Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006110

Physical Location & Seq

Genomic Coordinates Reverse (-)

51225224 .. 51229752

Gene Structure 4529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0378100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCATTTCAAGTTCATCATTTGAGTTTGAGGTTACCAACAACAACTAGCTGTATTTCTTCAAAAACCCAGTTCGGTTTTGCCTTGAAACCCAAGAATTTAACATTTGGTAAACCCAAGAGGCTCTTCTTCTCGGTTCGTGCAATGGGTTCCTCTGCTTCTTCTCCAGACCGCAGCACTTCTCAAGAGACTGGTGACTATAAATCTATAAGTAATGACGAATGGAAAAATCGGCTTACGAAGGAACAATTTTACATTACTCGTCAAAAGGGAACAGAGAGGGCGTTCACTGGGGAATACTGGAATACCAAAACTCCCGGAACTTACCATTGCATATGTTGTGACGCCCCTCTTTTTGAATCATCTACTAAATTTGACAGTGGAACTGGTTGGCCATCTTATTACCAGCCGATAGGAAACAACGTGAAATCCAAGTTAGACTTGTCCATTATCATCATGCCTCGCCAGGAAGTTCTTTGTGCCGTTTGTGATTCTCATCTTGGCCATGTCTTTGATGATGGTCCACCACCGACAGGAAAGCGCTACTGTATTAACAGTGCTTCCTTGAAACTAAAACCAAAGCAGGAGTCAGCCTCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000254 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0030258 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0080065 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

200

Amino Acids

22.38

Weight (kDa)

