FvH4_6g27640
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
21302445 .. 21308738
6294 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27640.t2

Sequence Viewer

Length: 1125 bp
ATGTCGGCTCCTGTTATTGAGGGAAATGATGCAGTCACTGGTCACATCATTTCCACAACCATTGGTGGGAAAAATGGTGAACCCAAACGGACGATAAGTTATATGGCAGAGCGTGCTGTAGGTACTGGATCATTTGGAATTGTATTTCAGGCTAAGTGCTTGGAAACTGGAGAAACGGTGGCCATAAAGAAGGTGTTGCAGGACAGGAGGTATAAAAATCGAGAGTTGCAGCTGATGCGTTTAATGGATCACCCAAATGTTGTTTCCCTAAAGCATTGTTTCTTCTCTACAACGACTAAAGATGAGCTTTTCCTGAATTTGGTCATGGAATATGTACCCGAGACTATGTACAGAGTACTGAAGCACTATAGTTCTATGAACCAGAGGATGCCACTCATCTATGTGAAACTTTATACATATCAAATTTTTAGGGGCCTTGCTTACATCCACGCTGTTCCTGGGGTATGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTTGATCCCCTCACCCACCAGGTTAAGATTTGTGATTTTGGAAGTGCAAAAGTATTGGTCAAGGGTGAAGCAAACATTTCCTACATATGTTCTCGCTACTATCGAGCTCCTGAGCTCATCTTTGGTGCAACGGAGTATACAACATCCATTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAGCTCCTTCTAGGCCAGCCGTTGTTTCCAGGAGAGAATGCAGTGGATCAACTTGTAGAGATTATCAAGGTTCTTGGTACTCCAACCAGAGAAGAAATTAGATGCATGAATCCAAACTATACCGATTTTAGGTTCCCTCAGATCAAAGCTCATCCTTGGCATAAGGTTTTCCACAAACGAATGCCTCCAGAAGCAATTGACCTTGCTTCACGGCTCCTTCAGTATTCACCAAGTCTACGCTGCACGGCGCTTGAAGCATGCACACATCCGTTTTTTGACGAACTTCGTGAGCCTAATGCACGTCTTCCAAATGGCCGCCCTTTGCCGCCTCTTTTCAACTTCAAACAAGAATTAAATGGAGCATCACCTGAACTGATCAGCAGGCTCATACCAGAGCATATGCGACAGCAGATTGGTCTTGGATTCCCTCACCCAGCAGGTACTTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

375

Amino Acids

42.36

Weight (kDa)

