Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006110

Physical Location & Seq

Genomic Coordinates Reverse (-)

12610508 .. 12612937

Gene Structure 2430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGATTCTCTCGTTGAATCCGGTTGGAAGTACCTTGTTACGCATTTCAGTGACTTTCAACTGGCGTGTATTGGGAGTTTTATACTTCATGAAAGCGTGTTTTTCTTGTCTGGACTCCCTTACATTTTCCTAGAAAGGACTGGTTTTCTGAGCAACTACAAAATTCAGACCAAAAGTAATACTCCTGAAGCCCAGGGAAAATGCATTGCTCGACTATTACTTTACCATTGCTGCGTAAACTTGCCCCTCATGATGGCGTCGTATCCTGTATTCAGATTCATGGGCATGGAAAGCAGTTTTCCTCTGCCGTCCTGGAAAGTGGTGTCTGCCCAGATCTTATTCTACTTCATCATTGAGGATTTTGTATTCTATTGGGGTCACAGGATCTTGCATACTAAATGGCTCTACAAGAACGTGCACAGTGTGCATCATGAGTACGCGACACCGTTTGGTTTGACATCAGAATATGCTCATCCCGCTGAAATTCTGTTCCTTGGTTTTGCTACCATTGTTGGTCCGGCTCTCACCGGGCCTCACCTGATCACCCTTTGGTTATGGATGATGCTCAGAGTTATTGAGACAGTTGAGGCACATTGTGGTTATCATTTCCCATGGAGCCCCTCGAATTTTCTTCCTCTATACGGCGGATCTTTAATATTAATGTGGGAATCATTTGCTTACAGTGCTGACTTCCATGACTACCATCATCGATTACTCTACACAAAGTCTGGCAACTACTCATCAACGTTTGTTTACATGGACTGGATCTTTGGCACCGATAAAGGTTACAGAAAACTTAAGGCCCTAAAAGAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000254 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0030258 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0080065 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

272

Amino Acids

31.65

Weight (kDa)

