Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006110

Physical Location & Seq

Genomic Coordinates Forward (+)

5266689 .. 5270836

Gene Structure 4148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06740.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAACATTGGAGAAGCTGCCTTCCCCACTAAATACTGCAAGGTAAATTGGGTAAACCACAGAGAGAATCAAAGAAGCAAAAATCCAAAGTGGCAGATAGACGTGCGCATTCTGAACTCCGCTCGTCAGCTCTGCCAAAAAGTTGTGGTATATAAATCCAACAGGGCCCAAAACTACAAACACCCCCAGATTTCCTTTTTCGAGAGACAGTCTGTCTCGTCTCCTCTCGTGGGCTGCTTCTTGTATCTCTCCTTCTTCTTCTTCCTCCACATTTTCTTTGGTTTTCAGGTATCTGCTTCTTCTGCCCCCAGAAGCTGCTTTTCCATGGCTTCCATTGTTGAATCTGGCTGGAGGTATCTGATCACAAATTTCAACGATTTTCAACTGGCATGTCTAGGAAGTTTCTTTCTACATGAGAGTGTTTTCTTCTTATCTGGACTCCCTTTTATATATCTTGAGAGGGCAGGATGGCTGAGCAAGTACAAGATTCAGACAAAAAATAACAGCCCTGCCGCTCAGGAGAAATGTATTACTCGCCTACTGCTCTATCATTTTTGTGTCAATCTGCCAGTTATGATTGCTTCATACCCCGTCTTCAAATTCATGGGCATGCGCAGTAGTCTTCCATTGCCGTCCTGGAAAGTTGTTTCCACTCAGATCATTTTCTACTTCATCCTAGAGGATTTCGTGTTCTACTGGGGACATAGGGTTCTGCATACAAAATGGTTGTACAAGCATGTGCACAGCGTCCATCACGAATATGCTACACCTTTTGGGCTGACTTCTGAATATGCTCATCCGGCTGAGATATTATTTCTTGGCTTTGCCACCATTATTGGTCCTGCCATTACTGGTCCCCATCTGATTACTCTGTGGTTATGGATGGTACTTAGAGTTCTGGAGACGGTCGAGGCACATTGTGGTTACCATTTCCCATGGAGCCTCTCAAATTTTTTACCGTTGTATGGAGGTGCTGATTTTCACGACTACCACCACCGTTTGCTTTACACCAAGTCTGGCAATTATTCATCGACTTTTGTTTACATGGACAGTTGGAACCGATACGGGTTACAGAAAGTTGAAAGAACTGAAGAGAGCCGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000254 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0030258 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0080065 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

369

Amino Acids

43.02

Weight (kDa)

