Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006110

Physical Location & Seq

Genomic Coordinates Forward (+)

17911277 .. 17915546

Gene Structure 4270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00014470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCTTCCATTGTTGAATCTGGCTGGCGGCGCAATGATTGTGATCTGGCTAGTGCTTTTGGATTTGGATTTTGTGGTTATTGGGTTTCTTTCTTTTCCAATTTGTTGGTGATATGGACTGTGGAAAGTGACATTAGTGCTGAATTAGGTGCTCAAGAGGACAAATGTGGCTTGTATTCCATCTTTTATAAGAAGTTTAATGATTGGGAGATGGATTTAGTTGCAGATCTATTGAAGCCTTTCAGCCTTTGTGGTGTTAAAGTTAAAGGCAGTGGAAAGGATATGTTTTGTGGAGCTTGTATGGCAAAAATTAACAGCCCAGCAGCTCAGGAGAAATGTATCACTCGCCTGGTGCTATATCATTTTTGTGTCAATCTGCCAGTTATGATTGCTTCATATCCTGTCTTCAAATTCATGGGGATGCGAAGTAGTCTTCCATTGCCGTCCTGGAAAGTAGTTTCAACACAGATAATTTTCTACTTCATCCTAGAGGATTTCATATTCTATTGGGGACATAGGGTTCTGCATACAAAATGGTTGTACAAGCATGTGCACAGCGTTCATCACGAATATGCTACACCTTTTGGACTGACTTCGGAATATGCTCACCCGGCTGAGATATTATTCCTTGGCTTTGCTACAATTGTCGGTCCTGCCATAACTGGGCCTCATCTGATCACTCTGTGGTTATGGATGGTACTCAGAGTGCTGGAGACGGTTGAGGCACATTGTGGTTACCATTTCCCATGGAGCCTCTCCAACTTCTTACCTTTATATGGAGGTGCTGATTTTCATGATTATCATCACCGTTTGCTTTATACCAAGTCTGGCAACTATTCATCAACTTTTGTTTACATGGACAGGATATTTGGAACCGACACTGGTTACAGAAAGTTGAAAGCACTGGAGAAAGCTGGAGTCGAAGATGATGGCGAGGGTACGTGCTATGGCAAGGGTACATGCAACGGCAAGGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000254 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0030258 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0080065 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

326

Amino Acids

37.06

Weight (kDa)

6.52

Isoelectric Point (pI)

