MD09G1236300.v1.1
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0006440
Physical Location & Seq
Reverse (-)
29663187 .. 29668915
5729 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1236300.v1.1.491

Sequence Viewer

Length: 1251 bp
ATGGCCTCTGTGGGTTTGGGGCCAAAGCATCAACAATCAGAGGCACAGCCACAGCGACAGCGAGACCACAATGAGCCACTGAACCACGTGACTCGCCGAGCCCCCCAAATGGACTCCGACAAGGAAATGTCGGCTCCTGTTGTCGAGGGAAATGATGCAGTCACTGGTCACATCATTTCAACAACAATAGGTGGTAAAAATGGCGAACCAAAACGGACAATCAGTTACATGGCAGAGCGTGTTGTAGGTACTGGATCATTTGGAATTGTTTTTCAGGCTAAATGCATTGAAACTGGAGAAACGGTGGCCATAAAGAAGGTCTTACAAGACAGGAGGTATAAAAATCGTGAGTTGCAGTTGATGCGCTTGATGGATCACCCAAATGTTGTTTCACTGAAGCATTGTTTCTTCTCTACAACGGCTAAAGATGAGCTTTTCTTGAATTTGGTTATGGAATATGTACCTGAGACTATGTACAGGGTTCTGAAGCACTACAGTAGTATGAACCAAAGGATGCCACTCCTCTATGTGAAACTTTATACATATCAAATTTTTAGGGGCCTGGCTTATATCCATGCTGTTCCTGGGGTATGCCATAGAGATGTGAAGCCTCAAAATCTTTTGGTTGATCCCCTCACGCACCAAGTTAAGCTTTGTGACTATGGAAGTGCAAAAGTTCTGGTCAAGGGGGAAGCAAACATATCATACATATGTTCTCGTTACTATCGGGCTCCTGAACTCATCTTTGGTGCGACAGAATATACAACATCCATTGACATCTGGTCAGCTGGTTGTGTCCTTGCTGAGCTCCTTCTAGGCCAGCCACTATTTCCTGGAGAGAATGCAGTGGACCAACTTGTAGAGATTATCAAGGTTCTTGGCACTCCAACTAGAGAAGAGATTCGATGCATGAATCCAAATTACACTGATTTTAGGTTCCCTCAGATTAAAGCTCATCCTTGGCATAAGGTTTTCCACAAGAGAATGCCTCCCGAAGCAATTGACCTTGCTTCACGACTACTTCAATATTCACCGAGTCTACGCTGCACTGCGCTAGAGGCATGCACGCATCCTTTCTTCGACGATCTCCGTGAGCCCAATGCTCGCCTACCAAATGGTCGCCCGTTGCCGCCACTTTTCAACTTCAAACAAGAATTAAATGGAGTATCACCTGAATTGATCAAGAGGCTCATACCAGAGCATGTGCGGCAGCAGGCTGGACTTGGATTCCCACAACCAGTCAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0032879 GO:0032880 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902911 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko01521 ko04012 ko04062 ko04075 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04075 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226
Pfam Domains
Protein Families
Pkinase

Protein Analysis

417

Amino Acids

47.25

Weight (kDa)

