTCGGCTCCTGTTATTGAGGGAAATGATGCAGTCACTGGTCACATCATTTCCACGACCATTGGTGGGAAAAATGGCGAACCCAAACGGACAATTAGTTATATGGCAGAGCGTGCTGTAGGTACTGGATCATTTGGAATCGTATTTCAGGCAAAATGCTTAGAAACCGGAGAAACGGTGGCCATAAAGAAGGTGTTGCAGGACAGGAGATATAAAAATCGAGAGTTGCAGCTGATGCGTTTGATGGATCACCCAAATGTTGTTTCCCTGAAGCATTGTTTCTTCTCTACAACGACTAAAGATGAGCTTTTCCTGAATTTGGTTATGGAATATGTACCCGAGACTATGTACAGGGTTCTGAAGCACTACAGTAATATGAACCACAGGATGCCACTTATCTATGTGAAACTTTATACATATCAAATCTTTAGGGGCCTTGCTTATATCCATGCTGTTCCTGGGGTTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTTGATCCCCTCACCCATCAGGTTAAGATTTGCGACTTTGGAAGTGCAAAAGTATTGGTCAGGGGTGAAGCAAACATTTCCTACATATGTTCTCGCTACTATCGGGCTCCTGAGCTCATCTTTGGTGCAACGGAATATACAACATCCATCGATATCTGGTCAGCTGGTTGTGTCCTTGCTGAGCTCCTTCTAGGCCAGCCGTTGTTTCCAGGAGAGAATGCAGTGGATCAACTTGTAGAGATTATCAAGGTTCTTGGTACTCCAACCAGAGAAGAAATTCGATGCATGAATCCAAACTATACCGATTTCAGGTTCCCTCAGATCAAAGCTCATCCTTGGCATAAGGTTTTCCATAAACGAATGCCACCAGAAGCAATTGACCTTGCTTCACGGCTCCTTCAATATTCACCAAGTCTACGCTGCACTGCGCTTGAAGCATGCACACATCCTTTTTTTGACGAACTTCGTGAGCCTAATGCACGCCTTCCAAATGGCCGCCCTTTGCCGCCTCTTTTCAACTTCAAACAAGAATTAAATGGAGCATCACCTGAACTGATCAGCAGGCTCATACCAGAGCATATGCGGCAGCAGGTTGGTCTTGGATTCCCACACCCAGCAGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0032879 GO:0032880 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902911 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko01521 ko04012 ko04062 ko04075 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04075 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226
Pfam Domains
Protein Families
Pkinase

Protein Analysis

374

Amino Acids

42.4

Weight (kDa)

