Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006110

Physical Location & Seq

Genomic Coordinates Forward (+)

74257995 .. 74262482

Gene Structure 4488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG468300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGATTGCTTCCTATCCTGTCTTCAAGTTCATGGGGATGCGAAGTAGTCTTCCATTGCCGTCCTGGAAAGTGGTTTCAACACAGATACTTTTCTACTTCATCCTAGAGGATTTCATATTCTATTGGGGACATAGGGTTCTGCATACAAAATGGTTGTACAAGCATGTGCACAGCGTTCATCACGAATATGCTACACCTTTTGGACTGACTTCGGAATATGCTCACCCGGCTGAGATATTATTCCTTGGCTTTGCTACAATTGTCGGTCCTGCCATAACTGGGCCTCATCTGATCACTCTGTGGTTATGGATGGTACTCAGAGTGCTGGAGACAGTTGAGGCACATTGTGGTTACCATTTCCCATGGAGCCTCTCCAACTTCTTACCTTTATATGGAGGTGCTGATTTTCATGATTATCATCACCGTTTGCTTTATACCAAGTCTGGCAACTATTCATCAACTTTTGTTTACATGGACAGGATATTTGGAACTGACACCGGTTACAGAAAGTTGAAAGCACTGGAAAAAGCTGGAGTTGAAGATGATGGCGAGGGTACGTGCTATGGCAAGGGTACATGCAACGGCAAGGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000254 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0030258 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0080065 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

198

Amino Acids

22.8

Weight (kDa)

6.89

Isoelectric Point (pI)