6.94

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	113 - 259	8e-27	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07420 AT1G07420 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390
fragaria_vesca	FvH4_3g37020 FvH4_3g37020
malus_domestica	MD03G1085200.v1.1 MD11G1093000.v1.1
prunus_persica	Prupe.6G068700_v2.0.a1
pyrus_communis	pycom03g06740 pycom11g07860
rosa_chinensis	RchiOBHm_Chr5g0066411
rosa_laevigata	RLG00000035861
rosa_multiflora	Rmu_ssc0000249.1_g000020
rosa_roxburghii	Rroxscaffold_1G00014470 Rroxscaffold_1G00014630
rosa_rugosa	Rorug05G0378100 Rorug05G0378200
rosa_samantha	Rh5AG436900 Rh5BG453100 Rh5CG475500 Rh5DG468300
rosa_wichuraiana	Rw5G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	773
AccII	CGCG	1 cut(s)	440
AciI	CCGC	2 cut(s)	477, 645
AclI	AACGTT	1 cut(s)	746
AclWI	GGATC	3 cut(s)	392, 655, 773
AcsI	RAATTY	3 cut(s)	162, 483, 625
AcuI	CTGAAG	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	257
AdeI	CACNNNGTG	2 cut(s)	424, 596
AfaI	GTAC	2 cut(s)	32, 437
AfiI	CCNNNNNNNGG	2 cut(s)	253, 641
AflII	CTTAAG	1 cut(s)	797
AgsI	TTSAA	2 cut(s)	17, 59
AjnI	CCWGG	2 cut(s)	192, 311
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	572
Alw44I	GTGCAC	1 cut(s)	416
AlwI	GGATC	3 cut(s)	392, 655, 773
AoxI	GGCC	2 cut(s)	530, 801
ApaLI	GTGCAC	1 cut(s)	416
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	3 cut(s)	162, 483, 625
ArsI	GACNNNNNNTTYG	2 cut(s)	752, 784
AseI	ATTAAT	1 cut(s)	659
AspS9I	GGNCC	3 cut(s)	515, 530, 802
AsuC2I	CCSGG	1 cut(s)	529
AsuHPI	GGTGA	3 cut(s)	517, 527, 535
AvaII	GGWCC	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	773
BanII	GRGCYC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	2 cut(s)	247, 711
BceAI	ACGGC	2 cut(s)	292, 658
BciT130I	CCWGG	2 cut(s)	194, 313
BciVI	GTATCC	1 cut(s)	273
BclI	TGATCA	1 cut(s)	540
BcnI	CCSGG	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	1 cut(s)	131
BfrI	CTTAAG	1 cut(s)	797
BfuI	GTATCC	1 cut(s)	273
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
Bme1390I	CCNGG	3 cut(s)	194, 313, 529
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	3 cut(s)	515, 530, 802
BmiI	GGNNCC	2 cut(s)	617, 775
BmrFI	CCNGG	3 cut(s)	194, 313, 529
BmsI	GCATC	2 cut(s)	436, 552
BpuMI	CCSGG	1 cut(s)	529
Bsa29I	ATCGAT	1 cut(s)	709
BsaHI	GRCGYC	1 cut(s)	257
BsaJI	CCNNGG	4 cut(s)	192, 193, 493, 611
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 641
Bse1I	ACTGG	3 cut(s)	66, 145, 767
Bse3DI	GCAATG	2 cut(s)	204, 226
BseBI	CCWGG	2 cut(s)	194, 313
BseCI	ATCGAT	1 cut(s)	709
BseDI	CCNNGG	4 cut(s)	192, 193, 493, 611
BseGI	GGATG	2 cut(s)	472, 564
BseLI	CCNNNNNNNGG	2 cut(s)	253, 641
BseMI	GCAATG	2 cut(s)	204, 226
BseMII	CTCAG	2 cut(s)	140, 580
BseNI	ACTGG	3 cut(s)	66, 145, 767
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	2 cut(s)	532, 803
BshNI	GGYRCC	1 cut(s)	773
BshVI	ATCGAT	1 cut(s)	709
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	3 cut(s)	21, 518, 528
BslI	CCNNNNNNNGG	2 cut(s)	253, 641
BsmAI	GTCTC	1 cut(s)	572
BsnI	GGCC	2 cut(s)	532, 803
Bsp1286I	GDGCHC	2 cut(s)	420, 620
Bsp143I	GATC	5 cut(s)	333, 384, 540, 647, 765
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	2 cut(s)	477, 645
BspANI	GGCC	2 cut(s)	532, 803
