Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006110

Physical Location & Seq

Genomic Coordinates Forward (+)

6876415 .. 6881455

Gene Structure 5041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1085200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCTTCCATTGTTGAATCTGGCTGGAGGTATCTGATCACAAATTTCAACGATTTTCAACTGGCATGTCTAGGAAGTTTCTTTCTACATGAGAGTGTTTTCTTCTTATCTGGACTCCCTTTTATATATCTTGAGAGGGCAGGATGGCTGAGCAAGTACAAGATTCAGACAAAAAATAACAGCCCTGCCGCTCAGGAGAAATGCATTACTCGCCTACTGCTCTATCATTTTTGTGTCAATCTACCAGTTATGATTGCTTCATACCCCGTCTTCAAATTCATGGGCATGCGCAGTAGTCTTCCATTGCCGTCCTGGAAAGTTGTTTCCACTCAGATCATTTTCTACTTCATCCTAGAGGATTTCGTATTCTACTGGGGACATAGGGTTCTGCATACAAAATGGTTGTACAAGCATGTGCACAGCGTCCATCATGAATATGCTACACCTTTTGGGCTGACTTCTGAATATGCTCATCCGGCTGAGATATTATTTCTTGGCTTTGCCACCATTATTGGTCCTGCAATTACTGGTCCCCATCTGATTACTCTGTGGTTATGGATGGTACTTAGAGTTCTGGAGACGGTCGAGGCACATTGTGGTTACCATTTCCCATGGAGCCTCTCAAATTTTTTACCGTTGTATGGAGGTGCTGATTTTCACGACTACCACCACCGTTTGCTTTACACCAAGTCTGGCAATTATTCATCAACTTTTGTTTACATGGACAGGATATTTGGAACCGATACGGGTTACAGAAAGTTGAAAGAACTGAAGAGAGCCGGGGTTGAAGATGACTGCAAGGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000254 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0030258 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0080065 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

270

Amino Acids

31.36

Weight (kDa)