8.75

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 35 - 318 1.4e-61 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 37 - 238 6.8e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1078, 1106
AccI GTMKAC 1 cut(s) 913
AciI CCGC 3 cut(s) 994, 1004, 1081
AclWI GGATC 4 cut(s) 136, 255, 497, 732
AcoI YGGCCR 2 cut(s) 180, 991
AcsI RAATTY 2 cut(s) 316, 774
AcuI CTGAAG 2 cut(s) 290, 380
AfaI GTAC 4 cut(s) 124, 336, 350, 757
AfiI CCNNNNNNNGG 3 cut(s) 66, 319, 807
AgsI TTSAA 4 cut(s) 899, 932, 1015, 1021
AjnI CCWGG 2 cut(s) 457, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 247, 279
AluBI AGCT 6 cut(s) 232, 307, 613, 662, 682, 827
AluI AGCT 6 cut(s) 232, 307, 613, 662, 682, 827
Alw21I GWGCWC 2 cut(s) 615, 684
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 4 cut(s) 136, 255, 497, 732
AlwNI CAGNNNCTG 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 4 cut(s) 180, 433, 691, 991
ApeKI GCWGC 3 cut(s) 229, 918, 1084
ApoI RAATTY 2 cut(s) 316, 774
Asp700I GAANNNNTTC 1 cut(s) 774
AspLEI GCGC 1 cut(s) 928
AspS9I GGNCC 1 cut(s) 433
AsuHPI GGTGA 5 cut(s) 242, 502, 575, 897, 1035
AvaI CYCGRG 1 cut(s) 338
BalI TGGCCA 1 cut(s) 182
BanII GRGCYC 3 cut(s) 607, 615, 684
Bbv12I GWGCWC 2 cut(s) 615, 684
BbvI GCAGC 3 cut(s) 241, 905, 1096
BccI CCATC 3 cut(s) 238, 522, 653
BceAI ACGGC 2 cut(s) 682, 905
BciT130I CCWGG 2 cut(s) 459, 708
BclI TGATCA 1 cut(s) 1053
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 1 cut(s) 689
BfmI CTRYAG 2 cut(s) 117, 367
BfuAI ACCTGC 2 cut(s) 1078, 1106
BisI GCNGC 6 cut(s) 230, 919, 994, 1004, 1082, 1085
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 6 cut(s) 231, 920, 995, 1005, 1083, 1086
Bme1390I CCNGG 2 cut(s) 459, 708
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 5 cut(s) 9, 434, 606, 812, 893
BmrFI CCNGG 2 cut(s) 459, 708
BmsI GCATC 5 cut(s) 19, 225, 378, 770, 1049
Bpu10I CCTNAGC 1 cut(s) 609
Bpu1102I GCTNAGC 1 cut(s) 678
Bsa29I ATCGAT 1 cut(s) 648
BsaJI CCNNGG 2 cut(s) 458, 833
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 319, 807
Bse1I ACTGG 2 cut(s) 43, 130
BseBI CCWGG 2 cut(s) 459, 708
BseCI ATCGAT 1 cut(s) 648
BseDI CCNNGG 2 cut(s) 458, 833
BseGI GGATG 4 cut(s) 393, 641, 829, 943
BseLI CCNNNNNNNGG 3 cut(s) 66, 319, 807
BseMII CTCAG 3 cut(s) 600, 669, 830
BseNI ACTGG 2 cut(s) 43, 130
BseXI GCAGC 3 cut(s) 241, 905, 1096
BseYI CCCAGC 1 cut(s) 1111
BsgI GTGCAG 1 cut(s) 904
BshFI GGCC 4 cut(s) 182, 435, 693, 993
BshVI ATCGAT 1 cut(s) 648
BsiHKAI GWGCWC 2 cut(s) 615, 684
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 3 cut(s) 66, 319, 807
BsmAI GTCTC 1 cut(s) 335
BsmI GAATGC 2 cut(s) 721, 864
BsnI GGCC 4 cut(s) 182, 435, 693, 993
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 3 cut(s) 607, 615, 684
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
Bsp1720I GCTNAGC 1 cut(s) 678
BspACI CCGC 3 cut(s) 994, 1004, 1081
BspANI GGCC 4 cut(s) 182, 435, 693, 993
BspCNI CTCAG 3 cut(s) 601, 670, 829
BspDI ATCGAT 1 cut(s) 648
BspLI GGNNCC 5 cut(s) 9, 434, 606, 812, 893
BspMI ACCTGC 2 cut(s) 1078, 1106
BspPI GGATC 4 cut(s) 136, 255, 497, 732
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 2 cut(s) 43, 130
BssECI CCNNGG 2 cut(s) 458, 833
