Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006110

Physical Location & Seq

Genomic Coordinates Forward (+)

2277555 .. 2280502

Gene Structure 2948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCTTCCTTCGTGGAATCTGGTTGGCAGTACCTTGTGACACATTTTAGCGACTTTCAACTGGCATGTATTGGGAGTTTTCTCCTCCATGAAAGCGTGTTTTTCTTATCTGGACTCCCTTTCATTTTTCTTGAAAGGCAAGGCTTTCTCAGCAAGTACAAAATTCAGACAAAAAATAACACACCTGCAGCCCAAGGAAAATGTATTACTCGCCTGTTGCTTTATCATTTCTCCGTAAACTTGCCCCTGATGTTGGCCTCCTACCCTGTCTTCCGAGCCATGGGAATGCGAAGCAGTTTTCCTCTGCCGTCCTGGAAAGAAGTGTCTGCCCAGATATTATTCTACTTTATCATTGAGGATTTTGTCTTCTATTGGGGTCATCGGATCTTGCATTCAAAATGGCTGTACAAGAACGTGCATAGTGTGCATCATGAATATGCCACACCATTTGGTTTGACATCAGAATATGCTCACCCCGCTGAGATTCTATTTCTGGGTTTTGCTACCATAGTCGGTCCAGCTCTTACTGGCCCTCACCTAATTACTCTCTGGTTATGGATGGTGTTGAGAGTGCTGGAGACAGTTGAGGCACATTGTGGTTATCATTTCCCATGGAGCCTCTCAAATTTTCTTCCTCTGTATGGAGGTGCTGACTTCCATGACTACCATCACCGACTGCTATACACAAAGTCCGGAAACTACTCTTCAACTTTTGTGTATATGGACTGGATCTTTGGTACTGACAAGGGGTACAGAAGACTGAAGACCCTTAAAGAAAACGGTGACATGAAACAAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000254 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0030258 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0080065 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

266

Amino Acids

30.93

Weight (kDa)