27.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	30 - 164	4.1e-28	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07420 AT1G07420 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390
fragaria_vesca	FvH4_3g37020 FvH4_3g37020
malus_domestica	MD03G1085200.v1.1 MD11G1093000.v1.1
prunus_persica	Prupe.6G068700_v2.0.a1
pyrus_communis	pycom03g06740 pycom11g07860
rosa_chinensis	RchiOBHm_Chr5g0066411
rosa_laevigata	RLG00000035861
rosa_multiflora	Rmu_ssc0000249.1_g000020
rosa_roxburghii	Rroxscaffold_1G00014470 Rroxscaffold_1G00014630
rosa_rugosa	Rorug05G0378100 Rorug05G0378200
rosa_samantha	Rh5AG436900 Rh5BG453100 Rh5CG475500 Rh5DG468300
rosa_wichuraiana	Rw5G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	2 cut(s)	300, 347
AfaI	GTAC	4 cut(s)	158, 315, 556, 574
AfiI	CCNNNNNNNGG	2 cut(s)	279, 392
AgeI	ACCGGT	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	25, 78, 514, 539
AjnI	CCWGG	1 cut(s)	62
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
AluBI	AGCT	1 cut(s)	530
AluI	AGCT	1 cut(s)	530
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	323
Alw44I	GTGCAC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	281
ApaLI	GTGCAC	1 cut(s)	167
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
AsiGI	ACCGGT	1 cut(s)	497
AspS9I	GGNCC	2 cut(s)	266, 281
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	215, 413
AvaII	GGWCC	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	171
BbsI	GAAGAC	2 cut(s)	13, 41
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	2 cut(s)	304, 539
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	1 cut(s)	291
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	64, 227
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	266, 281
BmiI	GGNNCC	1 cut(s)	368
BmrFI	CCNGG	2 cut(s)	64, 227
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	27
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	2 cut(s)	13, 41
BpmI	CTGGAG	2 cut(s)	347, 552
BpuMI	CCSGG	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	558
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	244, 362
BsaWI	WCCGGW	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 392
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	2 cut(s)	283, 525
Bse3DI	GCAATG	1 cut(s)	53
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	244, 362
BseGI	GGATG	3 cut(s)	42, 99, 315
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	279, 392
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	222, 331
BseNI	ACTGG	2 cut(s)	283, 525
BseSI	GKGCMC	1 cut(s)	171
BshFI	GGCC	1 cut(s)	283
BshTI	ACCGGT	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	227, 498
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	279, 392
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	291
Bsp19I	CCATGG	1 cut(s)	362
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	223, 330
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	497
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	283, 525
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	2 cut(s)	244, 362
BssMI	GATC	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	244, 362
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	334, 425
BstAUI	TGTACA	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	231, 317
BstDSI	CCRYGG	1 cut(s)	362
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	3 cut(s)	42, 99, 315
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	2 cut(s)	167, 579
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	62, 225
BstSLI	GKGCMC	1 cut(s)	171
BstV2I	GAAGAC	2 cut(s)	13, 41
BsuRI	GGCC	1 cut(s)	283
BtgI	CCRYGG	1 cut(s)	362
BtsCI	GGATG	3 cut(s)	42, 99, 315
BtsIMutI	CAGTG	1 cut(s)	518
CciI	TCATGA	1 cut(s)	409
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	2 cut(s)	266, 281
Csp6I	GTAC	4 cut(s)	157, 314, 555, 573
CspAI	ACCGGT	1 cut(s)	497
CviAII	CATG	6 cut(s)	31, 164, 363, 410, 472, 576
CviJI	RGCY	5 cut(s)	230, 249, 283, 369, 530
CviKI_1	RGCY	5 cut(s)	230, 249, 283, 369, 530
CviQI	GTAC	4 cut(s)	157, 314, 555, 573
DdeI	CTNAG	2 cut(s)	231, 317
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
DraIII	CACNNNGTG	2 cut(s)	300, 347
Eco130I	CCWWGG	2 cut(s)	244, 362
Eco47I	GGWCC	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	2 cut(s)	244, 362
ErhI	CCWWGG	2 cut(s)	244, 362
FaeI	CATG	6 cut(s)	34, 167, 366, 413, 475, 579
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	6 cut(s)	30, 163, 362, 409, 471, 575
FbaI	TGATCA	1 cut(s)	291
FokI	GGATG	3 cut(s)	49, 86, 322
FspBI	CTAG	1 cut(s)	104
GsuI	CTGGAG	2 cut(s)	347, 552
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	2 cut(s)	227, 498
Hin1II	CATG	6 cut(s)	34, 167, 366, 413, 475, 579
HpaII	CCGG	2 cut(s)	227, 498
HphI	GGTGA	2 cut(s)	215, 413
Hpy166II	GTNNAC	2 cut(s)	169, 469
Hpy188I	TCNGA	3 cut(s)	214, 291, 320
Hpy188III	TCNNGA	2 cut(s)	182, 410
Hpy8I	GTNNAC	2 cut(s)	169, 469
HpyCH4III	ACNGT	2 cut(s)	334, 425
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	3 cut(s)	142, 169, 579
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	231, 317
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	6 cut(s)	34, 167, 366, 413, 475, 579
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	366
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	2 cut(s)	350, 500
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	3 cut(s)	13, 41, 551
MfeI	CAATTG	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	6 cut(s)	100, 294, 331, 380, 389, 544
MslI	CAYNNNNRTG	2 cut(s)	35, 186
MspI	CCGG	2 cut(s)	227, 498
MspR9I	CCNGG	2 cut(s)	64, 227
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	362
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	6 cut(s)	34, 167, 366, 413, 475, 579
NlaIV	GGNNCC	1 cut(s)	368
NspI	RCATGY	2 cut(s)	167, 579
PagI	TCATGA	1 cut(s)	409
PfoI	TCCNGGA	1 cut(s)	62
PinAI	ACCGGT	1 cut(s)	497
Ppu21I	YACGTR	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	2 cut(s)	266, 281
RsaI	GTAC	4 cut(s)	158, 315, 556, 574
RsaNI	GTAC	4 cut(s)	157, 314, 555, 573
RseI	CAYNNNNRTG	2 cut(s)	35, 186
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	2 cut(s)	266, 281
ScrFI	CCNGG	2 cut(s)	64, 227
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	5 cut(s)	199, 388, 400, 532, 560
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	2 cut(s)	35, 186
Sse9I	AATT	1 cut(s)	258
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	62, 225
StyI	CCWWGG	2 cut(s)	244, 362
TaaI	ACNGT	2 cut(s)	334, 425
TaiI	ACGT	1 cut(s)	560
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	1 cut(s)	258
TatI	WGTACW	1 cut(s)	156
TscAI	CASTG	1 cut(s)	525
TspDTI	ATGAA	6 cut(s)	19, 88, 103, 167, 398, 444
TspRI	CASTG	1 cut(s)	525
VneI	GTGCAC	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	266
XceI	RCATGY	2 cut(s)	167, 579
XcmI	CCANNNNNNNNNTGG	1 cut(s)	60
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.