BssMI GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
BssT1I CCWWGG 1 cut(s) 833
Bst2UI CCWGG 2 cut(s) 459, 708
Bst4CI ACNGT 2 cut(s) 178, 371
BstAPI GCANNNNNTGC 2 cut(s) 113, 235
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 5 cut(s) 114, 695, 937, 979, 1061
BstDEI CTNAG 4 cut(s) 160, 609, 678, 816
BstF5I GGATG 4 cut(s) 393, 641, 829, 943
BstHHI GCGC 1 cut(s) 928
BstKTI GATC 6 cut(s) 131, 250, 505, 727, 822, 1056
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
BstMWI GCNNNNNNNGC 4 cut(s) 113, 235, 932, 1081
BstNI CCWGG 2 cut(s) 459, 708
BstNSI RCATGY 1 cut(s) 939
BstSCI CCNGG 2 cut(s) 457, 706
BstSFI CTRYAG 2 cut(s) 117, 367
BstV1I GCAGC 3 cut(s) 241, 905, 1096
Bsu15I ATCGAT 1 cut(s) 648
BsuRI GGCC 4 cut(s) 182, 435, 693, 993
BsuTUI ATCGAT 1 cut(s) 648
BtsCI GGATG 4 cut(s) 393, 641, 829, 943
BtsI GCAGTG 2 cut(s) 726, 921
BtsIMutI CAGTG 3 cut(s) 36, 726, 921
BveI ACCTGC 2 cut(s) 1078, 1106
Cac8I GCNNGC 5 cut(s) 114, 695, 937, 979, 1061
CaiI CAGNNNCTG 1 cut(s) 38
CfoI GCGC 1 cut(s) 928
Cfr13I GGNCC 1 cut(s) 433
ClaI ATCGAT 1 cut(s) 648
Csp6I GTAC 4 cut(s) 123, 335, 349, 756
CspCI CAANNNNNGTGG 2 cut(s) 43, 78
CviAII CATG 3 cut(s) 449, 784, 936
CviQI GTAC 4 cut(s) 123, 335, 349, 756
DdeI CTNAG 4 cut(s) 160, 609, 678, 816
DpnI GATC 6 cut(s) 130, 249, 504, 726, 821, 1055
DpnII GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
EaeI YGGCCR 2 cut(s) 180, 991
Ecl136II GAGCTC 2 cut(s) 613, 682
Eco130I CCWWGG 1 cut(s) 833
Eco24I GRGCYC 3 cut(s) 607, 615, 684
Eco32I GATATC 1 cut(s) 652
Eco53kI GAGCTC 2 cut(s) 613, 682
Eco57I CTGAAG 2 cut(s) 290, 380
Eco88I CYCGRG 1 cut(s) 338
EcoICRI GAGCTC 2 cut(s) 613, 682
EcoO109I RGGNCCY 1 cut(s) 433
EcoRII CCWGG 2 cut(s) 457, 706
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 833
EcoT22I ATGCAT 1 cut(s) 785
EcoT38I GRGCYC 3 cut(s) 607, 615, 684
ErhI CCWWGG 1 cut(s) 833
FaeI CATG 3 cut(s) 452, 787, 939
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FatI CATG 3 cut(s) 448, 783, 935
FauNDI CATATG 2 cut(s) 584, 1077
FbaI TGATCA 1 cut(s) 1053
FblI GTMKAC 1 cut(s) 913
Fnu4HI GCNGC 6 cut(s) 230, 919, 994, 1004, 1082, 1085
FokI GGATG 4 cut(s) 400, 628, 816, 930
FriOI GRGCYC 3 cut(s) 607, 615, 684
Fsp4HI GCNGC 6 cut(s) 230, 919, 994, 1004, 1082, 1085
FspBI CTAG 1 cut(s) 689
GlaI GCGC 1 cut(s) 927
GluI GCNGC 6 cut(s) 230, 919, 994, 1004, 1082, 1085
GsaI CCCAGC 1 cut(s) 1115
HaeIII GGCC 4 cut(s) 182, 435, 693, 993
HapII CCGG 1 cut(s) 168
HhaI GCGC 1 cut(s) 928
Hin1II CATG 3 cut(s) 452, 787, 939
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HinfI GANTC 3 cut(s) 138, 787, 1101
HpaII CCGG 1 cut(s) 168
HphI GGTGA 5 cut(s) 242, 502, 575, 897, 1035
Hpy166II GTNNAC 1 cut(s) 914
Hpy188I TCNGA 2 cut(s) 360, 819
Hpy188III TCNNGA 5 cut(s) 221, 313, 608, 965, 1122
Hpy8I GTNNAC 1 cut(s) 914
HpyAV CCTTC 4 cut(s) 184, 695, 905, 992
HpyCH4III ACNGT 2 cut(s) 178, 371
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 235, 932, 1081
HpyF3I CTNAG 4 cut(s) 160, 609, 678, 816
Hsp92II CATG 3 cut(s) 452, 787, 939
HspAI GCGC 1 cut(s) 926
Ksp22I TGATCA 1 cut(s) 1053
Kzo9I GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
