Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000249.1

Orthogroup ID

OG0006110

Physical Location & Seq

Genomic Coordinates Forward (+)

99757 .. 103823

Gene Structure 4067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000249.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgcagtatctcatcacaaatttcaacgactttcaactggcatgtctaggaagtttctttctccatgagagtgttttcttcttgtccggacttccttttatatatcttgagagggcaggatggttaagcaagtacaagattcaggcaaaaaataacagcccagcagctcaggagaaatgtatcactcgcctggtgctatatcatttttgtgtcaatctgccagttatgattgcttcctatcctgtcttcaagttcatggggatgcgaagtagtcttccattgccgtcctggaaagtggtttcaacacagatacttttctacttcatcctagaggatttcatattctattggggacatagggttctgcatacaaaatggttgtacaagcatgtgcacagcgttcatcacgaatatgctacaccttttggactgacttcggaatatgctcacccggctgagatattattccttggctttgctacaattgtcggtcctgccataactgggcctcatctgatcactctgtggttatggatggtactcagagtgctggagacagttgaggcacattgtggttaccatttcccatggagcctctccaacttcttacctttatatggaggtgctgattttcatgattatcatcaccgtttgctttataccaagtctggcaactattcatcaacttttgtttacatggacaggatatttggaactgacaccggttacagaaagttgaaagcactggagaaagctggagttgaagatgatggcgaggaaaagaaaagaaaagaagaaaggaaggcccagcctagaagaaaaaggaacatgcccaaaagcccgctgacccaagcccagaagctagctgacatcaaccctaggacccgcgccaagtcagcactgccacgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000254 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0030258 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0080065 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

303

Amino Acids

35.25

Weight (kDa)

