Rorug02G0291800
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006440
Physical Location & Seq
Forward (+)
32151320 .. 32151619
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0291800.1

Sequence Viewer

Length: 273 bp
ATGAATGGGGCACTCTGTTGGCAGGGGGAGCCTGTCCTTTACGGGGAGGTACTGGCATGTCAACATGCTTTGGAATTCGCTCGAAACTATGGATTTGCCCCAGCAATCTTGGAAACAGATGCCATGGAGGTGCAGCGTCAGCTCATGGTCTGCAGCTCAATCAATACTTCTGCACTAGGAAGGATTTATGAGGATGTGGGAGTCCTTCTGGATTTTCATCCTGGTATGCAGGTGTGTCATGTTGGTCGTAGTGGAAATATGGTAGCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0032879 GO:0032880 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902911 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko01521 ko04012 ko04062 ko04075 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04075 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226
Pfam Domains
Protein Families
Pkinase

Protein Analysis

90

Amino Acids

9.84

Weight (kDa)

5.07

Isoelectric Point (pI)

29.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 11 - 90 3e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 220
Acc36I ACCTGC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 43
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 2 cut(s) 142, 156
AluI AGCT 2 cut(s) 142, 156
ApeKI GCWGC 2 cut(s) 133, 153
ApoI RAATTY 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 145, 165
BciT130I CCWGG 1 cut(s) 222
BfaI CTAG 2 cut(s) 176, 271
BfmI CTRYAG 1 cut(s) 151
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 2 cut(s) 134, 154
BlsI GCNGC 2 cut(s) 135, 155
Bme1390I CCNGG 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 57
Bse8I GATNNNNATC 1 cut(s) 216
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 199, 217
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 2 cut(s) 145, 165
BseYI CCCAGC 1 cut(s) 100
BsgI GTGCAG 2 cut(s) 152, 156
BslI CCNNNNNNNGG 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 13
Bsp19I CCATGG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 30
BspMAI CTGCAG 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 220
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 199, 217
BstMWI GCNNNNNNNGC 2 cut(s) 28, 139
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 2 cut(s) 60, 68
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 1 cut(s) 151
BstSLI GKGCMC 1 cut(s) 13
BstV1I GCAGC 2 cut(s) 145, 165
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 2 cut(s) 199, 217
BveI ACCTGC 1 cut(s) 220
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 50
CviAII CATG 5 cut(s) 57, 65, 124, 145, 239
CviJI RGCY 3 cut(s) 31, 142, 156
CviKI_1 RGCY 3 cut(s) 31, 142, 156
CviQI GTAC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 5 cut(s) 60, 68, 127, 148, 242
FaiI YATR 9 cut(s) 58, 66, 90, 125, 146, 189, 227, 240, 260
FatI CATG 5 cut(s) 56, 64, 123, 144, 238
Fnu4HI GCNGC 2 cut(s) 134, 154
FokI GGATG 2 cut(s) 204, 206
Fsp4HI GCNGC 2 cut(s) 134, 154
FspBI CTAG 2 cut(s) 176, 271
GluI GCNGC 2 cut(s) 134, 154
GsaI CCCAGC 1 cut(s) 104
HgaI GACGC 1 cut(s) 125
Hin1II CATG 5 cut(s) 60, 68, 127, 148, 242
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HinfI GANTC 1 cut(s) 201
Hpy166II GTNNAC 1 cut(s) 62
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 62
HpyAV CCTTC 2 cut(s) 174, 215
HpyCH4V TGCA 4 cut(s) 133, 153, 173, 229
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 139
Hsp92II CATG 5 cut(s) 60, 68, 127, 148, 242
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 8 cut(s) 8, 38, 45, 114, 194, 207, 215, 234
Lsp1109I GCAGC 2 cut(s) 145, 165
LweI GCATC 1 cut(s) 109
MaeI CTAG 2 cut(s) 176, 271
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 74
MlyI GAGTC 1 cut(s) 210
MnlI CCTC 3 cut(s) 40, 121, 184
MslI CAYNNNNRTG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 28, 139
NcoI CCATGG 1 cut(s) 123
NlaIII CATG 5 cut(s) 60, 68, 127, 148, 242
NlaIV GGNNCC 1 cut(s) 30
NspI RCATGY 2 cut(s) 60, 68
PaqCI CACCTGC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 135, 155
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 30
PstI CTGCAG 1 cut(s) 155
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 128
SatI GCNGC 2 cut(s) 134, 154
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 13
SetI ASST 5 cut(s) 51, 132, 144, 158, 234
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 1 cut(s) 74
SspMI CTAG 2 cut(s) 176, 271
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 1 cut(s) 123
TaqI TCGA 1 cut(s) 82
TasI AATT 1 cut(s) 74
TseI GCWGC 2 cut(s) 133, 153
TspDTI ATGAA 2 cut(s) 17, 206
XapI RAATTY 1 cut(s) 74
XceI RCATGY 2 cut(s) 60, 68
XspI CTAG 2 cut(s) 176, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.