LmnI GCTCC 5 cut(s) 13, 610, 687, 897, 1037
Lsp1109I GCAGC 3 cut(s) 241, 905, 1096
LweI GCATC 5 cut(s) 19, 225, 378, 770, 1049
MaeI CTAG 1 cut(s) 689
MaeIII GTNAC 2 cut(s) 34, 41
MalI GATC 6 cut(s) 130, 249, 504, 726, 821, 1055
MboI GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
MboII GAAGA 2 cut(s) 274, 782
MfeI CAATTG 1 cut(s) 873
MhlI GDGCHC 3 cut(s) 607, 615, 684
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 5 cut(s) 93, 316, 774, 873, 1028
MluNI TGGCCA 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 785
MnlI CCTC 5 cut(s) 13, 495, 518, 825, 1017
Mox20I TGGCCA 1 cut(s) 182
Mph1103I ATGCAT 1 cut(s) 785
MroXI GAANNNNTTC 1 cut(s) 774
MscI TGGCCA 1 cut(s) 182
MseI TTAA 2 cut(s) 522, 1031
MslI CAYNNNNRTG 2 cut(s) 255, 474
Msp20I TGGCCA 1 cut(s) 182
MspA1I CMGCKG 2 cut(s) 232, 662
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 459, 708
MunI CAATTG 1 cut(s) 873
Mva1269I GAATGC 2 cut(s) 721, 864
MvaI CCWGG 2 cut(s) 459, 708
MwoI GCNNNNNNNGC 4 cut(s) 113, 235, 932, 1081
NdeI CATATG 2 cut(s) 584, 1077
NdeII GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
NlaIII CATG 3 cut(s) 452, 787, 939
NlaIV GGNNCC 5 cut(s) 9, 434, 606, 812, 893
NmuCI GTSAC 2 cut(s) 34, 41
NsiI ATGCAT 1 cut(s) 785
NspI RCATGY 1 cut(s) 939
PaeI GCATGC 1 cut(s) 939
PctI GAATGC 2 cut(s) 721, 864
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 3 cut(s) 138, 787, 1101
PfoI TCCNGGA 1 cut(s) 706
PkrI GCNGC 6 cut(s) 231, 920, 995, 1005, 1083, 1086
Psp124BI GAGCTC 2 cut(s) 615, 684
Psp6I CCWGG 2 cut(s) 457, 706
PspFI CCCAGC 1 cut(s) 1111
PspGI CCWGG 2 cut(s) 457, 706
PspN4I GGNNCC 5 cut(s) 9, 434, 606, 812, 893
PspPI GGNCC 1 cut(s) 433
PstNI CAGNNNCTG 1 cut(s) 38
PvuII CAGCTG 2 cut(s) 232, 662
RsaI GTAC 4 cut(s) 124, 336, 350, 757
RsaNI GTAC 4 cut(s) 123, 335, 349, 756
RseI CAYNNNNRTG 2 cut(s) 255, 474
SacI GAGCTC 2 cut(s) 615, 684
SaqAI TTAA 2 cut(s) 522, 1031
SatI GCNGC 6 cut(s) 230, 919, 994, 1004, 1082, 1085
Sau3AI GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
Sau96I GGNCC 1 cut(s) 433
ScrFI CCNGG 2 cut(s) 459, 708
SduI GDGCHC 3 cut(s) 607, 615, 684
SfaNI GCATC 5 cut(s) 19, 225, 378, 770, 1049
SfcI CTRYAG 2 cut(s) 117, 367
SmiMI CAYNNNNRTG 2 cut(s) 255, 474
SphI GCATGC 1 cut(s) 939
Sse9I AATT 5 cut(s) 93, 316, 774, 873, 1028
SsiI CCGC 3 cut(s) 994, 1004, 1081
SspI AATATT 1 cut(s) 902
SspMI CTAG 1 cut(s) 689
SstI GAGCTC 2 cut(s) 615, 684
StyD4I CCNGG 2 cut(s) 457, 706
StyI CCWWGG 1 cut(s) 833
TaaI ACNGT 2 cut(s) 178, 371
TaqI TCGA 3 cut(s) 220, 648, 778
TasI AATT 5 cut(s) 93, 316, 774, 873, 1028
TatI WGTACW 1 cut(s) 348
TauI GCSGC 3 cut(s) 996, 1006, 1084
TfiI GAWTC 3 cut(s) 138, 787, 1101
Tru1I TTAA 2 cut(s) 522, 1031
Tru9I TTAA 2 cut(s) 522, 1031
TscAI CASTG 3 cut(s) 43, 726, 928
TseFI GTSAC 2 cut(s) 34, 41
TseI GCWGC 3 cut(s) 229, 918, 1084
Tsp45I GTSAC 2 cut(s) 34, 41
TspDTI ATGAA 2 cut(s) 392, 800
TspGWI ACGGA 2 cut(s) 103, 644
TspRI CASTG 3 cut(s) 43, 726, 928
XapI RAATTY 2 cut(s) 316, 774
XceI RCATGY 1 cut(s) 939
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 913
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 1 cut(s) 689
Zsp2I ATGCAT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.