Rorug02G0291600
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006440
Physical Location & Seq
Reverse (-)
32090518 .. 32091893
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0291600.1

Sequence Viewer

Length: 450 bp
ATGGCTTACCTTAGGAGAGCGGATTTGGACGGAGATGGCAGGATCAGCGGAGCTGAGGCCGTCGCTTCCTTTCAGGGCGCCAATTTGCCCAAACTAGTTCTTGCTCAGGTGCAAAAGGGAGATGGCACAACAAAATCGGTGAGAAGAAAAGCTCCGGCACGTAGGAAAAAGTTTCCAAGCACAAGAGTAAAGAGACAAAAGCAGAAAGAAGTGGAACAAGAAAGGGAAGAAGAGGAGGAAGAAGATGAGAAGGAACAAGACGGGGGAGAAGAGGACAATGAAGTAGAGGAGGAGGAAGAAGAAGAGAACAATGGAGCAAGAAACAAAGGCAAGGACCAGAAACAATCATATTGCCAATACAGGTGCAATATGATTATGAGTGCAGCGAGTGCAGTAGCAGGATTAGGCAATGTCGAGTGCAGTAGCAGAACACGAGTACAAGTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0032879 GO:0032880 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902911 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko01521 ko04012 ko04062 ko04075 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04075 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226
Pfam Domains
Protein Families
Pkinase

Protein Analysis

149

Amino Acids

16.74

Weight (kDa)

5.2

Isoelectric Point (pI)

74.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 2 cut(s) 20, 48
AclWI GGATC 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 438
AhlI ACTAGT 1 cut(s) 94
AluBI AGCT 2 cut(s) 53, 152
AluI AGCT 2 cut(s) 53, 152
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 1 cut(s) 50
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 383
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 1 cut(s) 334
AxyI CCTNAGG 1 cut(s) 11
BanI GGYRCC 1 cut(s) 77
BauI CACGAG 1 cut(s) 432
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 395
BccI CCATC 2 cut(s) 29, 116
BceAI ACGGC 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 187
BcuI ACTAGT 1 cut(s) 94
BfaI CTAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 81
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 79
Bpu10I CCTNAGC 2 cut(s) 54, 105
BsaAI YACGTR 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 78
Bse21I CCTNAGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 415
BseMI GCAATG 1 cut(s) 415
BseMII CTCAG 2 cut(s) 45, 119
BseRI GAGGAG 3 cut(s) 248, 302, 305
BseXI GCAGC 1 cut(s) 395
BsgI GTGCAG 3 cut(s) 402, 411, 439
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 187
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 2 cut(s) 20, 48
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 2 cut(s) 46, 118
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 415
BssMI GATC 1 cut(s) 42
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 432
Bst6I CTCTTC 3 cut(s) 225, 264, 297
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 389
BstBAI YACGTR 1 cut(s) 161
BstDEI CTNAG 3 cut(s) 11, 54, 105
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 45, 389
BstV1I GCAGC 1 cut(s) 395
Bsu36I CCTNAGG 1 cut(s) 11
BsuRI GGCC 1 cut(s) 59
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 437
CviJI RGCY 4 cut(s) 5, 53, 59, 152
CviKI_1 RGCY 4 cut(s) 5, 53, 59, 152
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 3 cut(s) 11, 54, 105
DinI GGCGCC 1 cut(s) 79
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eam1104I CTCTTC 3 cut(s) 225, 264, 297
EarI CTCTTC 3 cut(s) 225, 264, 297
Eco47I GGWCC 1 cut(s) 334
Eco81I CCTNAGG 1 cut(s) 11
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
FaiI YATR 3 cut(s) 349, 371, 377
Fnu4HI GCNGC 1 cut(s) 384
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 1 cut(s) 95
GlaI GCGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 384
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 155
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 78
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HpaII CCGG 1 cut(s) 155
HphI GGTGA 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 6 cut(s) 112, 366, 383, 392, 420, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 389
HpyF3I CTNAG 3 cut(s) 11, 54, 105
HpySE526I ACGT 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 78
HspAI GCGC 1 cut(s) 78
KasI GGCGCC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 3 cut(s) 50, 157, 314
LpnPI CCDG 7 cut(s) 25, 59, 92, 168, 346, 350, 384
Lsp1109I GCAGC 1 cut(s) 395
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 160
MalI GATC 1 cut(s) 44
MbiI CCGCTC 1 cut(s) 20
MboI GATC 1 cut(s) 42
MboII GAAGA 9 cut(s) 156, 239, 242, 251, 254, 281, 308, 311, 314
MluCI AATT 1 cut(s) 82
Mly113I GGCGCC 1 cut(s) 78
MnlI CCTC 7 cut(s) 49, 226, 229, 265, 280, 283, 286
MspA1I CMGCKG 1 cut(s) 48
MspI CCGG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 45, 389
NarI GGCGCC 1 cut(s) 78
NdeII GATC 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 385
PluTI GGCGCC 1 cut(s) 81
Ppu21I YACGTR 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 334
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 334
SetI ASST 6 cut(s) 12, 55, 111, 154, 163, 365
SfoI GGCGCC 1 cut(s) 79
SinI GGWCC 1 cut(s) 334
SpeI ACTAGT 1 cut(s) 94
Sse9I AATT 1 cut(s) 82
SsiI CCGC 2 cut(s) 20, 48
SspDI GGCGCC 1 cut(s) 77
SspMI CTAG 1 cut(s) 95
TaiI ACGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 414
TasI AATT 1 cut(s) 82
TatI WGTACW 1 cut(s) 436
TseI GCWGC 1 cut(s) 383
TspDTI ATGAA 1 cut(s) 294
TspGWI ACGGA 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 334
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.