29.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	158 - 292	1.8e-27	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07420 AT1G07420 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390
fragaria_vesca	FvH4_3g37020 FvH4_3g37020
malus_domestica	MD03G1085200.v1.1 MD11G1093000.v1.1
prunus_persica	Prupe.6G068700_v2.0.a1
pyrus_communis	pycom03g06740 pycom11g07860
rosa_chinensis	RchiOBHm_Chr5g0066411
rosa_laevigata	RLG00000035861
rosa_multiflora	Rmu_ssc0000249.1_g000020
rosa_roxburghii	Rroxscaffold_1G00014470 Rroxscaffold_1G00014630
rosa_rugosa	Rorug05G0378100 Rorug05G0378200
rosa_samantha	Rh5AG436900 Rh5BG453100 Rh5CG475500 Rh5DG468300
rosa_wichuraiana	Rw5G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AciI	CCGC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	410
AdeI	CACNNNGTG	2 cut(s)	684, 731
AfaI	GTAC	4 cut(s)	542, 699, 940, 958
AfiI	CCNNNNNNNGG	2 cut(s)	663, 776
AgsI	TTSAA	5 cut(s)	17, 235, 409, 462, 898
AjnI	CCWGG	2 cut(s)	348, 446
AloI	GAACNNNNNNTCC	2 cut(s)	504, 536
AluBI	AGCT	3 cut(s)	296, 326, 914
AluI	AGCT	3 cut(s)	296, 326, 914
Alw21I	GWGCWC	2 cut(s)	154, 555
Alw26I	GTCTC	1 cut(s)	707
Alw44I	GTGCAC	1 cut(s)	551
AoxI	GGCC	1 cut(s)	665
ApaLI	GTGCAC	1 cut(s)	551
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	410
ArsI	GACNNNNNNTTYG	2 cut(s)	851, 883
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	650, 665
AsuC2I	CCSGG	1 cut(s)	611
AsuHPI	GGTGA	3 cut(s)	121, 599, 797
AvaII	GGWCC	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	555
BbsI	GAAGAC	2 cut(s)	397, 425
Bbv12I	GWGCWC	2 cut(s)	154, 555
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	4 cut(s)	188, 205, 688, 923
BceAI	ACGGC	1 cut(s)	427
BciT130I	CCWGG	2 cut(s)	350, 448
BclI	TGATCA	1 cut(s)	675
BcnI	CCSGG	1 cut(s)	611
BcoDI	GTCTC	1 cut(s)	707
BfaI	CTAG	2 cut(s)	51, 488
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	2 cut(s)	29, 324
BlsI	GCNGC	2 cut(s)	30, 325
Bme1390I	CCNGG	3 cut(s)	350, 448, 611
Bme18I	GGWCC	1 cut(s)	650
BmgT120I	GGNCC	2 cut(s)	650, 665
BmiI	GGNNCC	2 cut(s)	752, 874
BmrFI	CCNGG	3 cut(s)	350, 448, 611
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	1 cut(s)	411
BmuI	ACTGGG	1 cut(s)	672
BpiI	GAAGAC	2 cut(s)	397, 425
BpmI	CTGGAG	3 cut(s)	731, 926, 936
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	611
BsaAI	YACGTR	1 cut(s)	942
BsaBI	GATNNNNATC	2 cut(s)	42, 801
BsaJI	CCNNGG	2 cut(s)	628, 746
Bsc4I	CCNNNNNNNGG	2 cut(s)	663, 776
Bse1I	ACTGG	4 cut(s)	380, 667, 886, 909
Bse3DI	GCAATG	2 cut(s)	40, 437
Bse8I	GATNNNNATC	2 cut(s)	42, 801
BseBI	CCWGG	2 cut(s)	350, 448
BseDI	CCNNGG	2 cut(s)	628, 746
BseGI	GGATG	3 cut(s)	426, 483, 699
BseJI	GATNNNNATC	2 cut(s)	42, 801
BseLI	CCNNNNNNNGG	2 cut(s)	663, 776
BseMI	GCAATG	2 cut(s)	40, 437
BseMII	CTCAG	3 cut(s)	341, 606, 715
BseNI	ACTGG	4 cut(s)	380, 667, 886, 909
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	335
BseYI	CCCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	667
BsiHKAI	GWGCWC	2 cut(s)	154, 555
BsiSI	CCGG	1 cut(s)	611
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	2 cut(s)	663, 776
BsmAI	GTCTC	1 cut(s)	707
BsmBI	CGTCTC	1 cut(s)	707
BsmFI	GGGAC	1 cut(s)	525