8.92

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 77 - 360 1.2e-60 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 79 - 280 1.4e-23 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1039
AciI CCGC 2 cut(s) 1130, 1207
AclWI GGATC 3 cut(s) 262, 381, 623
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 2 cut(s) 442, 549
AcuI CTGAAG 2 cut(s) 416, 506
AcvI CACGTG 1 cut(s) 88
AfaI GTAC 3 cut(s) 250, 462, 476
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 6 cut(s) 180, 290, 442, 1025, 1141, 1147
AhdI GACNNNNNGTC 1 cut(s) 781
AjnI CCWGG 3 cut(s) 561, 583, 832
AjuI GAANNNNNNNTTGG 4 cut(s) 373, 405, 729, 761
AluBI AGCT 5 cut(s) 433, 652, 788, 808, 953
AluI AGCT 5 cut(s) 433, 652, 788, 808, 953
Alw21I GWGCWC 1 cut(s) 810
Alw26I GTCTC 2 cut(s) 57, 461
AlwI GGATC 3 cut(s) 262, 381, 623
AlwNI CAGNNNCTG 1 cut(s) 164
AoxI GGCC 5 cut(s) 3, 20, 306, 559, 817
ApeKI GCWGC 2 cut(s) 1044, 1210
ApoI RAATTY 2 cut(s) 442, 549
Asp700I GAANNNNTTC 1 cut(s) 900
AspLEI GCGC 2 cut(s) 366, 1054
AspS9I GGNCC 3 cut(s) 20, 559, 850
AsuHPI GGTGA 3 cut(s) 368, 1023, 1161
AvaII GGWCC 1 cut(s) 850
BalI TGGCCA 1 cut(s) 308
BanII GRGCYC 4 cut(s) 103, 733, 810, 1098
BbrPI CACGTG 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 810
BbvI GCAGC 2 cut(s) 1031, 1222
BccI CCATC 1 cut(s) 364
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 3 cut(s) 563, 585, 834
BclI TGATCA 1 cut(s) 1179
BcoDI GTCTC 2 cut(s) 57, 461
BfaI CTAG 3 cut(s) 815, 891, 1055
BfmI CTRYAG 1 cut(s) 493
BisI GCNGC 4 cut(s) 1045, 1130, 1208, 1211
BlpI GCTNAGC 1 cut(s) 804
BlsI GCNGC 4 cut(s) 1046, 1131, 1209, 1212
Bme1390I CCNGG 3 cut(s) 563, 585, 834
Bme18I GGWCC 1 cut(s) 850
BmeRI GACNNNNNGTC 1 cut(s) 781
BmgT120I GGNCC 3 cut(s) 20, 559, 850
BmiI GGNNCC 5 cut(s) 21, 135, 560, 732, 938
BmrFI CCNGG 3 cut(s) 563, 585, 834
BmsI GCATC 6 cut(s) 37, 145, 351, 504, 896, 1078
BplI GAGNNNNNCTC 2 cut(s) 973, 1005
BpmI CTGGAG 2 cut(s) 315, 855
Bpu1102I GCTNAGC 1 cut(s) 804
BsaAI YACGTR 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 584, 959
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 4 cut(s) 169, 256, 298, 1238
BseBI CCWGG 3 cut(s) 563, 585, 834
BseDI CCNNGG 2 cut(s) 584, 959
BseGI GGATG 4 cut(s) 519, 767, 955, 1069
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 3 cut(s) 456, 795, 956
BseNI ACTGG 4 cut(s) 169, 256, 298, 1238
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 2 cut(s) 1031, 1222
BsgI GTGCAG 1 cut(s) 1030
BshFI GGCC 5 cut(s) 5, 22, 308, 561, 819
BsiHKAI GWGCWC 1 cut(s) 810
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 57, 461