8.2

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	113 - 247	7.6e-28	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07420 AT1G07420 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390
fragaria_vesca	FvH4_3g37020 FvH4_3g37020
malus_domestica	MD03G1085200.v1.1 MD11G1093000.v1.1
prunus_persica	Prupe.6G068700_v2.0.a1
pyrus_communis	pycom03g06740 pycom11g07860
rosa_chinensis	RchiOBHm_Chr5g0066411
rosa_laevigata	RLG00000035861
rosa_multiflora	Rmu_ssc0000249.1_g000020
rosa_roxburghii	Rroxscaffold_1G00014470 Rroxscaffold_1G00014630
rosa_rugosa	Rorug05G0378100 Rorug05G0378200
rosa_samantha	Rh5AG436900 Rh5BG453100 Rh5CG475500 Rh5DG468300
rosa_wichuraiana	Rw5G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	1 cut(s)	189
AcsI	RAATTY	3 cut(s)	43, 275, 625
AcuI	CTGAAG	1 cut(s)	791
AdeI	CACNNNGTG	1 cut(s)	596
AfaI	GTAC	3 cut(s)	158, 407, 564
AfiI	CCNNNNNNNGG	1 cut(s)	641
AgsI	TTSAA	6 cut(s)	17, 49, 59, 274, 763, 788
AjnI	CCWGG	1 cut(s)	311
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	572
Alw44I	GTGCAC	1 cut(s)	416
ApaLI	GTGCAC	1 cut(s)	416
ApoI	RAATTY	3 cut(s)	43, 275, 625
ArsI	GACNNNNNNTTYG	2 cut(s)	716, 748
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	515, 530
AsuC2I	CCSGG	1 cut(s)	781
AvaII	GGWCC	2 cut(s)	515, 530
BaeGI	GKGCMC	1 cut(s)	420
BbsI	GAAGAC	2 cut(s)	262, 290
Bbv12I	GWGCWC	1 cut(s)	420
BccI	CCATC	4 cut(s)	138, 435, 543, 553
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	313
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	781
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	2 cut(s)	71, 353
BisI	GCNGC	1 cut(s)	189
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	313, 781
Bme18I	GGWCC	2 cut(s)	515, 530
BmgT120I	GGNCC	2 cut(s)	515, 530
BmiI	GGNNCC	3 cut(s)	532, 617, 739
BmrFI	CCNGG	2 cut(s)	313, 781
BmrI	ACTGGG	1 cut(s)	382
BmuI	ACTGGG	1 cut(s)	382
BpiI	GAAGAC	2 cut(s)	262, 290
BpmI	CTGGAG	2 cut(s)	46, 596
Bpu10I	CCTNAGC	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	781
BsaJI	CCNNGG	2 cut(s)	611, 780
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
Bse1I	ACTGG	4 cut(s)	66, 245, 377, 532
Bse3DI	GCAATG	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	611, 780
BseGI	GGATG	4 cut(s)	149, 348, 472, 564
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	4 cut(s)	140, 206, 344, 471
BseNI	ACTGG	4 cut(s)	66, 245, 377, 532
BseSI	GKGCMC	1 cut(s)	420
Bsh1285I	CGRYCG	1 cut(s)	585
BsiEI	CGRYCG	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	2 cut(s)	476, 780
BslFI	GGGAC	2 cut(s)	390, 516
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmAI	GTCTC	1 cut(s)	572
BsmBI	CGTCTC	1 cut(s)	572
BsmFI	GGGAC	2 cut(s)	390, 516
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp1407I	TGTACA	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	36, 333
Bsp1720I	GCTNAGC	1 cut(s)	149
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	1 cut(s)	189
BspCNI	CTCAG	4 cut(s)	141, 205, 343, 472
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	3 cut(s)	532, 617, 739
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	405
BsrI	ACTGG	4 cut(s)	66, 245, 377, 532
BssECI	CCNNGG	2 cut(s)	611, 780
BssMI	GATC	2 cut(s)	36, 333
BssT1I	CCWWGG	1 cut(s)	611
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	3 cut(s)	583, 636, 674
Bst6I	CTCTTC	1 cut(s)	767
BstAUI	TGTACA	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	5 cut(s)	149, 192, 330, 480, 566
BstDSI	CCRYGG	1 cut(s)	611
BstEII	GGTNACC	1 cut(s)	599
BstF5I	GGATG	4 cut(s)	149, 348, 472, 564
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	2 cut(s)	39, 336
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	2 cut(s)	36, 333
BstMCI	CGRYCG	1 cut(s)	585
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 476
BstNI	CCWGG	1 cut(s)	313
BstNSI	RCATGY	3 cut(s)	69, 289, 416
BstPI	GGTNACC	1 cut(s)	599
BstSCI	CCNGG	2 cut(s)	311, 779
BstSLI	GKGCMC	1 cut(s)	420
BstV2I	GAAGAC	2 cut(s)	262, 290
BtgI	CCRYGG	1 cut(s)	611
BtsCI	GGATG	4 cut(s)	149, 348, 472, 564
Cac8I	GCNNGC	1 cut(s)	287
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	515, 530
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	3 cut(s)	157, 406, 563
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	8 cut(s)	66, 89, 280, 286, 413, 431, 612, 721