9.44

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07420 AT1G07420 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390
fragaria_vesca	FvH4_3g37020 FvH4_3g37020
malus_domestica	MD03G1085200.v1.1 MD11G1093000.v1.1
prunus_persica	Prupe.6G068700_v2.0.a1
pyrus_communis	pycom03g06740 pycom11g07860
rosa_chinensis	RchiOBHm_Chr5g0066411
rosa_laevigata	RLG00000035861
rosa_multiflora	Rmu_ssc0000249.1_g000020
rosa_roxburghii	Rroxscaffold_1G00014470 Rroxscaffold_1G00014630
rosa_rugosa	Rorug05G0378100 Rorug05G0378200
rosa_samantha	Rh5AG436900 Rh5BG453100 Rh5CG475500 Rh5DG468300
rosa_wichuraiana	Rw5G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	888
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	2 cut(s)	842, 886
AcsI	RAATTY	1 cut(s)	19
AdeI	CACNNNGTG	2 cut(s)	525, 572
AfaI	GTAC	3 cut(s)	134, 383, 540
AfiI	CCNNNNNNNGG	2 cut(s)	504, 617
AgeI	ACCGGT	1 cut(s)	722
AgsI	TTSAA	6 cut(s)	25, 35, 250, 303, 739, 764
AjnI	CCWGG	2 cut(s)	189, 287
AloI	GAACNNNNNNTCC	2 cut(s)	345, 377
AluBI	AGCT	4 cut(s)	167, 755, 862, 866
AluI	AGCT	4 cut(s)	167, 755, 862, 866
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	548
Alw44I	GTGCAC	1 cut(s)	392
Aor13HI	TCCGGA	1 cut(s)	86
AoxI	GGCC	2 cut(s)	506, 804
ApaLI	GTGCAC	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	19
ArsI	GACNNNNNNTTYG	2 cut(s)	692, 724
AsiGI	ACCGGT	1 cut(s)	722
AspA2I	CCTAGG	1 cut(s)	878
AspLEI	GCGC	1 cut(s)	890
AspS9I	GGNCC	4 cut(s)	491, 506, 805, 882
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	440, 638
AsuNHI	GCTAGC	1 cut(s)	862
AvaII	GGWCC	2 cut(s)	491, 882
AvrII	CCTAGG	1 cut(s)	878
BaeGI	GKGCMC	1 cut(s)	396
BbsI	GAAGAC	2 cut(s)	238, 266
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	3 cut(s)	114, 529, 764
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	2 cut(s)	191, 289
BclI	TGATCA	1 cut(s)	516
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	5 cut(s)	47, 329, 813, 863, 879
BisI	GCNGC	1 cut(s)	165
BlnI	CCTAGG	1 cut(s)	878
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	3 cut(s)	191, 289, 452
Bme18I	GGWCC	2 cut(s)	491, 882
BmgT120I	GGNCC	4 cut(s)	491, 506, 805, 882
BmiI	GGNNCC	2 cut(s)	593, 884
BmrFI	CCNGG	3 cut(s)	191, 289, 452
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	252
BmtI	GCTAGC	1 cut(s)	866
BmuI	ACTGGG	1 cut(s)	513
BpiI	GAAGAC	2 cut(s)	238, 266
BpmI	CTGGAG	3 cut(s)	572, 767, 777
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	452
BsaBI	GATNNNNATC	1 cut(s)	642
BsaJI	CCNNGG	3 cut(s)	469, 587, 878
BsaWI	WCCGGW	2 cut(s)	86, 722
Bsc4I	CCNNNNNNNGG	2 cut(s)	504, 617
Bse118I	RCCGGY	1 cut(s)	722
Bse1I	ACTGG	4 cut(s)	42, 221, 508, 750
Bse3DI	GCAATG	1 cut(s)	278
Bse8I	GATNNNNATC	1 cut(s)	642
BseAI	TCCGGA	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	191, 289
BseDI	CCNNGG	3 cut(s)	469, 587, 878
BseGI	GGATG	4 cut(s)	125, 267, 324, 540
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	2 cut(s)	504, 617
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	3 cut(s)	182, 447, 556
BseNI	ACTGG	4 cut(s)	42, 221, 508, 750
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	176
BseYI	CCCAGC	2 cut(s)	160, 807
Bsh1236I	CGCG	1 cut(s)	888
BshFI	GGCC	2 cut(s)	508, 806
BshTI	ACCGGT	1 cut(s)	722
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	3 cut(s)	87, 452, 723