8.63

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	75 - 209	2.3e-28	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07420 AT1G07420 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390
fragaria_vesca	FvH4_3g37020 FvH4_3g37020
malus_domestica	MD03G1085200.v1.1 MD11G1093000.v1.1
prunus_persica	Prupe.6G068700_v2.0.a1
pyrus_communis	pycom03g06740 pycom11g07860
rosa_chinensis	RchiOBHm_Chr5g0066411
rosa_laevigata	RLG00000035861
rosa_multiflora	Rmu_ssc0000249.1_g000020
rosa_roxburghii	Rroxscaffold_1G00014470 Rroxscaffold_1G00014630
rosa_rugosa	Rorug05G0378100 Rorug05G0378200
rosa_samantha	Rh5AG436900 Rh5BG453100 Rh5CG475500 Rh5DG468300
rosa_wichuraiana	Rw5G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	1 cut(s)	193
AccIII	TCCGGA	1 cut(s)	692
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	2 cut(s)	392, 737
AcsI	RAATTY	2 cut(s)	162, 625
AcuI	CTGAAG	1 cut(s)	782
AdeI	CACNNNGTG	1 cut(s)	596
AfaI	GTAC	5 cut(s)	32, 158, 407, 739, 752
AfiI	CCNNNNNNNGG	3 cut(s)	253, 280, 641
AgsI	TTSAA	4 cut(s)	59, 134, 396, 708
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	1 cut(s)	521
AluI	AGCT	1 cut(s)	521
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	2 cut(s)	392, 737
Aor13HI	TCCGGA	1 cut(s)	692
AoxI	GGCC	2 cut(s)	255, 529
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	162, 625
ArsI	GACNNNNNNTTYG	2 cut(s)	716, 748
AspS9I	GGNCC	2 cut(s)	515, 530
AsuHPI	GGTGA	4 cut(s)	464, 527, 662, 794
AvaII	GGWCC	1 cut(s)	515
BbsI	GAAGAC	4 cut(s)	262, 358, 763, 770
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	2 cut(s)	553, 675
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	2 cut(s)	515, 530
BmiI	GGNNCC	1 cut(s)	617
BmrFI	CCNGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	4 cut(s)	262, 358, 763, 770
BpmI	CTGGAG	1 cut(s)	596
BsaJI	CCNNGG	3 cut(s)	193, 279, 611
BsaWI	WCCGGW	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 280, 641
Bse1I	ACTGG	3 cut(s)	66, 532, 731
BseAI	TCCGGA	1 cut(s)	692
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	193, 279, 611
BseGI	GGATG	1 cut(s)	564
BseLI	CCNNNNNNNGG	3 cut(s)	253, 280, 641
BseMII	CTCAG	2 cut(s)	163, 471
BseNI	ACTGG	3 cut(s)	66, 532, 731
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	200
BshFI	GGCC	2 cut(s)	257, 531
BsiSI	CCGG	1 cut(s)	693
BslI	CCNNNNNNNGG	3 cut(s)	253, 280, 641
BsmAI	GTCTC	1 cut(s)	572
BsmI	GAATGC	2 cut(s)	291, 391
BsnI	GGCC	2 cut(s)	257, 531
Bsp13I	TCCGGA	1 cut(s)	692
Bsp1407I	TGTACA	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	384, 729
Bsp19I	CCATGG	2 cut(s)	279, 611
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	2 cut(s)	257, 531
BspCNI	CTCAG	2 cut(s)	162, 472
BspEI	TCCGGA	1 cut(s)	692
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	617
BspMAI	CTGCAG	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	2 cut(s)	392, 737
BsrGI	TGTACA	1 cut(s)	405
BsrI	ACTGG	3 cut(s)	66, 532, 731
BssECI	CCNNGG	3 cut(s)	193, 279, 611
BssMI	GATC	2 cut(s)	384, 729
BssT1I	CCWWGG	3 cut(s)	193, 279, 611
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	2 cut(s)	583, 782
Bst6I	CTCTTC	1 cut(s)	709
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstAUI	TGTACA	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	149, 480
BstDSI	CCRYGG	2 cut(s)	279, 611
BstF5I	GGATG	1 cut(s)	564
BstKTI	GATC	2 cut(s)	387, 732
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	2 cut(s)	384, 729
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 424, 476
BstNI	CCWGG	1 cut(s)	313
BstNSI	RCATGY	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	4 cut(s)	262, 358, 763, 770
BstX2I	RGATCY	2 cut(s)	384, 729
BstYI	RGATCY	2 cut(s)	384, 729
BsuRI	GGCC	2 cut(s)	257, 531
BtgI	CCRYGG	2 cut(s)	279, 611
BtsCI	GGATG	1 cut(s)	564
BveI	ACCTGC	1 cut(s)	193
CciI	TCATGA	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	515, 530
Csp6I	GTAC	5 cut(s)	31, 157, 406, 738, 751
