Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006110

Physical Location & Seq

Genomic Coordinates Reverse (-)

31762133 .. 31766138

Gene Structure 4006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g37020.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTTCCATTGTTGAATCTGGCTGGCGGTATCTCATCACAAACTTCAACGACTTTCAACTGGCATGCCTAGGAAGTTTCTTTCTCCATGAGAGTGTTTTCTTCTTATCTGGACTTCCTTTTATATATCTTGAGAGGGCAGGATGGTTAAGCAAGTACAAGATTCAGGCAAAAAGTAACAGCCCAGCAGCTCAGGAGAAATGTATCACTCGCCTACTGCTATATCATTTTTGTGTCAATCTGCCAGTTATGATTGCTTCCTATCCTGTCTTCAAATTCATGGGGATGCAAAGTAGTCTTCCATTGCCGTCCTGGAAAGTGGTTTCAACGCAGATAATTTTCTACTTCATCCTGGAGGATTTCGTATTCTATTGGGGACATAGGGTTCTACATACAAAATGGTTGTACAAGCATGTGCACAGTGTTCATCACGAATATGCTACACCTTTCGGACTGACTTCTGAATATGCTCACCCAGCTGAGATATTATTCCTTGGCTTTGCTACAATTCTTGGTCCTGCCATAACAGGGCCTCATTTGATCACTCTGTGGTTATGGATGGTACTCAGAGTGCTGGAGACGGTTGAGGCACATTGTGGTTACCATTTCCCATGGAGTTTCTCCAACTTCGTACCTCTATATGGAGGTGCTGATTTTCATGACTATCATCACCGTTTGCTTTATACCAAGTCTGGCAACTATTCATCAACTTTTATCTACATGGACAGGATATTTGGAACCGACACTGGTTACAGAAAGTTGAAAGCACTGGAGAGAGCTGGAGTTGAAGATGATGGCGAGGGTACATGCTATGCCAAGGGTACATCCAATGGCAAGGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000254 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0030258 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0080065 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

282

Amino Acids

32.37

Weight (kDa)

