Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006110

Physical Location & Seq

Genomic Coordinates Reverse (-)

51248640 .. 51249541

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0378200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTTTTCTTCTCTGACTCTCTCACGAGAGGTTTCTCGCTTGCGGCTAAGCAAATCTAGCGGCGGCGCTGTACCTACGATTGGACAGACTGGGCTTGCCCTCGTCTCTGGTCGGCTTTTGAGTGGCGGTTGGTTTTGGTGGAGGATCTTTTGGTTGTGGTTTTGTCGACGGCTCGACGCAGCTGGGGGTGTTGATGGTGGCTCTGGAATTGATCTGCTGCTCTGTGGTGATGAGGGTGGTAGTCTTGTTGCAGACGGGGGCTGGTTGATCTCCGGATCGGCTACTAAGGGGGGTGGTGCTGGATTTGGTAGGCTTTGCACCGAAATCGGATCTGTATGGTGGCCGGGGTCGAATCCTCGTGATGGCCTTGGTAATCCAATCGTCGCTACTTTTGACGACGAGGGCTGGGACTGGGTTATGGTCGGGCTTTACGGCGGTGGAACTGTGGCTGGTTGTCATGCCGGAATCCGGGCGGCCATCGGTGACGGATGCAAGGTCGGGGGCGGCAACTTTACAGGGGCTGCGGACGTCGGGCTTGCTAGGGTTCACATGGTTTGGGGAGTCTGGGCCCCTGATTGGGCTTTGGTTTGTGCTAATGGTGGCGGCAGTGCTAATGGTGGTCCAGAGGATTGGGACTGCTGCTTTGATGCTAGGGTTTCCTGGGAGAAGAGCGGTTGGGCTCCAAACAAGTTGTTGGGCCTAGGGGGGCTTGCCCTAGGGTTTACCCAAATTAGGCCTTGGATGTGGTTAATTTTGACAGGGCTATGGATCCATTTTGGGTCGTCTCCTGATGTAGAGGATAATGTGGAAGGTGGTCTGTCACCTTCTACTGCTAGTTTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000254 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0030258 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0080065 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

281

Amino Acids

29.22

Weight (kDa)

4.9

Isoelectric Point (pI)