BsmI GAATGC 2 cut(s) 847, 990
BsnI GGCC 5 cut(s) 5, 22, 308, 561, 819
Bso31I GGTCTC 1 cut(s) 57
Bsp1286I GDGCHC 4 cut(s) 103, 733, 810, 1098
Bsp1407I TGTACA 1 cut(s) 474
Bsp143I GATC 5 cut(s) 254, 373, 628, 1084, 1179
Bsp1720I GCTNAGC 1 cut(s) 804
BspACI CCGC 2 cut(s) 1130, 1207
BspANI GGCC 5 cut(s) 5, 22, 308, 561, 819
BspCNI CTCAG 3 cut(s) 457, 796, 955
BspLI GGNNCC 5 cut(s) 21, 135, 560, 732, 938
BspPI GGATC 3 cut(s) 262, 381, 623
BspTNI GGTCTC 1 cut(s) 57
BsrGI TGTACA 1 cut(s) 474
BsrI ACTGG 4 cut(s) 169, 256, 298, 1238
BssECI CCNNGG 2 cut(s) 584, 959
BssMI GATC 5 cut(s) 254, 373, 628, 1084, 1179
BssT1I CCWWGG 1 cut(s) 959
Bst2UI CCWGG 3 cut(s) 563, 585, 834
Bst4CI ACNGT 2 cut(s) 304, 497
Bst6I CTCTTC 1 cut(s) 891
BstAPI GCANNNNNTGC 1 cut(s) 361
BstAUI TGTACA 1 cut(s) 474
BstBAI YACGTR 1 cut(s) 88
BstC8I GCNNGC 5 cut(s) 821, 1063, 1067, 1105, 1215
BstDEI CTNAG 3 cut(s) 465, 804, 942
BstF5I GGATG 4 cut(s) 519, 767, 955, 1069
BstHHI GCGC 2 cut(s) 366, 1054
BstKTI GATC 5 cut(s) 257, 376, 631, 1087, 1182
BstMAI GTCTC 2 cut(s) 57, 461
BstMBI GATC 5 cut(s) 254, 373, 628, 1084, 1179
BstMWI GCNNNNNNNGC 3 cut(s) 361, 1058, 1207
BstNI CCWGG 3 cut(s) 563, 585, 834
BstNSI RCATGY 2 cut(s) 1065, 1205
BstSCI CCNGG 3 cut(s) 561, 583, 832
BstSFI CTRYAG 1 cut(s) 493
BstV1I GCAGC 2 cut(s) 1031, 1222
BsuRI GGCC 5 cut(s) 5, 22, 308, 561, 819
BtsCI GGATG 4 cut(s) 519, 767, 955, 1069
BtsI GCAGTG 2 cut(s) 852, 1047
BtsIMutI CAGTG 6 cut(s) 77, 162, 392, 852, 924, 1047
Cac8I GCNNGC 5 cut(s) 821, 1063, 1067, 1105, 1215
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 2 cut(s) 366, 1054
Cfr13I GGNCC 3 cut(s) 20, 559, 850
Csp6I GTAC 3 cut(s) 249, 461, 475
CviAII CATG 5 cut(s) 229, 575, 910, 1062, 1202
CviQI GTAC 3 cut(s) 249, 461, 475
DdeI CTNAG 3 cut(s) 465, 804, 942
DpnI GATC 5 cut(s) 256, 375, 630, 1086, 1181
DpnII GATC 5 cut(s) 254, 373, 628, 1084, 1179
DriI GACNNNNNGTC 1 cut(s) 781
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 891
Eam1105I GACNNNNNGTC 1 cut(s) 781
EarI CTCTTC 1 cut(s) 891
Ecl136II GAGCTC 1 cut(s) 808
Eco130I CCWWGG 1 cut(s) 959
Eco24I GRGCYC 4 cut(s) 103, 733, 810, 1098
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 850
Eco53kI GAGCTC 1 cut(s) 808
Eco57I CTGAAG 2 cut(s) 416, 506
Eco72I CACGTG 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 808
EcoO109I RGGNCCY 1 cut(s) 559
EcoRII CCWGG 3 cut(s) 561, 583, 832
EcoT14I CCWWGG 1 cut(s) 959
EcoT22I ATGCAT 2 cut(s) 287, 911
EcoT38I GRGCYC 4 cut(s) 103, 733, 810, 1098
ErhI CCWWGG 1 cut(s) 959
FaeI CATG 5 cut(s) 232, 578, 913, 1065, 1205