BsnI	GGCC	1 cut(s)	667
Bsp1286I	GDGCHC	2 cut(s)	154, 555
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	3 cut(s)	43, 226, 675
Bsp19I	CCATGG	1 cut(s)	746
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	3 cut(s)	340, 607, 714
BspHI	TCATGA	1 cut(s)	793
BspLI	GGNNCC	2 cut(s)	752, 874
BsrDI	GCAATG	2 cut(s)	40, 437
BsrGI	TGTACA	1 cut(s)	540
BsrI	ACTGG	4 cut(s)	380, 667, 886, 909
BssECI	CCNNGG	2 cut(s)	628, 746
BssMI	GATC	3 cut(s)	43, 226, 675
BssT1I	CCWWGG	2 cut(s)	628, 746
Bst2UI	CCWGG	2 cut(s)	350, 448
Bst4CI	ACNGT	3 cut(s)	121, 718, 809
BstAUI	TGTACA	1 cut(s)	540
BstBAI	YACGTR	1 cut(s)	942
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	3 cut(s)	327, 615, 701
BstDSI	CCRYGG	1 cut(s)	746
BstEII	GGTNACC	1 cut(s)	734
BstF5I	GGATG	3 cut(s)	426, 483, 699
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	46, 229, 678
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	3 cut(s)	43, 226, 675
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 302, 611
BstNI	CCWGG	2 cut(s)	350, 448
BstNSI	RCATGY	2 cut(s)	551, 963
BstPI	GGTNACC	1 cut(s)	734
BstSCI	CCNGG	3 cut(s)	348, 446, 609
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	335
BstV2I	GAAGAC	2 cut(s)	397, 425
BstX2I	RGATCY	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	667
BtgI	CCRYGG	1 cut(s)	746
BtsCI	GGATG	3 cut(s)	426, 483, 699
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	3 cut(s)	277, 879, 902
Cac8I	GCNNGC	1 cut(s)	26
CciI	TCATGA	1 cut(s)	793
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	2 cut(s)	650, 665
Csp6I	GTAC	4 cut(s)	541, 698, 939, 957
CviAII	CATG	6 cut(s)	415, 548, 747, 794, 856, 960
CviQI	GTAC	4 cut(s)	541, 698, 939, 957
DdeI	CTNAG	3 cut(s)	327, 615, 701
DpnI	GATC	3 cut(s)	45, 228, 677
DpnII	GATC	3 cut(s)	43, 226, 675
DraIII	CACNNNGTG	2 cut(s)	684, 731
Eco130I	CCWWGG	2 cut(s)	628, 746
Eco47I	GGWCC	1 cut(s)	650
Eco91I	GGTNACC	1 cut(s)	734
EcoO65I	GGTNACC	1 cut(s)	734
EcoRII	CCWGG	2 cut(s)	348, 446
EcoT14I	CCWWGG	2 cut(s)	628, 746
ErhI	CCWWGG	2 cut(s)	628, 746
Esp3I	CGTCTC	1 cut(s)	707
FaeI	CATG	6 cut(s)	418, 551, 750, 797, 859, 963
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	6 cut(s)	414, 547, 746, 793, 855, 959
FbaI	TGATCA	1 cut(s)	675
Fnu4HI	GCNGC	2 cut(s)	29, 324
FokI	GGATG	3 cut(s)	433, 470, 706
Fsp4HI	GCNGC	2 cut(s)	29, 324
FspBI	CTAG	2 cut(s)	51, 488
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	2 cut(s)	29, 324
GsaI	CCCAGC	1 cut(s)	323
GsuI	CTGGAG	3 cut(s)	731, 926, 936
HaeIII	GGCC	1 cut(s)	667
HapII	CCGG	1 cut(s)	611
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	6 cut(s)	418, 551, 750, 797, 859, 963
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	2 cut(s)	17, 918
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	3 cut(s)	121, 599, 797
Hpy166II	GTNNAC	2 cut(s)	553, 853
Hpy188I	TCNGA	3 cut(s)	598, 675, 704
Hpy188III	TCNNGA	4 cut(s)	155, 329, 566, 794
Hpy8I	GTNNAC	2 cut(s)	553, 853
HpyCH4III	ACNGT	3 cut(s)	121, 718, 809
HpyCH4IV	ACGT	1 cut(s)	941
HpyCH4V	TGCA	4 cut(s)	224, 526, 553, 963
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 302, 611
HpyF3I	CTNAG	3 cut(s)	327, 615, 701
