Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006110

Physical Location & Seq

Genomic Coordinates Forward (+)

72195833 .. 72200107

Gene Structure 4275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTTCCATTGTTGAATCTGGCTGGCGGTATCTCATCACAAATTTCAACGACTTTCAACTGGCATGTCTAGGAAGTTTCTTTCTCCATGAGAGTGTTTTCTTCTTGTCCGGACTTCCTTTTATATATCTTGAGAGGGCAGGATGGTTAAGCAAGTACAAGATTCAGGCAAAAAATAACAGCCCAGCAGCTCAGGAGAAATGTATCACTCGCCTGGTGCTATATCATTTTTGTGTCAATCTGCCAGTTATGATTGCTTCCTATCCTGTCTTCAAGTTCATGGGGATGCGAAGTAGTCTTCCATTGCCGTCCTGGAAAGTGGTTTCAACACAGATACTTTTCTACTTCATCCTAGAGGATTTCATATTCTATTGGGGACATAGGGTTCTGCATACAAAATGGTTGTACAAGCATGTGCACAGCGTTCATCACGAATATGCTACACCTTTTGGACTGACTTCGGAATATGCTCACCCGGCTGAGATATTATTCCTTGGCTTTGCTACAATTGTCGGTCCTGCCATAACTGGGCCTCATCTGATCACTCTGTGGTTATGGATGGTACTCAGAGTGCTGGAGACAGTTGAGGCACATTGTGGTTACCATTTCCCATGGAGCCTCTCCAACTTCTTACCTTTATATGGAGGTGCTGATTTTCATGATTATCATCACCGTTTGCTTTATACCAAGTCTGGCAACTATTCGTCAACTTTTGTTTACATGGACAGGATATTTGGAACTGACACCGGTTACAGAAAGTTGAAAGCACTGGAGAAAGCTGGAGTTGAAGATGATGGCGAGGGTACGTGCTATGGCAAGGGTACATGCAACGGCAAGGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000254 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0030258 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0080065 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

281

Amino Acids

32.35

Weight (kDa)