32.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07420 AT1G07420 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390
fragaria_vesca	FvH4_3g37020 FvH4_3g37020
malus_domestica	MD03G1085200.v1.1 MD11G1093000.v1.1
prunus_persica	Prupe.6G068700_v2.0.a1
pyrus_communis	pycom03g06740 pycom11g07860
rosa_chinensis	RchiOBHm_Chr5g0066411
rosa_laevigata	RLG00000035861
rosa_multiflora	Rmu_ssc0000249.1_g000020
rosa_roxburghii	Rroxscaffold_1G00014470 Rroxscaffold_1G00014630
rosa_rugosa	Rorug05G0378100 Rorug05G0378200
rosa_samantha	Rh5AG436900 Rh5BG453100 Rh5CG475500 Rh5DG468300
rosa_wichuraiana	Rw5G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	531
AccBSI	CCGCTC	1 cut(s)	672
AccI	GTMKAC	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	272
AclWI	GGATC	5 cut(s)	152, 283, 337, 763, 776
AcoI	YGGCCR	2 cut(s)	341, 474
AcyI	GRCGYC	1 cut(s)	528
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	6 cut(s)	80, 362, 468, 576, 577, 732
AjnI	CCWGG	1 cut(s)	659
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw26I	GTCTC	2 cut(s)	109, 789
AlwI	GGATC	5 cut(s)	152, 283, 337, 763, 776
AlwNI	CAGNNNCTG	1 cut(s)	521
Aor13HI	TCCGGA	1 cut(s)	272
AoxI	GGCC	6 cut(s)	341, 364, 474, 567, 697, 734
ApaI	GGGCCC	1 cut(s)	571
ApeKI	GCWGC	4 cut(s)	179, 217, 521, 639
ArsI	GACNNNNNNTTYG	2 cut(s)	626, 658
AspA2I	CCTAGG	2 cut(s)	700, 715
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	4 cut(s)	567, 568, 620, 697
AsuC2I	CCSGG	2 cut(s)	345, 470
AsuHPI	GGTGA	3 cut(s)	239, 494, 813
AvaII	GGWCC	1 cut(s)	620
AvrII	CCTAGG	2 cut(s)	700, 715
BaeGI	GKGCMC	1 cut(s)	571
BamHI	GGATCC	1 cut(s)	768
BanII	GRGCYC	2 cut(s)	571, 682
BauI	CACGAG	2 cut(s)	24, 357
BbvI	GCAGC	4 cut(s)	191, 204, 508, 626
BccI	CCATC	3 cut(s)	188, 356, 485
BceAI	ACGGC	2 cut(s)	185, 448
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BciT130I	CCWGG	1 cut(s)	661
BcnI	CCSGG	2 cut(s)	345, 470
BcoDI	GTCTC	2 cut(s)	109, 789
BfaI	CTAG	6 cut(s)	57, 540, 651, 701, 716, 834
BfoI	RGCGCY	1 cut(s)	69
BlnI	CCTAGG	2 cut(s)	700, 715
BlpI	GCTNAGC	1 cut(s)	47
Bme1390I	CCNGG	3 cut(s)	345, 470, 661
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	4 cut(s)	567, 568, 620, 697
BmiI	GGNNCC	4 cut(s)	569, 570, 681, 770
BmrFI	CCNGG	3 cut(s)	345, 470, 661
BmrI	ACTGGG	2 cut(s)	99, 421
BmsI	GCATC	2 cut(s)	479, 637
BmuI	ACTGGG	2 cut(s)	99, 421
Bpu1102I	GCTNAGC	1 cut(s)	47
BpuMI	CCSGG	2 cut(s)	345, 470
BsaHI	GRCGYC	1 cut(s)	528
BsaJI	CCNNGG	6 cut(s)	344, 367, 660, 700, 715, 737
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	6 cut(s)	80, 362, 468, 576, 577, 732
Bse1I	ACTGG	2 cut(s)	94, 416
BseAI	TCCGGA	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	661
BseDI	CCNNGG	6 cut(s)	344, 367, 660, 700, 715, 737
BseGI	GGATG	2 cut(s)	494, 747
BseLI	CCNNNNNNNGG	6 cut(s)	80, 362, 468, 576, 577, 732
BseNI	ACTGG	2 cut(s)	94, 416
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	4 cut(s)	191, 204, 508, 626
BseYI	CCCAGC	2 cut(s)	182, 405
BshFI	GGCC	6 cut(s)	343, 366, 476, 569, 699, 736
BsiSI	CCGG	4 cut(s)	273, 344, 462, 469
BslFI	GGGAC	2 cut(s)	422, 647
BslI	CCNNNNNNNGG	6 cut(s)	80, 362, 468, 576, 577, 732
BsmAI	GTCTC	2 cut(s)	109, 789
BsmBI	CGTCTC	2 cut(s)	109, 789