HpySE526I	ACGT	1 cut(s)	941
Hsp92II	CATG	6 cut(s)	418, 551, 750, 797, 859, 963
HspAI	GCGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	675
Kzo9I	GATC	3 cut(s)	43, 226, 675
LmnI	GCTCC	2 cut(s)	293, 750
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	2 cut(s)	51, 488
MaeII	ACGT	1 cut(s)	941
MaeIII	GTNAC	3 cut(s)	128, 734, 884
MalI	GATC	3 cut(s)	45, 228, 677
MboI	GATC	3 cut(s)	43, 226, 675
MboII	GAAGA	3 cut(s)	397, 425, 935
MfeI	CAATTG	1 cut(s)	642
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	2 cut(s)	154, 555
MluCI	AATT	6 cut(s)	100, 143, 309, 410, 471, 642
MlyI	GAGTC	1 cut(s)	927
MmeI	TCCRAC	1 cut(s)	783
MnlI	CCTC	7 cut(s)	151, 484, 678, 715, 764, 773, 928
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	4 cut(s)	198, 258, 264, 312
MslI	CAYNNNNRTG	3 cut(s)	366, 419, 570
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	3 cut(s)	350, 448, 611
MunI	CAATTG	1 cut(s)	642
MvaI	CCWGG	2 cut(s)	350, 448
MwoI	GCNNNNNNNGC	3 cut(s)	30, 302, 611
NciI	CCSGG	1 cut(s)	611
NcoI	CCATGG	1 cut(s)	746
NdeII	GATC	3 cut(s)	43, 226, 675
NlaIII	CATG	6 cut(s)	418, 551, 750, 797, 859, 963
NlaIV	GGNNCC	2 cut(s)	752, 874
NmuCI	GTSAC	1 cut(s)	128
NspI	RCATGY	2 cut(s)	551, 963
PagI	TCATGA	1 cut(s)	793
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	17
PfoI	TCCNGGA	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	30, 325
PleI	GAGTC	1 cut(s)	926
PpsI	GAGTC	1 cut(s)	926
Ppu21I	YACGTR	1 cut(s)	942
PsiI	TTATAA	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	348, 446
PspEI	GGTNACC	1 cut(s)	734
PspFI	CCCAGC	1 cut(s)	319
PspGI	CCWGG	2 cut(s)	348, 446
PspN4I	GGNNCC	2 cut(s)	752, 874
PspPI	GGNCC	2 cut(s)	650, 665
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	4 cut(s)	542, 699, 940, 958
RsaNI	GTAC	4 cut(s)	541, 698, 939, 957
RseI	CAYNNNNRTG	3 cut(s)	366, 419, 570
SaqAI	TTAA	4 cut(s)	198, 258, 264, 312
SatI	GCNGC	2 cut(s)	29, 324
Sau3AI	GATC	3 cut(s)	43, 226, 675
Sau96I	GGNCC	2 cut(s)	650, 665
SchI	GAGTC	1 cut(s)	927
ScrFI	CCNGG	3 cut(s)	350, 448, 611
SduI	GDGCHC	2 cut(s)	154, 555
SetI	ASST	8 cut(s)	151, 298, 328, 583, 772, 784, 916, 944
SfaNI	GCATC	1 cut(s)	411
SinI	GGWCC	1 cut(s)	650
SmiMI	CAYNNNNRTG	3 cut(s)	366, 419, 570
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	6 cut(s)	100, 143, 309, 410, 471, 642
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	2 cut(s)	51, 488
StyD4I	CCNGG	3 cut(s)	348, 446, 609
StyI	CCWWGG	2 cut(s)	628, 746
TaaI	ACNGT	3 cut(s)	121, 718, 809
TaiI	ACGT	1 cut(s)	944
TaqI	TCGA	1 cut(s)	921
TaqII	GACCGA	1 cut(s)	638
TasI	AATT	6 cut(s)	100, 143, 309, 410, 471, 642
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	4 cut(s)	198, 258, 264, 312
Tru9I	TTAA	4 cut(s)	198, 258, 264, 312
TscAI	CASTG	3 cut(s)	277, 886, 909
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	7 cut(s)	384, 403, 472, 487, 551, 782, 828
TspRI	CASTG	3 cut(s)	277, 886, 909
VneI	GTGCAC	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	650
XapI	RAATTY	1 cut(s)	410
XceI	RCATGY	2 cut(s)	551, 963
XcmI	CCANNNNNNNNNTGG	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	2 cut(s)	51, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.