BspCNI	CTCAG	2 cut(s)	141, 579
BspDI	ATCGAT	1 cut(s)	709
BspFNI	CGCG	1 cut(s)	440
BspHI	TCATGA	3 cut(s)	88, 249, 430
BspLI	GGNNCC	2 cut(s)	617, 775
BspPI	GGATC	3 cut(s)	392, 655, 773
BspT107I	GGYRCC	1 cut(s)	773
BspTI	CTTAAG	1 cut(s)	797
BsrDI	GCAATG	2 cut(s)	204, 226
BsrI	ACTGG	3 cut(s)	66, 145, 767
BssECI	CCNNGG	4 cut(s)	192, 193, 493, 611
BssMI	GATC	5 cut(s)	333, 384, 540, 647, 765
BssNI	GRCGYC	1 cut(s)	257
BssT1I	CCWWGG	2 cut(s)	493, 611
Bst2UI	CCWGG	2 cut(s)	194, 313
Bst4CI	ACNGT	4 cut(s)	422, 447, 583, 683
BstACI	GRCGYC	1 cut(s)	257
BstAFI	CTTAAG	1 cut(s)	797
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	149, 566
BstDSI	CCRYGG	1 cut(s)	611
BstF5I	GGATG	2 cut(s)	472, 564
BstFNI	CGCG	1 cut(s)	440
BstKTI	GATC	5 cut(s)	336, 387, 543, 650, 768
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	5 cut(s)	333, 384, 540, 647, 765
BstMWI	GCNNNNNNNGC	4 cut(s)	291, 424, 476, 683
BstNI	CCWGG	2 cut(s)	194, 313
BstSCI	CCNGG	3 cut(s)	192, 311, 527
BstSLI	GKGCMC	1 cut(s)	420
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	1 cut(s)	218
BstX2I	RGATCY	4 cut(s)	333, 384, 647, 765
BstYI	RGATCY	4 cut(s)	333, 384, 647, 765
Bsu15I	ATCGAT	1 cut(s)	709
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	532, 803
BsuTUI	ATCGAT	1 cut(s)	709
BtgI	CCRYGG	1 cut(s)	611
BtsCI	GGATG	2 cut(s)	472, 564
BtsIMutI	CAGTG	3 cut(s)	55, 427, 688
CciI	TCATGA	3 cut(s)	88, 249, 430
Cfr13I	GGNCC	3 cut(s)	515, 530, 802
ClaI	ATCGAT	1 cut(s)	709
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	31, 436
CviAII	CATG	8 cut(s)	89, 250, 280, 286, 431, 612, 695, 757
CviJI	RGCY	6 cut(s)	191, 403, 521, 532, 618, 803
CviKI_1	RGCY	6 cut(s)	191, 403, 521, 532, 618, 803
CviQI	GTAC	2 cut(s)	31, 436
DdeI	CTNAG	2 cut(s)	149, 566
DpnI	GATC	5 cut(s)	335, 386, 542, 649, 767
DpnII	GATC	5 cut(s)	333, 384, 540, 647, 765
DraIII	CACNNNGTG	2 cut(s)	424, 596
EciI	GGCGGA	1 cut(s)	660
Eco130I	CCWWGG	2 cut(s)	493, 611
Eco24I	GRGCYC	1 cut(s)	620
Eco47I	GGWCC	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	802
EcoRII	CCWGG	2 cut(s)	192, 311
EcoT14I	CCWWGG	2 cut(s)	493, 611
EcoT22I	ATGCAT	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	620
ErhI	CCWWGG	2 cut(s)	493, 611
FaeI	CATG	8 cut(s)	92, 253, 283, 289, 434, 615, 698, 760
FatI	CATG	8 cut(s)	88, 249, 279, 285, 430, 611, 694, 756
FauI	CCCGC	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	2 cut(s)	459, 571
FriOI	GRGCYC	1 cut(s)	620
Fsp4HI	GCNGC	1 cut(s)	232
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	1 cut(s)	232
HaeIII	GGCC	2 cut(s)	532, 803
HapII	CCGG	3 cut(s)	21, 518, 528
HgaI	GACGC	1 cut(s)	246
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	8 cut(s)	92, 253, 283, 289, 434, 615, 698, 760
HinfI	GANTC	5 cut(s)	5, 17, 114, 276, 668
HpaII	CCGG	3 cut(s)	21, 518, 528
HphI	GGTGA	3 cut(s)	517, 527, 535
Hpy166II	GTNNAC	3 cut(s)	238, 418, 754
Hpy188I	TCNGA	5 cut(s)	150, 168, 275, 463, 569
Hpy188III	TCNNGA	5 cut(s)	89, 111, 185, 250, 431
Hpy8I	GTNNAC	3 cut(s)	238, 418, 754
Hpy99I	CGWCG	1 cut(s)	262
HpyCH4III	ACNGT	4 cut(s)	422, 447, 583, 683
HpyCH4IV	ACGT	2 cut(s)	414, 746
HpyCH4V	TGCA	4 cut(s)	204, 391, 418, 427
HpyF10VI	GCNNNNNNNGC	4 cut(s)	291, 424, 476, 683