9.26

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07420 AT1G07420 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390
fragaria_vesca	FvH4_3g37020 FvH4_3g37020
malus_domestica	MD03G1085200.v1.1 MD11G1093000.v1.1
prunus_persica	Prupe.6G068700_v2.0.a1
pyrus_communis	pycom03g06740 pycom11g07860
rosa_chinensis	RchiOBHm_Chr5g0066411
rosa_laevigata	RLG00000035861
rosa_multiflora	Rmu_ssc0000249.1_g000020
rosa_roxburghii	Rroxscaffold_1G00014470 Rroxscaffold_1G00014630
rosa_rugosa	Rorug05G0378100 Rorug05G0378200
rosa_samantha	Rh5AG436900 Rh5BG453100 Rh5CG475500 Rh5DG468300
rosa_wichuraiana	Rw5G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	107, 614
AccBSI	CCGCTC	2 cut(s)	122, 515
AciI	CCGC	2 cut(s)	120, 513
AcsI	RAATTY	3 cut(s)	367, 599, 949
AdeI	CACNNNGTG	1 cut(s)	920
AfaI	GTAC	3 cut(s)	482, 731, 888
AfiI	CCNNNNNNNGG	2 cut(s)	230, 965
AgsI	TTSAA	5 cut(s)	341, 373, 383, 598, 1082
AhdI	GACNNNNNGTC	1 cut(s)	212
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	635
AloI	GAACNNNNNNTCC	4 cut(s)	674, 693, 706, 725
AluBI	AGCT	3 cut(s)	17, 130, 315
AluI	AGCT	3 cut(s)	17, 130, 315
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	4 cut(s)	199, 220, 225, 896
Alw44I	GTGCAC	1 cut(s)	740
AlwNI	CAGNNNCTG	1 cut(s)	315
AoxI	GGCC	1 cut(s)	165
ApaI	GGGCCC	1 cut(s)	169
ApaLI	GTGCAC	1 cut(s)	740
ApeKI	GCWGC	3 cut(s)	17, 234, 315
ApoI	RAATTY	3 cut(s)	367, 599, 949
AspLEI	GCGC	2 cut(s)	108, 615
AspS9I	GGNCC	4 cut(s)	165, 166, 839, 854
AsuC2I	CCSGG	1 cut(s)	1100
AvaII	GGWCC	2 cut(s)	839, 854
BaeGI	GKGCMC	2 cut(s)	169, 744
BanII	GRGCYC	1 cut(s)	169
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BauI	CACGAG	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	586, 614
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	3 cut(s)	4, 221, 302
BccI	CCATC	4 cut(s)	462, 759, 867, 877
BceAI	ACGGC	1 cut(s)	616
BciT130I	CCWGG	1 cut(s)	637
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	1100
BcoDI	GTCTC	4 cut(s)	199, 220, 225, 896
BfaI	CTAG	2 cut(s)	395, 677
BisI	GCNGC	4 cut(s)	18, 235, 316, 513
BlpI	GCTNAGC	1 cut(s)	473
BlsI	GCNGC	4 cut(s)	19, 236, 317, 514
Bme1390I	CCNGG	2 cut(s)	637, 1100
Bme18I	GGWCC	2 cut(s)	839, 854
BmeRI	GACNNNNNGTC	1 cut(s)	212
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	4 cut(s)	165, 166, 839, 854
BmiI	GGNNCC	4 cut(s)	167, 856, 941, 1058
BmrFI	CCNGG	2 cut(s)	637, 1100
BmrI	ACTGGG	1 cut(s)	706
BmuI	ACTGGG	1 cut(s)	706
BpiI	GAAGAC	2 cut(s)	586, 614
BpmI	CTGGAG	2 cut(s)	370, 920
Bpu10I	CCTNAGC	1 cut(s)	516
Bpu1102I	GCTNAGC	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	1100
BsaJI	CCNNGG	3 cut(s)	324, 935, 1099
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 965
Bse1I	ACTGG	4 cut(s)	390, 569, 701, 856
Bse3DI	GCAATG	1 cut(s)	626
BseBI	CCWGG	1 cut(s)	637
BseDI	CCNNGG	3 cut(s)	324, 935, 1099
BseGI	GGATG	4 cut(s)	473, 672, 796, 888
BseLI	CCNNNNNNNGG	2 cut(s)	230, 965
BseMI	GCAATG	1 cut(s)	626
BseMII	CTCAG	4 cut(s)	464, 530, 668, 795
BseNI	ACTGG	4 cut(s)	390, 569, 701, 856
BseRI	GAGGAG	1 cut(s)	213
BseSI	GKGCMC	2 cut(s)	169, 744
BseXI	GCAGC	3 cut(s)	4, 221, 302
Bsh1285I	CGRYCG	1 cut(s)	909
BshFI	GGCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	909
BsiHKAI	GWGCWC	1 cut(s)	744
BsiSI	CCGG	2 cut(s)	800, 1099
BslFI	GGGAC	2 cut(s)	714, 840
BslI	CCNNNNNNNGG	2 cut(s)	230, 965
BsmAI	GTCTC	4 cut(s)	199, 220, 225, 896
BsmBI	CGTCTC	2 cut(s)	225, 896
BsmFI	GGGAC	2 cut(s)	714, 840