8.75

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 41 - 324 9e-62 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 43 - 244 3.8e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1106
AccI GTMKAC 2 cut(s) 635, 913
AciI CCGC 2 cut(s) 994, 1004
AclWI GGATC 4 cut(s) 136, 255, 497, 732
AcoI YGGCCR 2 cut(s) 180, 991
AcsI RAATTY 2 cut(s) 316, 423
AcuI CTGAAG 2 cut(s) 380, 881
AfaI GTAC 6 cut(s) 124, 336, 350, 357, 757, 1120
AfiI CCNNNNNNNGG 3 cut(s) 66, 319, 807
AgsI TTSAA 3 cut(s) 932, 1015, 1021
AjiI CACGTC 1 cut(s) 980
AjnI CCWGG 3 cut(s) 457, 516, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 247, 279
AluBI AGCT 7 cut(s) 232, 307, 605, 613, 662, 682, 827
AluI AGCT 7 cut(s) 232, 307, 605, 613, 662, 682, 827
Alw21I GWGCWC 3 cut(s) 607, 615, 684
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 4 cut(s) 136, 255, 497, 732
AlwNI CAGNNNCTG 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 4 cut(s) 180, 433, 691, 991
ApeKI GCWGC 2 cut(s) 229, 918
ApoI RAATTY 2 cut(s) 316, 423
AspLEI GCGC 1 cut(s) 928
AspS9I GGNCC 1 cut(s) 433
AsuHPI GGTGA 7 cut(s) 89, 242, 502, 575, 897, 1035, 1100
AvaI CYCGRG 1 cut(s) 338
BalI TGGCCA 1 cut(s) 182
BanII GRGCYC 3 cut(s) 607, 615, 684
BbsI GAAGAC 1 cut(s) 974
Bbv12I GWGCWC 3 cut(s) 607, 615, 684
BbvI GCAGC 2 cut(s) 241, 905
BceAI ACGGC 3 cut(s) 682, 905, 939
BciT130I CCWGG 3 cut(s) 459, 518, 708
BclI TGATCA 1 cut(s) 1053
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 1 cut(s) 689
BfmI CTRYAG 2 cut(s) 117, 367
BfoI RGCGCY 1 cut(s) 929
BfuAI ACCTGC 1 cut(s) 1106
BisI GCNGC 4 cut(s) 230, 919, 994, 1004
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 4 cut(s) 231, 920, 995, 1005
BmcAI AGTACT 1 cut(s) 357
Bme1390I CCNGG 3 cut(s) 459, 518, 708
BmeT110I CYCGRG 1 cut(s) 338
BmgBI CACGTC 1 cut(s) 980
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 4 cut(s) 9, 434, 812, 893
BmrFI CCNGG 3 cut(s) 459, 518, 708
BmsI GCATC 5 cut(s) 19, 225, 378, 770, 1049
BpiI GAAGAC 1 cut(s) 974
BpmI CTGGAG 2 cut(s) 189, 849
Bpu10I CCTNAGC 1 cut(s) 609
Bpu1102I GCTNAGC 1 cut(s) 678
BsaJI CCNNGG 2 cut(s) 458, 833
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 319, 807
Bse1I ACTGG 3 cut(s) 43, 130, 172
BseBI CCWGG 3 cut(s) 459, 518, 708
BseDI CCNNGG 2 cut(s) 458, 833
BseGI GGATG 5 cut(s) 393, 444, 641, 829, 943
BseLI CCNNNNNNNGG 3 cut(s) 66, 319, 807
BseMII CTCAG 3 cut(s) 600, 669, 830
BseNI ACTGG 3 cut(s) 43, 130, 172
BseXI GCAGC 2 cut(s) 241, 905
BseYI CCCAGC 1 cut(s) 1111
BsgI GTGCAG 1 cut(s) 904
BshFI GGCC 4 cut(s) 182, 435, 693, 993
BsiHKAI GWGCWC 3 cut(s) 607, 615, 684
BsiHKCI CYCGRG 1 cut(s) 338
BslI CCNNNNNNNGG 3 cut(s) 66, 319, 807
BsmAI GTCTC 1 cut(s) 335
BsmI GAATGC 2 cut(s) 721, 864
BsnI GGCC 4 cut(s) 182, 435, 693, 993
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 3 cut(s) 607, 615, 684
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
Bsp1720I GCTNAGC 1 cut(s) 678
BspACI CCGC 2 cut(s) 994, 1004
BspANI GGCC 4 cut(s) 182, 435, 693, 993
BspCNI CTCAG 3 cut(s) 601, 670, 829
BspLI GGNNCC 4 cut(s) 9, 434, 812, 893
BspMI ACCTGC 1 cut(s) 1106
BspPI GGATC 4 cut(s) 136, 255, 497, 732
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 3 cut(s) 43, 130, 172
BssECI CCNNGG 2 cut(s) 458, 833
BssMI GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