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	504, 617
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	508, 806
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp13I	TCCGGA	1 cut(s)	86
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	516
Bsp19I	CCATGG	1 cut(s)	587
BspACI	CCGC	2 cut(s)	842, 886
BspANI	GGCC	2 cut(s)	508, 806
BspCNI	CTCAG	3 cut(s)	181, 448, 555
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	888
BspHI	TCATGA	1 cut(s)	634
BspLI	GGNNCC	2 cut(s)	593, 884
BspOI	GCTAGC	1 cut(s)	866
BsrDI	GCAATG	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	722
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	4 cut(s)	42, 221, 508, 750
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	3 cut(s)	469, 587, 878
BssMI	GATC	1 cut(s)	516
BssT1I	CCWWGG	3 cut(s)	469, 587, 878
Bst2UI	CCWGG	2 cut(s)	191, 289
Bst4CI	ACNGT	2 cut(s)	559, 650
BstAUI	TGTACA	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	842, 864
BstDEI	CTNAG	3 cut(s)	168, 456, 542
BstDSI	CCRYGG	1 cut(s)	587
BstEII	GGTNACC	1 cut(s)	575
BstF5I	GGATG	4 cut(s)	125, 267, 324, 540
BstFNI	CGCG	1 cut(s)	888
BstHHI	GCGC	1 cut(s)	890
BstKTI	GATC	1 cut(s)	519
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	1 cut(s)	516
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 896
BstNI	CCWGG	2 cut(s)	191, 289
BstNSI	RCATGY	3 cut(s)	45, 392, 832
BstPI	GGTNACC	1 cut(s)	575
BstSCI	CCNGG	3 cut(s)	189, 287, 450
BstSLI	GKGCMC	1 cut(s)	396
BstUI	CGCG	1 cut(s)	888
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	2 cut(s)	238, 266
BsuRI	GGCC	2 cut(s)	508, 806
BtgI	CCRYGG	1 cut(s)	587
BtsCI	GGATG	4 cut(s)	125, 267, 324, 540
BtsI	GCAGTG	1 cut(s)	899
BtsIMutI	CAGTG	2 cut(s)	743, 899
Cac8I	GCNNGC	2 cut(s)	842, 864
CciI	TCATGA	1 cut(s)	634
CfoI	GCGC	1 cut(s)	890
Cfr10I	RCCGGY	1 cut(s)	722
Cfr13I	GGNCC	4 cut(s)	491, 506, 805, 882
Csp6I	GTAC	3 cut(s)	133, 382, 539
CspAI	ACCGGT	1 cut(s)	722
CviAII	CATG	8 cut(s)	42, 65, 256, 389, 588, 635, 697, 829
CviQI	GTAC	3 cut(s)	133, 382, 539
DdeI	CTNAG	3 cut(s)	168, 456, 542
DpnI	GATC	1 cut(s)	518
DpnII	GATC	1 cut(s)	516
DraIII	CACNNNGTG	2 cut(s)	525, 572
Eco130I	CCWWGG	3 cut(s)	469, 587, 878
Eco47I	GGWCC	2 cut(s)	491, 882
Eco91I	GGTNACC	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	882
EcoO65I	GGTNACC	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	189, 287
EcoT14I	CCWWGG	3 cut(s)	469, 587, 878
ErhI	CCWWGG	3 cut(s)	469, 587, 878
FaeI	CATG	8 cut(s)	45, 68, 259, 392, 591, 638, 700, 832
FaqI	GGGAC	1 cut(s)	366
FatI	CATG	8 cut(s)	41, 64, 255, 388, 587, 634, 696, 828
FauI	CCCGC	2 cut(s)	849, 893
FbaI	TGATCA	1 cut(s)	516
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	4 cut(s)	132, 274, 311, 547
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	5 cut(s)	47, 329, 813, 863, 879
GlaI	GCGC	1 cut(s)	889
GluI	GCNGC	1 cut(s)	165
GsaI	CCCAGC	2 cut(s)	164, 811
GsuI	CTGGAG	3 cut(s)	572, 767, 777
HaeIII	GGCC	2 cut(s)	508, 806
HapII	CCGG	3 cut(s)	87, 452, 723
HhaI	GCGC	1 cut(s)	890
Hin1II	CATG	8 cut(s)	45, 68, 259, 392, 591, 638, 700, 832
Hin6I	GCGC	1 cut(s)	888
HinP1I	GCGC	1 cut(s)	888
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	3 cut(s)	87, 452, 723
HphI	GGTGA	2 cut(s)	440, 638