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	167
Bsp120I	GGGCCC	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	169, 744
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	2 cut(s)	360, 657
Bsp1720I	GCTNAGC	1 cut(s)	473
Bsp19I	CCATGG	2 cut(s)	324, 935
BspACI	CCGC	2 cut(s)	120, 513
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	4 cut(s)	465, 529, 667, 796
BspLI	GGNNCC	4 cut(s)	167, 856, 941, 1058
BsrBI	CCGCTC	2 cut(s)	122, 515
BsrDI	GCAATG	1 cut(s)	626
BsrGI	TGTACA	1 cut(s)	729
BsrI	ACTGG	4 cut(s)	390, 569, 701, 856
BssECI	CCNNGG	3 cut(s)	324, 935, 1099
BssMI	GATC	2 cut(s)	360, 657
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	2 cut(s)	324, 935
Bst2BI	CACGAG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	637
Bst4CI	ACNGT	5 cut(s)	210, 907, 960, 998, 1052
Bst6I	CTCTTC	1 cut(s)	1086
BstAUI	TGTACA	1 cut(s)	729
BstC8I	GCNNGC	1 cut(s)	611
BstDEI	CTNAG	5 cut(s)	473, 516, 654, 804, 890
BstDSI	CCRYGG	2 cut(s)	324, 935
BstEII	GGTNACC	1 cut(s)	923
BstF5I	GGATG	4 cut(s)	473, 672, 796, 888
BstHHI	GCGC	2 cut(s)	108, 615
BstKTI	GATC	2 cut(s)	363, 660
BstMAI	GTCTC	4 cut(s)	199, 220, 225, 896
BstMBI	GATC	2 cut(s)	360, 657
BstMCI	CGRYCG	1 cut(s)	909
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 800
BstNI	CCWGG	1 cut(s)	637
BstNSI	RCATGY	3 cut(s)	393, 613, 740
BstPI	GGTNACC	1 cut(s)	923
BstSCI	CCNGG	2 cut(s)	635, 1098
BstSLI	GKGCMC	2 cut(s)	169, 744
BstV1I	GCAGC	3 cut(s)	4, 221, 302
BstV2I	GAAGAC	2 cut(s)	586, 614
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	2 cut(s)	324, 935
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	4 cut(s)	473, 672, 796, 888
Cac8I	GCNNGC	1 cut(s)	611
CaiI	CAGNNNCTG	1 cut(s)	315
CfoI	GCGC	2 cut(s)	108, 615
Cfr13I	GGNCC	4 cut(s)	165, 166, 839, 854
CseI	GACGC	1 cut(s)	736
Csp6I	GTAC	3 cut(s)	481, 730, 887
CspCI	CAANNNNNGTGG	2 cut(s)	817, 852
CviAII	CATG	8 cut(s)	325, 390, 413, 604, 610, 737, 936, 1045
CviQI	GTAC	3 cut(s)	481, 730, 887
DdeI	CTNAG	5 cut(s)	473, 516, 654, 804, 890
DpnI	GATC	2 cut(s)	362, 659
DpnII	GATC	2 cut(s)	360, 657
DraIII	CACNNNGTG	1 cut(s)	920
DriI	GACNNNNNGTC	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	1086
Eam1105I	GACNNNNNGTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	1086
Eco130I	CCWWGG	2 cut(s)	324, 935
Eco24I	GRGCYC	1 cut(s)	169
Eco47I	GGWCC	2 cut(s)	839, 854
Eco91I	GGTNACC	1 cut(s)	923
EcoO109I	RGGNCCY	1 cut(s)	165
EcoO65I	GGTNACC	1 cut(s)	923
EcoRII	CCWGG	1 cut(s)	635
EcoT14I	CCWWGG	2 cut(s)	324, 935
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	324, 935
Esp3I	CGTCTC	2 cut(s)	225, 896
FaeI	CATG	8 cut(s)	328, 393, 416, 607, 613, 740, 939, 1048
FaqI	GGGAC	2 cut(s)	714, 840
FatI	CATG	8 cut(s)	324, 389, 412, 603, 609, 736, 935, 1044
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	4 cut(s)	18, 235, 316, 513
FokI	GGATG	4 cut(s)	480, 659, 783, 895
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	18, 235, 316, 513
FspAI	RTGCGCAY	1 cut(s)	107
FspBI	CTAG	2 cut(s)	395, 677
FspI	TGCGCA	2 cut(s)	107, 614
GlaI	GCGC	2 cut(s)	107, 614
GluI	GCNGC	4 cut(s)	18, 235, 316, 513
GsuI	CTGGAG	2 cut(s)	370, 920
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	2 cut(s)	800, 1099
HgaI	GACGC	1 cut(s)	736
HhaI	GCGC	2 cut(s)	108, 615
Hin1II	CATG	8 cut(s)	328, 393, 416, 607, 613, 740, 939, 1048
Hin6I	GCGC	2 cut(s)	106, 613
HinP1I	GCGC	2 cut(s)	106, 613
HinfI	GANTC	4 cut(s)	67, 341, 438, 487