BssNAI GTATAC 1 cut(s) 636
BssT1I CCWWGG 1 cut(s) 833
Bst1107I GTATAC 1 cut(s) 636
Bst2UI CCWGG 3 cut(s) 459, 518, 708
Bst4CI ACNGT 1 cut(s) 178
BstAPI GCANNNNNTGC 2 cut(s) 113, 235
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 4 cut(s) 114, 695, 937, 1061
BstDEI CTNAG 4 cut(s) 153, 609, 678, 816
BstF5I GGATG 5 cut(s) 393, 444, 641, 829, 943
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 1 cut(s) 928
BstKTI GATC 6 cut(s) 131, 250, 505, 727, 822, 1056
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
BstMWI GCNNNNNNNGC 3 cut(s) 113, 235, 932
BstNI CCWGG 3 cut(s) 459, 518, 708
BstNSI RCATGY 1 cut(s) 939
BstSCI CCNGG 3 cut(s) 457, 516, 706
BstSFI CTRYAG 2 cut(s) 117, 367
BstV1I GCAGC 2 cut(s) 241, 905
BstV2I GAAGAC 1 cut(s) 974
BstZ17I GTATAC 1 cut(s) 636
BsuRI GGCC 4 cut(s) 182, 435, 693, 993
BtrI CACGTC 1 cut(s) 980
BtsCI GGATG 5 cut(s) 393, 444, 641, 829, 943
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 2 cut(s) 36, 726
BveI ACCTGC 1 cut(s) 1106
Cac8I GCNNGC 4 cut(s) 114, 695, 937, 1061
CaiI CAGNNNCTG 1 cut(s) 38
CfoI GCGC 1 cut(s) 928
Cfr13I GGNCC 1 cut(s) 433
CsiI ACCWGGT 1 cut(s) 516
Csp6I GTAC 6 cut(s) 123, 335, 349, 356, 756, 1119
CspCI CAANNNNNGTGG 2 cut(s) 43, 78
CviAII CATG 3 cut(s) 325, 784, 936
CviQI GTAC 6 cut(s) 123, 335, 349, 356, 756, 1119
DdeI CTNAG 4 cut(s) 153, 609, 678, 816
DpnI GATC 6 cut(s) 130, 249, 504, 726, 821, 1055
DpnII GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
EaeI YGGCCR 2 cut(s) 180, 991
Ecl136II GAGCTC 3 cut(s) 605, 613, 682
Eco130I CCWWGG 1 cut(s) 833
Eco24I GRGCYC 3 cut(s) 607, 615, 684
Eco32I GATATC 1 cut(s) 652
Eco53kI GAGCTC 3 cut(s) 605, 613, 682
Eco57I CTGAAG 2 cut(s) 380, 881
Eco88I CYCGRG 1 cut(s) 338
EcoICRI GAGCTC 3 cut(s) 605, 613, 682
EcoO109I RGGNCCY 1 cut(s) 433
EcoRII CCWGG 3 cut(s) 457, 516, 706
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 833
EcoT22I ATGCAT 1 cut(s) 785
EcoT38I GRGCYC 3 cut(s) 607, 615, 684
ErhI CCWWGG 1 cut(s) 833
FaeI CATG 3 cut(s) 328, 787, 939
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FatI CATG 3 cut(s) 324, 783, 935
FauNDI CATATG 2 cut(s) 584, 1077
FbaI TGATCA 1 cut(s) 1053
FblI GTMKAC 2 cut(s) 635, 913
Fnu4HI GCNGC 4 cut(s) 230, 919, 994, 1004
FokI GGATG 5 cut(s) 400, 431, 628, 816, 930
FriOI GRGCYC 3 cut(s) 607, 615, 684
Fsp4HI GCNGC 4 cut(s) 230, 919, 994, 1004
FspBI CTAG 1 cut(s) 689
GlaI GCGC 1 cut(s) 927
GluI GCNGC 4 cut(s) 230, 919, 994, 1004
GsaI CCCAGC 1 cut(s) 1115
GsuI CTGGAG 2 cut(s) 189, 849
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 4 cut(s) 182, 435, 693, 993
HhaI GCGC 1 cut(s) 928
Hin1II CATG 3 cut(s) 328, 787, 939
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HinfI GANTC 2 cut(s) 787, 1101
HphI GGTGA 7 cut(s) 89, 242, 502, 575, 897, 1035, 1100
Hpy166II GTNNAC 3 cut(s) 80, 636, 914
Hpy188I TCNGA 1 cut(s) 819
Hpy188III TCNNGA 5 cut(s) 221, 313, 608, 866, 965
Hpy8I GTNNAC 3 cut(s) 80, 636, 914
HpyAV CCTTC 3 cut(s) 184, 695, 905
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 979
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 235, 932
HpyF3I CTNAG 4 cut(s) 153, 609, 678, 816
HpySE526I ACGT 1 cut(s) 979
Hsp92II CATG 3 cut(s) 328, 787, 939
HspAI GCGC 1 cut(s) 926
Ksp22I TGATCA 1 cut(s) 1053
Kzo9I GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