7.71

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	113 - 247	1.1e-27	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07420 AT1G07420 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390
fragaria_vesca	FvH4_3g37020 FvH4_3g37020
malus_domestica	MD03G1085200.v1.1 MD11G1093000.v1.1
prunus_persica	Prupe.6G068700_v2.0.a1
pyrus_communis	pycom03g06740 pycom11g07860
rosa_chinensis	RchiOBHm_Chr5g0066411
rosa_laevigata	RLG00000035861
rosa_multiflora	Rmu_ssc0000249.1_g000020
rosa_roxburghii	Rroxscaffold_1G00014470 Rroxscaffold_1G00014630
rosa_rugosa	Rorug05G0378100 Rorug05G0378200
rosa_samantha	Rh5AG436900 Rh5BG453100 Rh5CG475500 Rh5DG468300
rosa_wichuraiana	Rw5G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	110
AciI	CCGC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	43
AdeI	CACNNNGTG	2 cut(s)	549, 596
AfaI	GTAC	5 cut(s)	158, 407, 564, 805, 823
AfiI	CCNNNNNNNGG	2 cut(s)	528, 641
AgeI	ACCGGT	1 cut(s)	746
AgsI	TTSAA	7 cut(s)	17, 49, 59, 274, 327, 763, 788
AjnI	CCWGG	2 cut(s)	213, 311
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AluBI	AGCT	2 cut(s)	191, 779
AluI	AGCT	2 cut(s)	191, 779
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	572
Alw44I	GTGCAC	1 cut(s)	416
Aor13HI	TCCGGA	1 cut(s)	110
AoxI	GGCC	1 cut(s)	530
ApaLI	GTGCAC	1 cut(s)	416
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	43
ArsI	GACNNNNNNTTYG	2 cut(s)	716, 748
AsiGI	ACCGGT	1 cut(s)	746
AspS9I	GGNCC	2 cut(s)	515, 530
AsuC2I	CCSGG	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	464, 662
AvaII	GGWCC	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	420
BbsI	GAAGAC	2 cut(s)	262, 290
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	3 cut(s)	138, 553, 788
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	2 cut(s)	215, 313
BclI	TGATCA	1 cut(s)	540
BcnI	CCSGG	1 cut(s)	476
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	2 cut(s)	71, 353
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	3 cut(s)	215, 313, 476
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	2 cut(s)	515, 530
BmiI	GGNNCC	1 cut(s)	617
BmrFI	CCNGG	3 cut(s)	215, 313, 476
BmrI	ACTGGG	1 cut(s)	537
BmsI	GCATC	1 cut(s)	276
BmuI	ACTGGG	1 cut(s)	537
BpiI	GAAGAC	2 cut(s)	262, 290
BpmI	CTGGAG	3 cut(s)	596, 791, 801
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	476
BsaAI	YACGTR	1 cut(s)	807
BsaBI	GATNNNNATC	1 cut(s)	666
BsaJI	CCNNGG	2 cut(s)	493, 611
BsaWI	WCCGGW	2 cut(s)	110, 746
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 641
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	4 cut(s)	66, 245, 532, 774
Bse3DI	GCAATG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	666
BseAI	TCCGGA	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	215, 313
BseDI	CCNNGG	2 cut(s)	493, 611
BseGI	GGATG	4 cut(s)	149, 291, 348, 564
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	2 cut(s)	528, 641
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	3 cut(s)	206, 471, 580
BseNI	ACTGG	4 cut(s)	66, 245, 532, 774
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	1 cut(s)	200
BseYI	CCCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	532
BshTI	ACCGGT	1 cut(s)	746
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	3 cut(s)	111, 476, 747
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	528, 641
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp13I	TCCGGA	1 cut(s)	110
Bsp1407I	TGTACA	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	540
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	532
BspCNI	CTCAG	3 cut(s)	205, 472, 579
BspEI	TCCGGA	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	746
BsrGI	TGTACA	1 cut(s)	405
BsrI	ACTGG	4 cut(s)	66, 245, 532, 774
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	2 cut(s)	493, 611
BssMI	GATC	1 cut(s)	540
BssT1I	CCWWGG	2 cut(s)	493, 611
Bst2UI	CCWGG	2 cut(s)	215, 313
Bst4CI	ACNGT	2 cut(s)	583, 674
BstAUI	TGTACA	1 cut(s)	405
BstBAI	YACGTR	1 cut(s)	807
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	3 cut(s)	192, 480, 566
BstDSI	CCRYGG	1 cut(s)	611
BstEII	GGTNACC	1 cut(s)	599
BstF5I	GGATG	4 cut(s)	149, 291, 348, 564
BstKTI	GATC	1 cut(s)	543
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	1 cut(s)	540
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNI	CCWGG	2 cut(s)	215, 313
BstNSI	RCATGY	3 cut(s)	69, 416, 828
BstPI	GGTNACC	1 cut(s)	599
BstSCI	CCNGG	3 cut(s)	213, 311, 474
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	2 cut(s)	262, 290
BsuRI	GGCC	1 cut(s)	532
BtgI	CCRYGG	1 cut(s)	611