HpaII	CCGG	2 cut(s)	800, 1099
Hpy166II	GTNNAC	3 cut(s)	55, 742, 1042
Hpy188I	TCNGA	6 cut(s)	114, 360, 492, 657, 787, 864
Hpy188III	TCNNGA	7 cut(s)	202, 435, 455, 518, 755, 899, 983
Hpy8I	GTNNAC	3 cut(s)	55, 742, 1042
HpyAV	CCTTC	2 cut(s)	31, 262
HpyCH4III	ACNGT	5 cut(s)	210, 907, 960, 998, 1052
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	39, 715, 742
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 800
HpyF3I	CTNAG	5 cut(s)	473, 516, 654, 804, 890
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	8 cut(s)	328, 393, 416, 607, 613, 740, 939, 1048
HspAI	GCGC	2 cut(s)	106, 613
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	360, 657
LmnI	GCTCC	1 cut(s)	939
Lsp1109I	GCAGC	3 cut(s)	4, 221, 302
MaeI	CTAG	2 cut(s)	395, 677
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	923, 1068
MalI	GATC	2 cut(s)	362, 659
MbiI	CCGCTC	2 cut(s)	122, 515
MboI	GATC	2 cut(s)	360, 657
MboII	GAAGA	8 cut(s)	247, 250, 253, 291, 418, 586, 614, 1103
MhlI	GDGCHC	2 cut(s)	169, 744
MluCI	AATT	5 cut(s)	46, 367, 599, 949, 1021
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	2 cut(s)	183, 1034
MnlI	CCTC	8 cut(s)	234, 275, 345, 453, 673, 904, 953, 962
MslI	CAYNNNNRTG	4 cut(s)	417, 555, 608, 759
MspI	CCGG	2 cut(s)	800, 1099
MspR9I	CCNGG	2 cut(s)	637, 1100
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	637
MwoI	GCNNNNNNNGC	2 cut(s)	302, 800
NciI	CCSGG	1 cut(s)	1100
NcoI	CCATGG	2 cut(s)	324, 935
NdeII	GATC	2 cut(s)	360, 657
NlaIII	CATG	8 cut(s)	328, 393, 416, 607, 613, 740, 939, 1048
NlaIV	GGNNCC	4 cut(s)	167, 856, 941, 1058
NsbI	TGCGCA	2 cut(s)	107, 614
NspI	RCATGY	3 cut(s)	393, 613, 740
PaeI	GCATGC	1 cut(s)	613
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	3 cut(s)	67, 341, 487
PfoI	TCCNGGA	1 cut(s)	635
PkrI	GCNGC	4 cut(s)	19, 236, 317, 514
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	635
PspEI	GGTNACC	1 cut(s)	923
PspGI	CCWGG	1 cut(s)	635
PspN4I	GGNNCC	4 cut(s)	167, 856, 941, 1058
PspOMI	GGGCCC	1 cut(s)	165
PspPI	GGNCC	4 cut(s)	165, 166, 839, 854
PsrI	GAACNNNNNNTAC	2 cut(s)	879, 911
PstNI	CAGNNNCTG	1 cut(s)	315
RsaI	GTAC	3 cut(s)	482, 731, 888
RsaNI	GTAC	3 cut(s)	481, 730, 887
RseI	CAYNNNNRTG	4 cut(s)	417, 555, 608, 759
SatI	GCNGC	4 cut(s)	18, 235, 316, 513
Sau3AI	GATC	2 cut(s)	360, 657
Sau96I	GGNCC	4 cut(s)	165, 166, 839, 854
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	2 cut(s)	637, 1100
SduI	GDGCHC	2 cut(s)	169, 744
SetI	ASST	9 cut(s)	19, 45, 105, 132, 291, 317, 356, 772, 973
SinI	GGWCC	2 cut(s)	839, 854
SmiMI	CAYNNNNRTG	4 cut(s)	417, 555, 608, 759
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SphI	GCATGC	1 cut(s)	613
Sse9I	AATT	5 cut(s)	46, 367, 599, 949, 1021
SsiI	CCGC	2 cut(s)	120, 513
SspMI	CTAG	2 cut(s)	395, 677
StyD4I	CCNGG	2 cut(s)	635, 1098
StyI	CCWWGG	2 cut(s)	324, 935
TaaI	ACNGT	5 cut(s)	210, 907, 960, 998, 1052
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	3 cut(s)	201, 909, 1031
TasI	AATT	5 cut(s)	46, 367, 599, 949, 1021
TatI	WGTACW	2 cut(s)	480, 729
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	3 cut(s)	67, 341, 487
TseI	GCWGC	3 cut(s)	17, 234, 315
TspDTI	ATGAA	5 cut(s)	17, 573, 592, 661, 1017
VneI	GTGCAC	1 cut(s)	740
VpaK11BI	GGWCC	2 cut(s)	839, 854
XapI	RAATTY	3 cut(s)	367, 599, 949
XceI	RCATGY	3 cut(s)	393, 613, 740
XcmI	CCANNNNNNNNNTGG	2 cut(s)	275, 633
XspI	CTAG	2 cut(s)	395, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.