LmnI GCTCC 5 cut(s) 13, 610, 687, 897, 1037
Lsp1109I GCAGC 2 cut(s) 241, 905
LweI GCATC 5 cut(s) 19, 225, 378, 770, 1049
MabI ACCWGGT 1 cut(s) 516
MaeI CTAG 1 cut(s) 689
MaeII ACGT 1 cut(s) 979
MaeIII GTNAC 2 cut(s) 34, 41
MalI GATC 6 cut(s) 130, 249, 504, 726, 821, 1055
MboI GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
MboII GAAGA 3 cut(s) 274, 782, 974
MfeI CAATTG 1 cut(s) 873
MhlI GDGCHC 3 cut(s) 607, 615, 684
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 6 cut(s) 138, 316, 423, 774, 873, 1028
MluNI TGGCCA 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 785
MnlI CCTC 9 cut(s) 13, 201, 378, 495, 518, 825, 873, 1017, 1116
Mox20I TGGCCA 1 cut(s) 182
Mph1103I ATGCAT 1 cut(s) 785
MscI TGGCCA 1 cut(s) 182
MseI TTAA 4 cut(s) 242, 522, 1031, 1123
MslI CAYNNNNRTG 3 cut(s) 255, 401, 474
Msp20I TGGCCA 1 cut(s) 182
MspA1I CMGCKG 2 cut(s) 232, 662
MspR9I CCNGG 3 cut(s) 459, 518, 708
MunI CAATTG 1 cut(s) 873
Mva1269I GAATGC 2 cut(s) 721, 864
MvaI CCWGG 3 cut(s) 459, 518, 708
MwoI GCNNNNNNNGC 3 cut(s) 113, 235, 932
NdeI CATATG 2 cut(s) 584, 1077
NdeII GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
NlaIII CATG 3 cut(s) 328, 787, 939
NlaIV GGNNCC 4 cut(s) 9, 434, 812, 893
NmuCI GTSAC 2 cut(s) 34, 41
NsiI ATGCAT 1 cut(s) 785
NspI RCATGY 1 cut(s) 939
PaeI GCATGC 1 cut(s) 939
PcsI WCGNNNNNNNCGW 1 cut(s) 598
PctI GAATGC 2 cut(s) 721, 864
PfeI GAWTC 2 cut(s) 787, 1101
PfoI TCCNGGA 1 cut(s) 706
PkrI GCNGC 4 cut(s) 231, 920, 995, 1005
Psp124BI GAGCTC 3 cut(s) 607, 615, 684
Psp6I CCWGG 3 cut(s) 457, 516, 706
PspFI CCCAGC 1 cut(s) 1111
PspGI CCWGG 3 cut(s) 457, 516, 706
PspN4I GGNNCC 4 cut(s) 9, 434, 812, 893
PspPI GGNCC 1 cut(s) 433
PstNI CAGNNNCTG 1 cut(s) 38
PvuII CAGCTG 2 cut(s) 232, 662
RsaI GTAC 6 cut(s) 124, 336, 350, 357, 757, 1120
RsaNI GTAC 6 cut(s) 123, 335, 349, 356, 756, 1119
RseI CAYNNNNRTG 3 cut(s) 255, 401, 474
SacI GAGCTC 3 cut(s) 607, 615, 684
SaqAI TTAA 4 cut(s) 242, 522, 1031, 1123
SatI GCNGC 4 cut(s) 230, 919, 994, 1004
Sau3AI GATC 6 cut(s) 128, 247, 502, 724, 819, 1053
Sau96I GGNCC 1 cut(s) 433
ScaI AGTACT 1 cut(s) 357
ScrFI CCNGG 3 cut(s) 459, 518, 708
SduI GDGCHC 3 cut(s) 607, 615, 684
SexAI ACCWGGT 1 cut(s) 516
SfaNI GCATC 5 cut(s) 19, 225, 378, 770, 1049
SfcI CTRYAG 2 cut(s) 117, 367
SmiMI CAYNNNNRTG 3 cut(s) 255, 401, 474
SphI GCATGC 1 cut(s) 939
Sse9I AATT 6 cut(s) 138, 316, 423, 774, 873, 1028
SsiI CCGC 2 cut(s) 994, 1004
SspMI CTAG 1 cut(s) 689
SstI GAGCTC 3 cut(s) 607, 615, 684
StyD4I CCNGG 3 cut(s) 457, 516, 706
StyI CCWWGG 1 cut(s) 833
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 982
TaqI TCGA 2 cut(s) 220, 601
TasI AATT 6 cut(s) 138, 316, 423, 774, 873, 1028
TatI WGTACW 2 cut(s) 348, 355
TauI GCSGC 2 cut(s) 996, 1006
TfiI GAWTC 2 cut(s) 787, 1101
Tru1I TTAA 4 cut(s) 242, 522, 1031, 1123
Tru9I TTAA 4 cut(s) 242, 522, 1031, 1123
TscAI CASTG 2 cut(s) 43, 726
TseFI GTSAC 2 cut(s) 34, 41
TseI GCWGC 2 cut(s) 229, 918
Tsp45I GTSAC 2 cut(s) 34, 41
TspDTI ATGAA 2 cut(s) 392, 800
TspGWI ACGGA 3 cut(s) 103, 644, 936
TspRI CASTG 2 cut(s) 43, 726
XapI RAATTY 2 cut(s) 316, 423
XceI RCATGY 1 cut(s) 939
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmiI GTMKAC 2 cut(s) 635, 913
XspI CTAG 1 cut(s) 689
ZrmI AGTACT 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.