BsmFI	GGGAC	2 cut(s)	422, 647
BsnI	GGCC	6 cut(s)	343, 366, 476, 569, 699, 736
Bsp120I	GGGCCC	1 cut(s)	567
Bsp1286I	GDGCHC	2 cut(s)	571, 682
Bsp13I	TCCGGA	1 cut(s)	272
Bsp143I	GATC	6 cut(s)	144, 211, 267, 275, 329, 768
Bsp1720I	GCTNAGC	1 cut(s)	47
BspANI	GGCC	6 cut(s)	343, 366, 476, 569, 699, 736
BspEI	TCCGGA	1 cut(s)	272
BspLI	GGNNCC	4 cut(s)	569, 570, 681, 770
BspPI	GGATC	5 cut(s)	152, 283, 337, 763, 776
BspQI	GCTCTTC	1 cut(s)	662
BsrBI	CCGCTC	1 cut(s)	672
BsrI	ACTGG	2 cut(s)	94, 416
BssECI	CCNNGG	6 cut(s)	344, 367, 660, 700, 715, 737
BssMI	GATC	6 cut(s)	144, 211, 267, 275, 329, 768
BssNI	GRCGYC	1 cut(s)	528
BssSI	CACGAG	2 cut(s)	24, 357
BssT1I	CCWWGG	4 cut(s)	367, 700, 715, 737
Bst2BI	CACGAG	2 cut(s)	24, 357
Bst2UI	CCWGG	1 cut(s)	661
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	662
BstACI	GRCGYC	1 cut(s)	528
BstC8I	GCNNGC	4 cut(s)	41, 96, 537, 711
BstDEI	CTNAG	2 cut(s)	47, 285
BstF5I	GGATG	2 cut(s)	494, 747
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	6 cut(s)	147, 214, 270, 278, 332, 771
BstMAI	GTCTC	2 cut(s)	109, 789
BstMBI	GATC	6 cut(s)	144, 211, 267, 275, 329, 768
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNI	CCWGG	1 cut(s)	661
BstSCI	CCNGG	3 cut(s)	343, 468, 659
BstSLI	GKGCMC	1 cut(s)	571
BstV1I	GCAGC	4 cut(s)	191, 204, 508, 626
BstX2I	RGATCY	3 cut(s)	144, 329, 768
BstXI	CCANNNNNNTGG	1 cut(s)	630
BstYI	RGATCY	3 cut(s)	144, 329, 768
BsuRI	GGCC	6 cut(s)	343, 366, 476, 569, 699, 736
BtsCI	GGATG	2 cut(s)	494, 747
BtsI	GCAGTG	1 cut(s)	613
BtsIMutI	CAGTG	1 cut(s)	613
Cac8I	GCNNGC	4 cut(s)	41, 96, 537, 711
CaiI	CAGNNNCTG	1 cut(s)	521
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	4 cut(s)	567, 568, 620, 697
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	2 cut(s)	458, 550
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	2 cut(s)	47, 285
DpnI	GATC	6 cut(s)	146, 213, 269, 277, 331, 770
DpnII	GATC	6 cut(s)	144, 211, 267, 275, 329, 768
EaeI	YGGCCR	2 cut(s)	341, 474
Eam1104I	CTCTTC	1 cut(s)	662
EarI	CTCTTC	1 cut(s)	662
Eco130I	CCWWGG	4 cut(s)	367, 700, 715, 737
Eco147I	AGGCCT	1 cut(s)	736
Eco24I	GRGCYC	2 cut(s)	571, 682
Eco47I	GGWCC	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	659
EcoT14I	CCWWGG	4 cut(s)	367, 700, 715, 737
EcoT38I	GRGCYC	2 cut(s)	571, 682
ErhI	CCWWGG	4 cut(s)	367, 700, 715, 737
Esp3I	CGTCTC	2 cut(s)	109, 789
FaeI	CATG	2 cut(s)	461, 553
FaiI	YATR	5 cut(s)	337, 419, 459, 551, 766
FaqI	GGGAC	2 cut(s)	422, 647
FatI	CATG	2 cut(s)	457, 549
FblI	GTMKAC	1 cut(s)	166
FokI	GGATG	2 cut(s)	501, 754
FriOI	GRGCYC	2 cut(s)	571, 682
FspBI	CTAG	6 cut(s)	57, 540, 651, 701, 716, 834
GlaI	GCGC	1 cut(s)	67
GsaI	CCCAGC	2 cut(s)	186, 409
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	6 cut(s)	343, 366, 476, 569, 699, 736
HapII	CCGG	4 cut(s)	273, 344, 462, 469
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	528
Hin1II	CATG	2 cut(s)	461, 553
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HinfI	GANTC	4 cut(s)	16, 352, 465, 561
HpaII	CCGG	4 cut(s)	273, 344, 462, 469
HphI	GGTGA	3 cut(s)	239, 494, 813
Hpy166II	GTNNAC	3 cut(s)	167, 547, 723
Hpy188I	TCNGA	2 cut(s)	15, 329
Hpy188III	TCNNGA	6 cut(s)	24, 204, 273, 359, 623, 788