BtsCI	GGATG	4 cut(s)	149, 291, 348, 564
BtsIMutI	CAGTG	1 cut(s)	767
Cac8I	GCNNGC	1 cut(s)	26
CciI	TCATGA	1 cut(s)	658
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	2 cut(s)	515, 530
Csp6I	GTAC	5 cut(s)	157, 406, 563, 804, 822
CspAI	ACCGGT	1 cut(s)	746
CviAII	CATG	8 cut(s)	66, 89, 280, 413, 612, 659, 721, 825
CviJI	RGCY	9 cut(s)	5, 24, 183, 191, 479, 498, 532, 618, 779
CviKI_1	RGCY	9 cut(s)	5, 24, 183, 191, 479, 498, 532, 618, 779
CviQI	GTAC	5 cut(s)	157, 406, 563, 804, 822
DdeI	CTNAG	3 cut(s)	192, 480, 566
DpnI	GATC	1 cut(s)	542
DpnII	GATC	1 cut(s)	540
DraIII	CACNNNGTG	2 cut(s)	549, 596
Eco130I	CCWWGG	2 cut(s)	493, 611
Eco47I	GGWCC	1 cut(s)	515
Eco91I	GGTNACC	1 cut(s)	599
EcoO65I	GGTNACC	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	213, 311
EcoT14I	CCWWGG	2 cut(s)	493, 611
ErhI	CCWWGG	2 cut(s)	493, 611
FaeI	CATG	8 cut(s)	69, 92, 283, 416, 615, 662, 724, 828
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	8 cut(s)	65, 88, 279, 412, 611, 658, 720, 824
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	4 cut(s)	156, 298, 335, 571
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	71, 353
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	3 cut(s)	596, 791, 801
HaeIII	GGCC	1 cut(s)	532
HapII	CCGG	3 cut(s)	111, 476, 747
Hin1II	CATG	8 cut(s)	69, 92, 283, 416, 615, 662, 724, 828
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HinfI	GANTC	2 cut(s)	17, 163
HpaII	CCGG	3 cut(s)	111, 476, 747
HphI	GGTGA	2 cut(s)	464, 662
Hpy166II	GTNNAC	3 cut(s)	418, 708, 718
Hpy188I	TCNGA	3 cut(s)	463, 540, 569
Hpy188III	TCNNGA	5 cut(s)	111, 131, 194, 431, 659
Hpy8I	GTNNAC	3 cut(s)	418, 708, 718
HpyCH4III	ACNGT	2 cut(s)	583, 674
HpyCH4IV	ACGT	1 cut(s)	806
HpyCH4V	TGCA	3 cut(s)	391, 418, 828
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	3 cut(s)	192, 480, 566
HpySE526I	ACGT	1 cut(s)	806
Hsp92II	CATG	8 cut(s)	69, 92, 283, 416, 615, 662, 724, 828
Kpn2I	TCCGGA	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	1 cut(s)	540
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	2 cut(s)	71, 353
MaeII	ACGT	1 cut(s)	806
MaeIII	GTNAC	2 cut(s)	599, 749
MalI	GATC	1 cut(s)	542
MboI	GATC	1 cut(s)	540
MboII	GAAGA	4 cut(s)	94, 262, 290, 800
MfeI	CAATTG	1 cut(s)	507
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	2 cut(s)	43, 507
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	7 cut(s)	129, 349, 543, 580, 629, 638, 793
MroI	TCCGGA	1 cut(s)	110
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	4 cut(s)	93, 231, 284, 435
MspI	CCGG	3 cut(s)	111, 476, 747
MspR9I	CCNGG	3 cut(s)	215, 313, 476
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	2 cut(s)	215, 313
MwoI	GCNNNNNNNGC	1 cut(s)	476
NciI	CCSGG	1 cut(s)	476
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	1 cut(s)	540
NlaIII	CATG	8 cut(s)	69, 92, 283, 416, 615, 662, 724, 828
NlaIV	GGNNCC	1 cut(s)	617
NspI	RCATGY	3 cut(s)	69, 416, 828
PagI	TCATGA	1 cut(s)	658
PfeI	GAWTC	2 cut(s)	17, 163
PfoI	TCCNGGA	1 cut(s)	311
PinAI	ACCGGT	1 cut(s)	746
PkrI	GCNGC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	807
Psp6I	CCWGG	2 cut(s)	213, 311
PspEI	GGTNACC	1 cut(s)	599
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	2 cut(s)	213, 311
PspN4I	GGNNCC	1 cut(s)	617
PspPI	GGNCC	2 cut(s)	515, 530
RsaI	GTAC	5 cut(s)	158, 407, 564, 805, 823
RsaNI	GTAC	5 cut(s)	157, 406, 563, 804, 822
RseI	CAYNNNNRTG	4 cut(s)	93, 231, 284, 435
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	540
Sau96I	GGNCC	2 cut(s)	515, 530
ScrFI	CCNGG	3 cut(s)	215, 313, 476
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	6 cut(s)	193, 448, 637, 649, 781, 809
SfaNI	GCATC	1 cut(s)	276
SinI	GGWCC	1 cut(s)	515
SmiMI	CAYNNNNRTG	4 cut(s)	93, 231, 284, 435
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	43, 507
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	2 cut(s)	71, 353
StyD4I	CCNGG	3 cut(s)	213, 311, 474
StyI	CCWWGG	2 cut(s)	493, 611
TaaI	ACNGT	2 cut(s)	583, 674
TaiI	ACGT	1 cut(s)	809
TaqII	GACCGA	1 cut(s)	503
TasI	AATT	2 cut(s)	43, 507
TatI	WGTACW	2 cut(s)	156, 405
TfiI	GAWTC	2 cut(s)	17, 163
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	774
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	5 cut(s)	268, 337, 352, 416, 647
TspRI	CASTG	1 cut(s)	774
VneI	GTGCAC	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	43
XceI	RCATGY	3 cut(s)	69, 416, 828
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309
XspI	CTAG	2 cut(s)	71, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.