FalI AAGNNNNNCTT 6 cut(s) 305, 337, 417, 449, 636, 668
FatI CATG 5 cut(s) 228, 574, 909, 1061, 1201
FauNDI CATATG 1 cut(s) 710
FbaI TGATCA 1 cut(s) 1179
FblI GTMKAC 1 cut(s) 1039
Fnu4HI GCNGC 4 cut(s) 1045, 1130, 1208, 1211
FokI GGATG 4 cut(s) 526, 754, 942, 1056
FriOI GRGCYC 4 cut(s) 103, 733, 810, 1098
Fsp4HI GCNGC 4 cut(s) 1045, 1130, 1208, 1211
FspBI CTAG 3 cut(s) 815, 891, 1055
GlaI GCGC 2 cut(s) 365, 1053
GluI GCNGC 4 cut(s) 1045, 1130, 1208, 1211
GsuI CTGGAG 2 cut(s) 315, 855
HaeIII GGCC 5 cut(s) 5, 22, 308, 561, 819
HhaI GCGC 2 cut(s) 366, 1054
Hin1II CATG 5 cut(s) 232, 578, 913, 1065, 1205
Hin6I GCGC 2 cut(s) 364, 1052
HinP1I GCGC 2 cut(s) 364, 1052
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 6 cut(s) 91, 113, 901, 913, 1036, 1227
HphI GGTGA 3 cut(s) 368, 1023, 1161
Hpy166II GTNNAC 2 cut(s) 850, 1040
Hpy188I TCNGA 5 cut(s) 40, 118, 486, 945, 1244
Hpy188III TCNNGA 6 cut(s) 347, 439, 734, 992, 1014, 1183
Hpy8I GTNNAC 2 cut(s) 850, 1040
Hpy99I CGWCG 1 cut(s) 1085
HpyAV CCTTC 2 cut(s) 310, 821
HpyCH4III ACNGT 2 cut(s) 304, 497
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 8 cut(s) 158, 285, 355, 671, 845, 909, 1047, 1065
HpyF10VI GCNNNNNNNGC 3 cut(s) 361, 1058, 1207
HpyF3I CTNAG 3 cut(s) 465, 804, 942
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 5 cut(s) 232, 578, 913, 1065, 1205
HspAI GCGC 2 cut(s) 364, 1052
Ksp22I TGATCA 1 cut(s) 1179
Kzo9I GATC 5 cut(s) 254, 373, 628, 1084, 1179
LmnI GCTCC 3 cut(s) 139, 736, 813
Lsp1109I GCAGC 2 cut(s) 1031, 1222
LweI GCATC 6 cut(s) 37, 145, 351, 504, 896, 1078
MaeI CTAG 3 cut(s) 815, 891, 1055
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 6 cut(s) 88, 160, 167, 224, 656, 719
MalI GATC 5 cut(s) 256, 375, 630, 1086, 1181
MboI GATC 5 cut(s) 254, 373, 628, 1084, 1179
MboII GAAGA 3 cut(s) 400, 908, 1069
MfeI CAATTG 1 cut(s) 999
MhlI GDGCHC 4 cut(s) 103, 733, 810, 1098
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 7 cut(s) 264, 442, 549, 919, 999, 1154, 1175
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 3 cut(s) 85, 107, 1045
MmeI TCCRAC 2 cut(s) 141, 911
Mox20I TGGCCA 1 cut(s) 308
Mph1103I ATGCAT 2 cut(s) 287, 911
MroXI GAANNNNTTC 1 cut(s) 900
MscI TGGCCA 1 cut(s) 308
MseI TTAA 4 cut(s) 648, 948, 1157, 1249
MslI CAYNNNNRTG 3 cut(s) 381, 600, 709
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 788
MspR9I CCNGG 3 cut(s) 563, 585, 834
MunI CAATTG 1 cut(s) 999
Mva1269I GAATGC 2 cut(s) 847, 990
MvaI CCWGG 3 cut(s) 563, 585, 834
MwoI GCNNNNNNNGC 3 cut(s) 361, 1058, 1207
NdeI CATATG 1 cut(s) 710