9.24

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	79 - 193	1.6e-49	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07420 AT1G07420 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390
fragaria_vesca	FvH4_3g37020 FvH4_3g37020
malus_domestica	MD03G1085200.v1.1 MD11G1093000.v1.1
prunus_persica	Prupe.6G068700_v2.0.a1
pyrus_communis	pycom03g06740 pycom11g07860
rosa_chinensis	RchiOBHm_Chr5g0066411
rosa_laevigata	RLG00000035861
rosa_multiflora	Rmu_ssc0000249.1_g000020
rosa_roxburghii	Rroxscaffold_1G00014470 Rroxscaffold_1G00014630
rosa_rugosa	Rorug05G0378100 Rorug05G0378200
rosa_samantha	Rh5AG436900 Rh5BG453100 Rh5CG475500 Rh5DG468300
rosa_wichuraiana	Rw5G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	172
AcoI	YGGCCR	2 cut(s)	392, 502
AcsI	RAATTY	2 cut(s)	97, 371
AcyI	GRCGYC	1 cut(s)	345
AfeI	AGCGCT	1 cut(s)	542
AfiI	CCNNNNNNNGG	1 cut(s)	533
AgsI	TTSAA	5 cut(s)	11, 63, 88, 359, 568
AjnI	CCWGG	1 cut(s)	465
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	182
Aor51HI	AGCGCT	1 cut(s)	542
AoxI	GGCC	2 cut(s)	392, 502
ApeKI	GCWGC	1 cut(s)	174
ApoI	RAATTY	2 cut(s)	97, 371
ArsI	GACNNNNNNTTYG	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	543
AspS9I	GGNCC	1 cut(s)	521
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	521
BalI	TGGCCA	2 cut(s)	394, 504
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	2 cut(s)	403, 512
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	467
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	544
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	318, 467
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	2 cut(s)	318, 467
BmrI	ACTGGG	2 cut(s)	64, 300
BmuI	ACTGGG	2 cut(s)	64, 300
BplI	GAGNNNNNCTC	1 cut(s)	578
BpmI	CTGGAG	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse1I	ACTGG	5 cut(s)	70, 196, 295, 305, 391
Bse3DI	GCAATG	2 cut(s)	150, 328
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	467
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMI	GCAATG	2 cut(s)	150, 328
BseNI	ACTGG	5 cut(s)	70, 196, 295, 305, 391
BseXI	GCAGC	1 cut(s)	186
BshFI	GGCC	2 cut(s)	394, 504
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	394, 504
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	2 cut(s)	394, 504
BspLI	GGNNCC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	131
BsrDI	GCAATG	2 cut(s)	150, 328
BsrI	ACTGG	5 cut(s)	70, 196, 295, 305, 391
BssNI	GRCGYC	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	3 cut(s)	380, 548, 557
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	345
BstEII	GGTNACC	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	544
BstHHI	GCGC	1 cut(s)	543
BstMAI	GTCTC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	467
BstPI	GGTNACC	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	316, 465
BstV1I	GCAGC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	394, 504
BtsIMutI	CAGTG	3 cut(s)	288, 385, 562
CfoI	GCGC	1 cut(s)	543
Cfr13I	GGNCC	1 cut(s)	521
CseI	GACGC	1 cut(s)	353
CviAII	CATG	2 cut(s)	457, 506
CviJI	RGCY	7 cut(s)	51, 124, 235, 394, 409, 504, 593
CviKI_1	RGCY	7 cut(s)	51, 124, 235, 394, 409, 504, 593
EaeI	YGGCCR	2 cut(s)	392, 502
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	521
Eco47III	AGCGCT	1 cut(s)	542
Eco91I	GGTNACC	1 cut(s)	33
EcoO65I	GGTNACC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	465
FaeI	CATG	2 cut(s)	460, 509
FaiI	YATR	6 cut(s)	201, 209, 335, 337, 458, 507
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 425, 457
FatI	CATG	2 cut(s)	456, 505
FauNDI	CATATG	1 cut(s)	335
Fnu4HI	GCNGC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	542
GluI	GCNGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	544
HaeIII	GGCC	2 cut(s)	394, 504
HapII	CCGG	1 cut(s)	318
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	1 cut(s)	543
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	2 cut(s)	460, 509
Hin6I	GCGC	1 cut(s)	541
HinP1I	GCGC	1 cut(s)	541
HinfI	GANTC	3 cut(s)	359, 491, 587
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	3 cut(s)	113, 288, 524
Hpy188III	TCNNGA	2 cut(s)	167, 185
Hpy8I	GTNNAC	3 cut(s)	113, 288, 524
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	3 cut(s)	380, 548, 557
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	2 cut(s)	143, 333
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	460, 509
HspAI	GCGC	1 cut(s)	541
LguI	GCTCTTC	1 cut(s)	131
Lsp1109I	GCAGC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	3 cut(s)	33, 194, 341
MboII	GAAGA	4 cut(s)	51, 118, 121, 153
MlsI	TGGCCA	2 cut(s)	394, 504
MluCI	AATT	4 cut(s)	97, 248, 371, 598
MluNI	TGGCCA	2 cut(s)	394, 504
MlyI	GAGTC	1 cut(s)	596
MnlI	CCTC	6 cut(s)	24, 114, 163, 273, 360, 471
Mox20I	TGGCCA	2 cut(s)	394, 504
MscI	TGGCCA	2 cut(s)	394, 504
MseI	TTAA	3 cut(s)	101, 552, 601
Msp20I	TGGCCA	2 cut(s)	394, 504
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	318, 467
MvaI	CCWGG	1 cut(s)	467
NciI	CCSGG	1 cut(s)	318
NdeI	CATATG	1 cut(s)	335
NlaIII	CATG	2 cut(s)	460, 509
NlaIV	GGNNCC	1 cut(s)	151
NmuCI	GTSAC	2 cut(s)	194, 341
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	359, 491
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	465
PspEI	GGTNACC	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	3 cut(s)	101, 552, 601
SatI	GCNGC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	2 cut(s)	318, 467
SetI	ASST	3 cut(s)	35, 53, 426
SinI	GGWCC	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	4 cut(s)	97, 248, 371, 598
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	2 cut(s)	316, 465
TaaI	ACNGT	3 cut(s)	380, 548, 557
TaiI	ACGT	1 cut(s)	426
TasI	AATT	4 cut(s)	97, 248, 371, 598
TfiI	GAWTC	2 cut(s)	359, 491
Tru1I	TTAA	3 cut(s)	101, 552, 601
Tru9I	TTAA	3 cut(s)	101, 552, 601
TscAI	CASTG	3 cut(s)	295, 385, 562
TseFI	GTSAC	2 cut(s)	194, 341
TseI	GCWGC	1 cut(s)	174
Tsp45I	GTSAC	2 cut(s)	194, 341
TspDTI	ATGAA	1 cut(s)	5
TspRI	CASTG	3 cut(s)	295, 385, 562
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	2 cut(s)	97, 371
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.