Hpy166II	GTNNAC	2 cut(s)	394, 694
Hpy188I	TCNGA	3 cut(s)	439, 516, 545
Hpy188III	TCNNGA	5 cut(s)	87, 107, 170, 407, 635
Hpy8I	GTNNAC	2 cut(s)	394, 694
HpyAV	CCTTC	1 cut(s)	796
HpyCH4III	ACNGT	2 cut(s)	559, 650
HpyCH4IV	ACGT	1 cut(s)	907
HpyCH4V	TGCA	3 cut(s)	4, 367, 394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 896
HpyF3I	CTNAG	3 cut(s)	168, 456, 542
HpySE526I	ACGT	1 cut(s)	907
Hsp92II	CATG	8 cut(s)	45, 68, 259, 392, 591, 638, 700, 832
HspAI	GCGC	1 cut(s)	888
Kpn2I	TCCGGA	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	516
Kzo9I	GATC	1 cut(s)	516
LmnI	GCTCC	1 cut(s)	591
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	5 cut(s)	47, 329, 813, 863, 879
MaeII	ACGT	1 cut(s)	907
MaeIII	GTNAC	2 cut(s)	575, 725
MalI	GATC	1 cut(s)	518
MboI	GATC	1 cut(s)	516
MboII	GAAGA	6 cut(s)	70, 238, 266, 776, 806, 828
MfeI	CAATTG	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	2 cut(s)	19, 483
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	7 cut(s)	105, 325, 519, 556, 605, 614, 769
MroI	TCCGGA	1 cut(s)	86
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	4 cut(s)	69, 207, 260, 411
MspA1I	CMGCKG	1 cut(s)	844
MspI	CCGG	3 cut(s)	87, 452, 723
MspR9I	CCNGG	3 cut(s)	191, 289, 452
MunI	CAATTG	1 cut(s)	483
MvaI	CCWGG	2 cut(s)	191, 289
MvnI	CGCG	1 cut(s)	888
MwoI	GCNNNNNNNGC	2 cut(s)	452, 896
NciI	CCSGG	1 cut(s)	452
NcoI	CCATGG	1 cut(s)	587
NdeII	GATC	1 cut(s)	516
NheI	GCTAGC	1 cut(s)	862
NlaIII	CATG	8 cut(s)	45, 68, 259, 392, 591, 638, 700, 832
NlaIV	GGNNCC	2 cut(s)	593, 884
NspI	RCATGY	3 cut(s)	45, 392, 832
PagI	TCATGA	1 cut(s)	634
PfeI	GAWTC	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	287
PinAI	ACCGGT	1 cut(s)	722
PkrI	GCNGC	1 cut(s)	166
PpuMI	RGGWCCY	1 cut(s)	882
Psp5II	RGGWCCY	1 cut(s)	882
Psp6I	CCWGG	2 cut(s)	189, 287
PspEI	GGTNACC	1 cut(s)	575
PspFI	CCCAGC	2 cut(s)	160, 807
PspGI	CCWGG	2 cut(s)	189, 287
PspN4I	GGNNCC	2 cut(s)	593, 884
PspPI	GGNCC	4 cut(s)	491, 506, 805, 882
PspPPI	RGGWCCY	1 cut(s)	882
RsaI	GTAC	3 cut(s)	134, 383, 540
RsaNI	GTAC	3 cut(s)	133, 382, 539
RseI	CAYNNNNRTG	4 cut(s)	69, 207, 260, 411
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	516
Sau96I	GGNCC	4 cut(s)	491, 506, 805, 882
ScrFI	CCNGG	3 cut(s)	191, 289, 452
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	8 cut(s)	169, 424, 613, 625, 757, 864, 868, 910
SfaNI	GCATC	1 cut(s)	252
SinI	GGWCC	2 cut(s)	491, 882
SmiMI	CAYNNNNRTG	4 cut(s)	69, 207, 260, 411
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	19, 483
SsiI	CCGC	2 cut(s)	842, 886
SspMI	CTAG	5 cut(s)	47, 329, 813, 863, 879
StyD4I	CCNGG	3 cut(s)	189, 287, 450
StyI	CCWWGG	3 cut(s)	469, 587, 878
TaaI	ACNGT	2 cut(s)	559, 650
TaiI	ACGT	1 cut(s)	910
TaqII	GACCGA	1 cut(s)	479
TasI	AATT	2 cut(s)	19, 483
TatI	WGTACW	2 cut(s)	132, 381
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	2 cut(s)	750, 906
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	6 cut(s)	244, 313, 328, 392, 623, 669
TspRI	CASTG	2 cut(s)	750, 906
VneI	GTGCAC	1 cut(s)	392
VpaK11BI	GGWCC	2 cut(s)	491, 882
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	3 cut(s)	45, 392, 832
XcmI	CCANNNNNNNNNTGG	1 cut(s)	285
XmaJI	CCTAGG	1 cut(s)	878
XspI	CTAG	5 cut(s)	47, 329, 813, 863, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.