NdeII GATC 5 cut(s) 254, 373, 628, 1084, 1179
NlaIII CATG 5 cut(s) 232, 578, 913, 1065, 1205
NlaIV GGNNCC 5 cut(s) 21, 135, 560, 732, 938
NmeAIII GCCGAG 1 cut(s) 122
NmuCI GTSAC 4 cut(s) 88, 160, 167, 656
NsiI ATGCAT 2 cut(s) 287, 911
NspI RCATGY 2 cut(s) 1065, 1205
PaeI GCATGC 1 cut(s) 1065
PctI GAATGC 2 cut(s) 847, 990
PdmI GAANNNNTTC 1 cut(s) 900
PfeI GAWTC 3 cut(s) 901, 913, 1227
PfoI TCCNGGA 1 cut(s) 832
PkrI GCNGC 4 cut(s) 1046, 1131, 1209, 1212
PleI GAGTC 3 cut(s) 85, 107, 1044
PmaCI CACGTG 1 cut(s) 88
PmlI CACGTG 1 cut(s) 88
PpsI GAGTC 3 cut(s) 85, 107, 1044
Ppu21I YACGTR 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 810
Psp6I CCWGG 3 cut(s) 561, 583, 832
PspCI CACGTG 1 cut(s) 88
PspGI CCWGG 3 cut(s) 561, 583, 832
PspN4I GGNNCC 5 cut(s) 21, 135, 560, 732, 938
PspPI GGNCC 3 cut(s) 20, 559, 850
PstNI CAGNNNCTG 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 788
RsaI GTAC 3 cut(s) 250, 462, 476
RsaNI GTAC 3 cut(s) 249, 461, 475
RseI CAYNNNNRTG 3 cut(s) 381, 600, 709
SacI GAGCTC 1 cut(s) 810
SaqAI TTAA 4 cut(s) 648, 948, 1157, 1249
SatI GCNGC 4 cut(s) 1045, 1130, 1208, 1211
Sau3AI GATC 5 cut(s) 254, 373, 628, 1084, 1179
Sau96I GGNCC 3 cut(s) 20, 559, 850
SchI GAGTC 3 cut(s) 85, 107, 1045
ScrFI CCNGG 3 cut(s) 563, 585, 834
SduI GDGCHC 4 cut(s) 103, 733, 810, 1098
SfaNI GCATC 6 cut(s) 37, 145, 351, 504, 896, 1078
SfcI CTRYAG 1 cut(s) 493
SinI GGWCC 1 cut(s) 850
SmiMI CAYNNNNRTG 3 cut(s) 381, 600, 709
SphI GCATGC 1 cut(s) 1065
Sse9I AATT 7 cut(s) 264, 442, 549, 919, 999, 1154, 1175
SsiI CCGC 2 cut(s) 1130, 1207
SspI AATATT 1 cut(s) 1028
SspMI CTAG 3 cut(s) 815, 891, 1055
SstI GAGCTC 1 cut(s) 810
StyD4I CCNGG 3 cut(s) 561, 583, 832
StyI CCWWGG 1 cut(s) 959
TaaI ACNGT 2 cut(s) 304, 497
TaiI ACGT 1 cut(s) 90
TaqI TCGA 3 cut(s) 144, 904, 1080
TasI AATT 7 cut(s) 264, 442, 549, 919, 999, 1154, 1175
TatI WGTACW 1 cut(s) 474
TauI GCSGC 2 cut(s) 1132, 1210
TfiI GAWTC 3 cut(s) 901, 913, 1227
Tru1I TTAA 4 cut(s) 648, 948, 1157, 1249
Tru9I TTAA 4 cut(s) 648, 948, 1157, 1249
TscAI CASTG 6 cut(s) 84, 169, 399, 852, 931, 1054
TseFI GTSAC 4 cut(s) 88, 160, 167, 656
TseI GCWGC 2 cut(s) 1044, 1210
Tsp45I GTSAC 4 cut(s) 88, 160, 167, 656
TspDTI ATGAA 2 cut(s) 518, 926
TspGWI ACGGA 2 cut(s) 229, 1079
TspRI CASTG 6 cut(s) 84, 169, 399, 852, 931, 1054
VpaK11BI GGWCC 1 cut(s) 850
XapI RAATTY 2 cut(s) 442, 549
XceI RCATGY 2 cut(s) 1065, 1205
XcmI CCANNNNNNNNNTGG 1 cut(s) 581
XmiI GTMKAC 1 cut(s) 1039
XmnI GAANNNNTTC 1 cut(s) 900
XspI CTAG 3 cut(s) 815, 891, 1055
Zsp2I ATGCAT 2 cut(s) 287, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.