Hpy8I	GTNNAC	3 cut(s)	167, 547, 723
Hpy99I	CGWCG	5 cut(s)	171, 179, 386, 401, 533
HpyAV	CCTTC	2 cut(s)	803, 834
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	3 cut(s)	251, 318, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	2 cut(s)	47, 285
HpySE526I	ACGT	1 cut(s)	528
Hsp92I	GRCGYC	1 cut(s)	528
Hsp92II	CATG	2 cut(s)	461, 553
HspAI	GCGC	1 cut(s)	66
Kpn2I	TCCGGA	1 cut(s)	272
Kzo9I	GATC	6 cut(s)	144, 211, 267, 275, 329, 768
LguI	GCTCTTC	1 cut(s)	662
LmnI	GCTCC	1 cut(s)	685
Lsp1109I	GCAGC	4 cut(s)	191, 204, 508, 626
LweI	GCATC	2 cut(s)	479, 637
MaeI	CTAG	6 cut(s)	57, 540, 651, 701, 716, 834
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	482, 819
MalI	GATC	6 cut(s)	146, 213, 269, 277, 331, 770
MbiI	CCGCTC	1 cut(s)	672
MboI	GATC	6 cut(s)	144, 211, 267, 275, 329, 768
MboII	GAAGA	1 cut(s)	679
MflI	RGATCY	3 cut(s)	144, 329, 768
MhlI	GDGCHC	2 cut(s)	571, 682
MluCI	AATT	4 cut(s)	207, 729, 750, 840
MlyI	GAGTC	2 cut(s)	10, 570
MnlI	CCTC	8 cut(s)	22, 110, 135, 226, 366, 394, 619, 790
MroI	TCCGGA	1 cut(s)	272
MseI	TTAA	3 cut(s)	749, 839, 844
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	4 cut(s)	273, 344, 462, 469
MspR9I	CCNGG	3 cut(s)	345, 470, 661
MvaI	CCWGG	1 cut(s)	661
MwoI	GCNNNNNNNGC	1 cut(s)	57
NciI	CCSGG	2 cut(s)	345, 470
NdeII	GATC	6 cut(s)	144, 211, 267, 275, 329, 768
NlaIII	CATG	2 cut(s)	461, 553
NlaIV	GGNNCC	4 cut(s)	569, 570, 681, 770
NmuCI	GTSAC	2 cut(s)	482, 819
PceI	AGGCCT	1 cut(s)	736
PciSI	GCTCTTC	1 cut(s)	662
PfeI	GAWTC	2 cut(s)	352, 465
PleI	GAGTC	2 cut(s)	10, 569
PpsI	GAGTC	2 cut(s)	10, 569
Psp6I	CCWGG	1 cut(s)	659
PspFI	CCCAGC	2 cut(s)	182, 405
PspGI	CCWGG	1 cut(s)	659
PspN4I	GGNNCC	4 cut(s)	569, 570, 681, 770
PspOMI	GGGCCC	1 cut(s)	567
PspPI	GGNCC	4 cut(s)	567, 568, 620, 697
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	3 cut(s)	144, 329, 768
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SalI	GTCGAC	1 cut(s)	165
SapI	GCTCTTC	1 cut(s)	662
SaqAI	TTAA	3 cut(s)	749, 839, 844
Sau3AI	GATC	6 cut(s)	144, 211, 267, 275, 329, 768
Sau96I	GGNCC	4 cut(s)	567, 568, 620, 697
SchI	GAGTC	2 cut(s)	10, 570
ScrFI	CCNGG	3 cut(s)	345, 470, 661
SduI	GDGCHC	2 cut(s)	571, 682
SetI	ASST	7 cut(s)	33, 76, 184, 498, 531, 814, 826
SfaNI	GCATC	2 cut(s)	479, 637
SinI	GGWCC	1 cut(s)	620
Sse9I	AATT	4 cut(s)	207, 729, 750, 840
SseBI	AGGCCT	1 cut(s)	736
SspMI	CTAG	6 cut(s)	57, 540, 651, 701, 716, 834
StuI	AGGCCT	1 cut(s)	736
StyD4I	CCNGG	3 cut(s)	343, 468, 659
StyI	CCWWGG	4 cut(s)	367, 700, 715, 737
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	3 cut(s)	166, 174, 350
TasI	AATT	4 cut(s)	207, 729, 750, 840
TauI	GCSGC	6 cut(s)	46, 63, 66, 476, 507, 606
TfiI	GAWTC	2 cut(s)	352, 465
Tru1I	TTAA	3 cut(s)	749, 839, 844
Tru9I	TTAA	3 cut(s)	749, 839, 844
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	2 cut(s)	482, 819
TseI	GCWGC	4 cut(s)	179, 217, 521, 639
Tsp45I	GTSAC	2 cut(s)	482, 819
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	620
XmaJI	CCTAGG	2 cut(s)	700, 715
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	6 cut(s)	57, 540, 651, 701, 716, 834
ZraI	GACGTC	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.