CviJI	RGCY	9 cut(s)	5, 24, 148, 183, 454, 479, 498, 618, 779
CviKI_1	RGCY	9 cut(s)	5, 24, 148, 183, 454, 479, 498, 618, 779
CviQI	GTAC	3 cut(s)	157, 406, 563
DdeI	CTNAG	5 cut(s)	149, 192, 330, 480, 566
DpnI	GATC	2 cut(s)	38, 335
DpnII	GATC	2 cut(s)	36, 333
DraIII	CACNNNGTG	1 cut(s)	596
Eam1104I	CTCTTC	1 cut(s)	767
EarI	CTCTTC	1 cut(s)	767
Eco130I	CCWWGG	1 cut(s)	611
Eco47I	GGWCC	2 cut(s)	515, 530
Eco57I	CTGAAG	1 cut(s)	791
Eco91I	GGTNACC	1 cut(s)	599
EcoO65I	GGTNACC	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	611
EcoT22I	ATGCAT	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	611
Esp3I	CGTCTC	1 cut(s)	572
FaeI	CATG	8 cut(s)	69, 92, 283, 289, 416, 434, 615, 724
FaqI	GGGAC	2 cut(s)	390, 516
FatI	CATG	8 cut(s)	65, 88, 279, 285, 412, 430, 611, 720
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	4 cut(s)	156, 335, 459, 571
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	71, 353
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	189
GsuI	CTGGAG	2 cut(s)	46, 596
HapII	CCGG	2 cut(s)	476, 780
HgaI	GACGC	1 cut(s)	412
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	8 cut(s)	69, 92, 283, 289, 416, 434, 615, 724
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	3 cut(s)	17, 114, 163
HpaII	CCGG	2 cut(s)	476, 780
Hpy166II	GTNNAC	2 cut(s)	418, 718
Hpy188I	TCNGA	5 cut(s)	36, 168, 333, 463, 540
Hpy188III	TCNNGA	6 cut(s)	111, 131, 194, 431, 575, 659
Hpy8I	GTNNAC	2 cut(s)	418, 718
HpyCH4III	ACNGT	3 cut(s)	583, 636, 674
HpyCH4V	TGCA	5 cut(s)	204, 391, 418, 521, 798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 476
HpyF3I	CTNAG	5 cut(s)	149, 192, 330, 480, 566
Hsp92II	CATG	8 cut(s)	69, 92, 283, 289, 416, 434, 615, 724
HspAI	GCGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 333
LmnI	GCTCC	1 cut(s)	615
MaeI	CTAG	2 cut(s)	71, 353
MaeIII	GTNAC	2 cut(s)	599, 749
MalI	GATC	2 cut(s)	38, 335
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	2 cut(s)	36, 333
MboII	GAAGA	5 cut(s)	94, 262, 290, 784, 800
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	5 cut(s)	43, 275, 522, 625, 697
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	6 cut(s)	21, 129, 349, 580, 629, 638
Mph1103I	ATGCAT	1 cut(s)	206
MslI	CAYNNNNRTG	4 cut(s)	93, 231, 284, 435
MspI	CCGG	2 cut(s)	476, 780
MspR9I	CCNGG	2 cut(s)	313, 781
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	210, 476
NciI	CCSGG	1 cut(s)	781
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	2 cut(s)	36, 333
NlaIII	CATG	8 cut(s)	69, 92, 283, 289, 416, 434, 615, 724
NlaIV	GGNNCC	3 cut(s)	532, 617, 739
NsbI	TGCGCA	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	206
NspI	RCATGY	3 cut(s)	69, 289, 416
PaeI	GCATGC	1 cut(s)	289
PagI	TCATGA	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	17, 163
PfoI	TCCNGGA	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	311
PspEI	GGTNACC	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	3 cut(s)	532, 617, 739
PspPI	GGNCC	2 cut(s)	515, 530
PsrI	GAACNNNNNNTAC	2 cut(s)	555, 587
RsaI	GTAC	3 cut(s)	158, 407, 564
RsaNI	GTAC	3 cut(s)	157, 406, 563
RseI	CAYNNNNRTG	4 cut(s)	93, 231, 284, 435
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	36, 333
Sau96I	GGNCC	2 cut(s)	515, 530
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	313, 781
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	3 cut(s)	32, 448, 649
SinI	GGWCC	2 cut(s)	515, 530
SmiMI	CAYNNNNRTG	4 cut(s)	93, 231, 284, 435
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	5 cut(s)	43, 275, 522, 625, 697
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	2 cut(s)	71, 353
StyD4I	CCNGG	2 cut(s)	311, 779
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	3 cut(s)	583, 636, 674
TaqI	TCGA	1 cut(s)	585
TasI	AATT	5 cut(s)	43, 275, 522, 625, 697
TatI	WGTACW	2 cut(s)	156, 405
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	17, 163
TspDTI	ATGAA	5 cut(s)	249, 268, 337, 447, 693
VneI	GTGCAC	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	515, 530
XapI	RAATTY	3 cut(s)	43, 275, 625
XceI	RCATGY	3 cut(s)	69, 289, 416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309
XspI	CTAG	2 cut(s)	71, 353
Zsp2I	ATGCAT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.