7.25

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	158 - 292	3.1e-27	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07420 AT1G07420 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390
fragaria_vesca	FvH4_3g37020 FvH4_3g37020
malus_domestica	MD03G1085200.v1.1 MD11G1093000.v1.1
prunus_persica	Prupe.6G068700_v2.0.a1
pyrus_communis	pycom03g06740 pycom11g07860
rosa_chinensis	RchiOBHm_Chr5g0066411
rosa_laevigata	RLG00000035861
rosa_multiflora	Rmu_ssc0000249.1_g000020
rosa_roxburghii	Rroxscaffold_1G00014470 Rroxscaffold_1G00014630
rosa_rugosa	Rorug05G0378100 Rorug05G0378200
rosa_samantha	Rh5AG436900 Rh5BG453100 Rh5CG475500 Rh5DG468300
rosa_wichuraiana	Rw5G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	275
AdeI	CACNNNGTG	2 cut(s)	549, 596
AfaI	GTAC	6 cut(s)	158, 407, 564, 633, 805, 823
AfiI	CCNNNNNNNGG	2 cut(s)	528, 641
AgsI	TTSAA	7 cut(s)	17, 49, 59, 274, 327, 763, 788
AjnI	CCWGG	2 cut(s)	311, 351
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AluBI	AGCT	3 cut(s)	191, 479, 779
AluI	AGCT	3 cut(s)	191, 479, 779
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	572
Alw44I	GTGCAC	1 cut(s)	416
AoxI	GGCC	1 cut(s)	530
ApaLI	GTGCAC	1 cut(s)	416
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	275
ArsI	GACNNNNNNTTYG	2 cut(s)	716, 748
AspA2I	CCTAGG	1 cut(s)	70
AspS9I	GGNCC	2 cut(s)	515, 530
AsuHPI	GGTGA	2 cut(s)	464, 662
AvaII	GGWCC	1 cut(s)	515
AvrII	CCTAGG	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	420
BbsI	GAAGAC	2 cut(s)	262, 290
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	3 cut(s)	138, 553, 788
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	2 cut(s)	313, 353
BclI	TGATCA	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	1 cut(s)	71
BisI	GCNGC	1 cut(s)	189
BlnI	CCTAGG	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	313, 353
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	2 cut(s)	515, 530
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	2 cut(s)	313, 353
BmsI	GCATC	1 cut(s)	276
BpiI	GAAGAC	2 cut(s)	262, 290
BpmI	CTGGAG	4 cut(s)	374, 596, 791, 801
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	70, 493, 611, 816
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 641
Bse1I	ACTGG	4 cut(s)	66, 245, 751, 774
Bse3DI	GCAATG	1 cut(s)	302
BseBI	CCWGG	2 cut(s)	313, 353
BseDI	CCNNGG	4 cut(s)	70, 493, 611, 816
BseGI	GGATG	5 cut(s)	149, 291, 348, 564, 824
BseLI	CCNNNNNNNGG	2 cut(s)	528, 641
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	3 cut(s)	206, 471, 580
BseNI	ACTGG	4 cut(s)	66, 245, 751, 774
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	1 cut(s)	200
BseYI	CCCAGC	2 cut(s)	184, 475
BshFI	GGCC	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	528, 641
BsmAI	GTCTC	1 cut(s)	572
BsmBI	CGTCTC	1 cut(s)	572
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp1407I	TGTACA	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	540
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	532
BspCNI	CTCAG	3 cut(s)	205, 472, 579
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	739
BsrDI	GCAATG	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	405
BsrI	ACTGG	4 cut(s)	66, 245, 751, 774
BssECI	CCNNGG	4 cut(s)	70, 493, 611, 816
BssMI	GATC	1 cut(s)	540
BssT1I	CCWWGG	4 cut(s)	70, 493, 611, 816
Bst2UI	CCWGG	2 cut(s)	313, 353
Bst4CI	ACNGT	3 cut(s)	422, 583, 674
BstAUI	TGTACA	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	26, 67
BstDEI	CTNAG	3 cut(s)	192, 480, 566
BstDSI	CCRYGG	1 cut(s)	611
BstEII	GGTNACC	1 cut(s)	599
BstF5I	GGATG	5 cut(s)	149, 291, 348, 564, 824
BstKTI	GATC	1 cut(s)	543
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	1 cut(s)	540
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNI	CCWGG	2 cut(s)	313, 353
BstNSI	RCATGY	3 cut(s)	69, 416, 810
BstPI	GGTNACC	1 cut(s)	599
BstSCI	CCNGG	2 cut(s)	311, 351
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	2 cut(s)	262, 290
BsuRI	GGCC	1 cut(s)	532
BtgI	CCRYGG	1 cut(s)	611
BtsCI	GGATG	5 cut(s)	149, 291, 348, 564, 824
BtsIMutI	CAGTG	3 cut(s)	427, 744, 767