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	7 cut(s)	66, 89, 280, 431, 612, 659, 787
CviJI	RGCY	9 cut(s)	5, 144, 191, 257, 278, 403, 521, 531, 618
CviKI_1	RGCY	9 cut(s)	5, 144, 191, 257, 278, 403, 521, 531, 618
CviQI	GTAC	5 cut(s)	31, 157, 406, 738, 751
DdeI	CTNAG	2 cut(s)	149, 480
DpnI	GATC	2 cut(s)	386, 731
DpnII	GATC	2 cut(s)	384, 729
DraIII	CACNNNGTG	1 cut(s)	596
Eam1104I	CTCTTC	1 cut(s)	709
EarI	CTCTTC	1 cut(s)	709
Eco130I	CCWWGG	3 cut(s)	193, 279, 611
Eco47I	GGWCC	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	782
EcoRII	CCWGG	1 cut(s)	311
EcoT14I	CCWWGG	3 cut(s)	193, 279, 611
ErhI	CCWWGG	3 cut(s)	193, 279, 611
FaeI	CATG	7 cut(s)	69, 92, 283, 434, 615, 662, 790
FatI	CATG	7 cut(s)	65, 88, 279, 430, 611, 658, 786
FauI	CCCGC	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	571
Fsp4HI	GCNGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	2 cut(s)	257, 531
HapII	CCGG	1 cut(s)	693
Hin1II	CATG	7 cut(s)	69, 92, 283, 434, 615, 662, 790
HinfI	GANTC	3 cut(s)	17, 114, 484
HpaII	CCGG	1 cut(s)	693
HphI	GGTGA	4 cut(s)	464, 527, 662, 794
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	4 cut(s)	168, 275, 384, 463
Hpy188III	TCNNGA	4 cut(s)	111, 131, 431, 693
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	583, 782
HpyCH4IV	ACGT	2 cut(s)	414, 797
HpyCH4V	TGCA	4 cut(s)	188, 391, 418, 427
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 424, 476
HpyF3I	CTNAG	2 cut(s)	149, 480
HpySE526I	ACGT	2 cut(s)	414, 797
Hsp92II	CATG	7 cut(s)	69, 92, 283, 434, 615, 662, 790
Kpn2I	TCCGGA	1 cut(s)	692
Kzo9I	GATC	2 cut(s)	384, 729
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	436
MaeII	ACGT	2 cut(s)	414, 797
MaeIII	GTNAC	2 cut(s)	37, 782
MalI	GATC	2 cut(s)	386, 731
MboI	GATC	2 cut(s)	384, 729
MboII	GAAGA	6 cut(s)	262, 358, 623, 696, 768, 775
MflI	RGATCY	2 cut(s)	384, 729
MluCI	AATT	3 cut(s)	162, 540, 625
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	9 cut(s)	95, 268, 312, 349, 543, 580, 629, 638, 645
MroI	TCCGGA	1 cut(s)	692
MseI	TTAA	1 cut(s)	771
MslI	CAYNNNNRTG	2 cut(s)	284, 435
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	1 cut(s)	693
MspR9I	CCNGG	1 cut(s)	313
Mva1269I	GAATGC	2 cut(s)	291, 391
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	3 cut(s)	150, 424, 476
NcoI	CCATGG	2 cut(s)	279, 611
NdeII	GATC	2 cut(s)	384, 729
NlaIII	CATG	7 cut(s)	69, 92, 283, 434, 615, 662, 790
NlaIV	GGNNCC	1 cut(s)	617
NmuCI	GTSAC	2 cut(s)	37, 782
NspI	RCATGY	1 cut(s)	69
PagI	TCATGA	1 cut(s)	430
PaqCI	CACCTGC	1 cut(s)	193
PctI	GAATGC	2 cut(s)	291, 391
PfeI	GAWTC	2 cut(s)	17, 484
PfoI	TCCNGGA	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	617
PspPI	GGNCC	2 cut(s)	515, 530
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	384, 729
RsaI	GTAC	5 cut(s)	32, 158, 407, 739, 752
RsaNI	GTAC	5 cut(s)	31, 157, 406, 738, 751
RseI	CAYNNNNRTG	2 cut(s)	284, 435
SaqAI	TTAA	1 cut(s)	771
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	384, 729
Sau96I	GGNCC	2 cut(s)	515, 530
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	313
SetI	ASST	7 cut(s)	36, 187, 417, 523, 540, 649, 800
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	515
SmiMI	CAYNNNNRTG	2 cut(s)	284, 435
Sse9I	AATT	3 cut(s)	162, 540, 625
SsiI	CCGC	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	311
StyI	CCWWGG	3 cut(s)	193, 279, 611
TaaI	ACNGT	2 cut(s)	583, 782
TaiI	ACGT	2 cut(s)	417, 800
TaqII	GACCGA	1 cut(s)	503
TasI	AATT	3 cut(s)	162, 540, 625
TatI	WGTACW	2 cut(s)	156, 405
TfiI	GAWTC	2 cut(s)	17, 484
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TseFI	GTSAC	2 cut(s)	37, 782
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	2 cut(s)	37, 782
TspDTI	ATGAA	3 cut(s)	105, 112, 447
TspGWI	ACGGA	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	2 cut(s)	162, 625
XceI	RCATGY	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.