HpyF3I	CTNAG	2 cut(s)	149, 566
HpySE526I	ACGT	2 cut(s)	414, 746
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	8 cut(s)	92, 253, 283, 289, 434, 615, 698, 760
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	5 cut(s)	333, 384, 540, 647, 765
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	2 cut(s)	436, 552
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	2 cut(s)	414, 746
MaeIII	GTNAC	4 cut(s)	37, 50, 377, 785
MalI	GATC	5 cut(s)	335, 386, 542, 649, 767
MboI	GATC	5 cut(s)	333, 384, 540, 647, 765
MboII	GAAGA	1 cut(s)	623
MflI	RGATCY	4 cut(s)	333, 384, 647, 765
MhlI	GDGCHC	2 cut(s)	420, 620
MluCI	AATT	3 cut(s)	162, 483, 625
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	5
MnlI	CCTC	7 cut(s)	257, 312, 349, 543, 580, 631, 645
Mph1103I	ATGCAT	1 cut(s)	206
MseI	TTAA	3 cut(s)	653, 659, 798
MslI	CAYNNNNRTG	2 cut(s)	48, 284
MspA1I	CMGCKG	1 cut(s)	479
MspCI	CTTAAG	1 cut(s)	797
MspI	CCGG	3 cut(s)	21, 518, 528
MspR9I	CCNGG	3 cut(s)	194, 313, 529
MvaI	CCWGG	2 cut(s)	194, 313
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	4 cut(s)	291, 424, 476, 683
NciI	CCSGG	1 cut(s)	529
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	5 cut(s)	333, 384, 540, 647, 765
NlaIII	CATG	8 cut(s)	92, 253, 283, 289, 434, 615, 698, 760
NlaIV	GGNNCC	2 cut(s)	617, 775
NmuCI	GTSAC	2 cut(s)	50, 377
NsiI	ATGCAT	1 cut(s)	206
PagI	TCATGA	3 cut(s)	88, 249, 430
PasI	CCCWGGG	1 cut(s)	193
PfeI	GAWTC	4 cut(s)	5, 17, 276, 668
PfoI	TCCNGGA	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	233
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PshBI	ATTAAT	1 cut(s)	659
Psp1406I	AACGTT	1 cut(s)	746
Psp6I	CCWGG	2 cut(s)	192, 311
PspGI	CCWGG	2 cut(s)	192, 311
PspN4I	GGNNCC	2 cut(s)	617, 775
PspPI	GGNCC	3 cut(s)	515, 530, 802
PsuI	RGATCY	4 cut(s)	333, 384, 647, 765
RsaI	GTAC	2 cut(s)	32, 437
RsaNI	GTAC	2 cut(s)	31, 436
RseI	CAYNNNNRTG	2 cut(s)	48, 284
SaqAI	TTAA	3 cut(s)	653, 659, 798
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	5 cut(s)	333, 384, 540, 647, 765
Sau96I	GGNCC	3 cut(s)	515, 530, 802
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	3 cut(s)	194, 313, 529
SduI	GDGCHC	2 cut(s)	420, 620
SetI	ASST	6 cut(s)	36, 417, 540, 749, 787, 818
SfaNI	GCATC	2 cut(s)	436, 552
SinI	GGWCC	1 cut(s)	515
SmiMI	CAYNNNNRTG	2 cut(s)	48, 284
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
Sse9I	AATT	3 cut(s)	162, 483, 625
SsiI	CCGC	2 cut(s)	477, 645
SspI	AATATT	1 cut(s)	657
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	3 cut(s)	192, 311, 527
StyI	CCWWGG	2 cut(s)	493, 611
TaaI	ACNGT	4 cut(s)	422, 447, 583, 683
TaiI	ACGT	2 cut(s)	417, 749
TaqI	TCGA	3 cut(s)	211, 623, 709
TasI	AATT	3 cut(s)	162, 483, 625
TfiI	GAWTC	4 cut(s)	5, 17, 276, 668
Tru1I	TTAA	3 cut(s)	653, 659, 798
Tru9I	TTAA	3 cut(s)	653, 659, 798
TscAI	CASTG	3 cut(s)	55, 427, 688
TseFI	GTSAC	2 cut(s)	50, 377
TseI	GCWGC	1 cut(s)	231
Tsp45I	GTSAC	2 cut(s)	50, 377
TspDTI	ATGAA	4 cut(s)	77, 105, 268, 337
TspRI	CASTG	3 cut(s)	55, 427, 688
Vha464I	CTTAAG	1 cut(s)	797
VneI	GTGCAC	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	515
VspI	ATTAAT	1 cut(s)	659
XapI	RAATTY	3 cut(s)	162, 483, 625
XspI	CTAG	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.