Cac8I	GCNNGC	2 cut(s)	26, 67
CciI	TCATGA	1 cut(s)	658
Cfr13I	GGNCC	2 cut(s)	515, 530
Csp6I	GTAC	6 cut(s)	157, 406, 563, 632, 804, 822
CviAII	CATG	8 cut(s)	66, 89, 280, 413, 612, 659, 721, 807
CviJI	RGCY	8 cut(s)	5, 24, 183, 191, 479, 498, 532, 779
CviKI_1	RGCY	8 cut(s)	5, 24, 183, 191, 479, 498, 532, 779
CviQI	GTAC	6 cut(s)	157, 406, 563, 632, 804, 822
DdeI	CTNAG	3 cut(s)	192, 480, 566
DpnI	GATC	1 cut(s)	542
DpnII	GATC	1 cut(s)	540
DraIII	CACNNNGTG	2 cut(s)	549, 596
Eco130I	CCWWGG	4 cut(s)	70, 493, 611, 816
Eco47I	GGWCC	1 cut(s)	515
Eco91I	GGTNACC	1 cut(s)	599
EcoO109I	RGGNCCY	1 cut(s)	530
EcoO65I	GGTNACC	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	311, 351
EcoT14I	CCWWGG	4 cut(s)	70, 493, 611, 816
ErhI	CCWWGG	4 cut(s)	70, 493, 611, 816
Esp3I	CGTCTC	1 cut(s)	572
FaeI	CATG	8 cut(s)	69, 92, 283, 416, 615, 662, 724, 810
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	8 cut(s)	65, 88, 279, 412, 611, 658, 720, 806
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	5 cut(s)	156, 298, 335, 571, 811
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	2 cut(s)	188, 479
GsuI	CTGGAG	4 cut(s)	374, 596, 791, 801
HaeIII	GGCC	1 cut(s)	532
Hin1II	CATG	8 cut(s)	69, 92, 283, 416, 615, 662, 724, 810
HinfI	GANTC	2 cut(s)	17, 163
HphI	GGTGA	2 cut(s)	464, 662
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	3 cut(s)	452, 463, 569
Hpy188III	TCNNGA	5 cut(s)	111, 131, 194, 431, 659
Hpy8I	GTNNAC	1 cut(s)	418
HpyCH4III	ACNGT	3 cut(s)	422, 583, 674
HpyCH4V	TGCA	2 cut(s)	289, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	3 cut(s)	192, 480, 566
Hsp92II	CATG	8 cut(s)	69, 92, 283, 416, 615, 662, 724, 810
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	1 cut(s)	540
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	3 cut(s)	176, 599, 749
MalI	GATC	1 cut(s)	542
MboI	GATC	1 cut(s)	540
MboII	GAAGA	4 cut(s)	94, 262, 290, 800
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	3 cut(s)	275, 336, 507
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	7 cut(s)	129, 349, 543, 580, 638, 645, 793
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	4 cut(s)	93, 231, 284, 435
MspA1I	CMGCKG	1 cut(s)	479
MspR9I	CCNGG	2 cut(s)	313, 353
MvaI	CCWGG	2 cut(s)	313, 353
MwoI	GCNNNNNNNGC	1 cut(s)	476
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	1 cut(s)	540
NlaIII	CATG	8 cut(s)	69, 92, 283, 416, 615, 662, 724, 810
NlaIV	GGNNCC	1 cut(s)	739
NspI	RCATGY	3 cut(s)	69, 416, 810
PaeI	GCATGC	1 cut(s)	69
PagI	TCATGA	1 cut(s)	658
PfeI	GAWTC	2 cut(s)	17, 163
PfoI	TCCNGGA	2 cut(s)	311, 351
PkrI	GCNGC	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	311, 351
PspEI	GGTNACC	1 cut(s)	599
PspFI	CCCAGC	2 cut(s)	184, 475
PspGI	CCWGG	2 cut(s)	311, 351
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	2 cut(s)	515, 530
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	6 cut(s)	158, 407, 564, 633, 805, 823
RsaNI	GTAC	6 cut(s)	157, 406, 563, 632, 804, 822
RseI	CAYNNNNRTG	4 cut(s)	93, 231, 284, 435
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	540
Sau96I	GGNCC	2 cut(s)	515, 530
ScrFI	CCNGG	2 cut(s)	313, 353
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	6 cut(s)	193, 448, 481, 637, 649, 781
SfaNI	GCATC	1 cut(s)	276
SinI	GGWCC	1 cut(s)	515
SmiMI	CAYNNNNRTG	4 cut(s)	93, 231, 284, 435
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SphI	GCATGC	1 cut(s)	69
Sse9I	AATT	3 cut(s)	275, 336, 507
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	311, 351
StyI	CCWWGG	4 cut(s)	70, 493, 611, 816
TaaI	ACNGT	3 cut(s)	422, 583, 674
TasI	AATT	3 cut(s)	275, 336, 507
TatI	WGTACW	2 cut(s)	156, 405
TfiI	GAWTC	2 cut(s)	17, 163
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	3 cut(s)	427, 751, 774
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	5 cut(s)	268, 337, 416, 647, 693
TspRI	CASTG	3 cut(s)	427, 751, 774
VneI	GTGCAC	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	3 cut(s)	69, 416, 810
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309
XmaJI	CCTAGG	1 cut(s)	70
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.