Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006110

Physical Location & Seq

Genomic Coordinates Reverse (-)

72727159 .. 72731097

Gene Structure 3939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035861

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAAGGAAATTGGGCACACAGAAAGCACCAGAAGACCACACAGTAGAGGCAGACGTGCACGGTCTGACTCCTCTCGTCAGCATCTTCTCAATTTGCTATATAAACAAAAGGCTCCAAATCATAAAGACAGTCTGTACCGCTCTCACATCTCGTGCGGTGTTTACTGGGACTCTCACACCTTCTCTTATTACAGAGGAGAGAGGACACCACTTACATCAGCAGCTCCTGCTTCCTCCCAAGCTTTCATGGCTTCCATTGTTGAATCTGGCTGGCGGTATCTCATCACAAATTTCAATGACTTTCAACTGGCATGTCTAGGAAGTTTCTTTCTCCATGAGAGTGTTTTCTTCTTGTCCGGACTTCCTTTTATATATCTTGAGAGGGCAGGATGGTTAAGCAAGTACAAGATTCAGGCAAAAAATAACAGCCCAGCAGCTCAGGAGAAATGTATAACTCGCCTGGTGCTATATCATTTTTGTGTCAATCTGCCAGTTATGATTGCTTCCTATCCTGTCTTCAAATTCATGGGGATGCGAAGTAGTCTTCCATTGCCGTCCTGGAAAGTGGTTTCAACACAGATAATTTTCTACTTCATCCTAGAGGATTTCATATTCTATTGGGGACATAGGGTTCTGCATACAAAATGGTTGTACAAGCATGTGCACAGCGTTCATCACGAATATGCTACACCTTTTGGACTGACTTCGGAATATGCTCACCCGGCTGAGATATTATTCCTTGGCTTTGCTACAATTGTCGGTCCTGCCATAACTGGGCCTCATCTGATCACTCTGTGGTTATGGATGGTACTCAGAGTGCTGGAGACGGTTGAGGCACATTGTGGTTACCATTTCCCATGGAGCCTCTCCAACTTCTTACCTTTATATGGAGGTGCTGATTTTCATGATTATCATCACCGTTTGCTATATACCAAGTCTGGCAACTATTCATCAACTTTTGTTTACATGGACAGGATATTTGGAACCGACACCGGTTACAGAAAGTTGAAAGCACTGGAGAAAGCTGGAGTTGAAGATGATGGCGAGGGTACGTGCTATGGCAAGGGTACATGCAACGGCAAGGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000254 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0030258 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0080065 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

364

Amino Acids

41.81

Weight (kDa)

9.06

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	195 - 329	2.3e-27	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07420 AT1G07420 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390
fragaria_vesca	FvH4_3g37020 FvH4_3g37020
malus_domestica	MD03G1085200.v1.1 MD11G1093000.v1.1
prunus_persica	Prupe.6G068700_v2.0.a1
pyrus_communis	pycom03g06740 pycom11g07860
rosa_chinensis	RchiOBHm_Chr5g0066411
rosa_laevigata	RLG00000035861
rosa_multiflora	Rmu_ssc0000249.1_g000020
rosa_roxburghii	Rroxscaffold_1G00014470 Rroxscaffold_1G00014630
rosa_rugosa	Rorug05G0378100 Rorug05G0378200
rosa_samantha	Rh5AG436900 Rh5BG453100 Rh5CG475500 Rh5DG468300
rosa_wichuraiana	Rw5G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	141
AccIII	TCCGGA	1 cut(s)	356
AciI	CCGC	3 cut(s)	139, 156, 274
AcsI	RAATTY	2 cut(s)	289, 521
AdeI	CACNNNGTG	2 cut(s)	795, 842
AfaI	GTAC	6 cut(s)	137, 404, 653, 810, 1051, 1069
AfiI	CCNNNNNNNGG	2 cut(s)	774, 887
AgeI	ACCGGT	1 cut(s)	992
AgsI	TTSAA	7 cut(s)	263, 295, 305, 520, 573, 1009, 1034
AjiI	CACGTC	1 cut(s)	56
AjnI	CCWGG	2 cut(s)	459, 557
AloI	GAACNNNNNNTCC	2 cut(s)	615, 647
AluBI	AGCT	4 cut(s)	224, 242, 437, 1025
AluI	AGCT	4 cut(s)	224, 242, 437, 1025
Alw21I	GWGCWC	2 cut(s)	61, 666
Alw26I	GTCTC	1 cut(s)	818
Alw44I	GTGCAC	2 cut(s)	57, 662
AlwNI	CAGNNNCTG	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	356
AoxI	GGCC	1 cut(s)	776
ApaLI	GTGCAC	2 cut(s)	57, 662
ApeKI	GCWGC	2 cut(s)	221, 434
ApoI	RAATTY	2 cut(s)	289, 521
ArsI	GACNNNNNNTTYG	2 cut(s)	962, 994
AsiGI	ACCGGT	1 cut(s)	992
AspS9I	GGNCC	2 cut(s)	761, 776
AsuC2I	CCSGG	1 cut(s)	722
AsuHPI	GGTGA	2 cut(s)	710, 908
AvaII	GGWCC	1 cut(s)	761
BaeGI	GKGCMC	3 cut(s)	18, 61, 666
BauI	CACGAG	1 cut(s)	151
BbsI	GAAGAC	3 cut(s)	40, 508, 536
Bbv12I	GWGCWC	2 cut(s)	61, 666
BbvI	GCAGC	2 cut(s)	233, 446
BccI	CCATC	3 cut(s)	384, 799, 1034
BceAI	ACGGC	1 cut(s)	538
BciT130I	CCWGG	2 cut(s)	461, 559
BclI	TGATCA	1 cut(s)	786
BcnI	CCSGG	1 cut(s)	722
BcoDI	GTCTC	1 cut(s)	818
BfaI	CTAG	2 cut(s)	317, 599
BisI	GCNGC	2 cut(s)	222, 435
BlsI	GCNGC	2 cut(s)	223, 436
Bme1390I	CCNGG	3 cut(s)	461, 559, 722
Bme18I	GGWCC	1 cut(s)	761
BmgBI	CACGTC	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	761, 776
BmiI	GGNNCC	3 cut(s)	114, 863, 985
BmrFI	CCNGG	3 cut(s)	461, 559, 722
BmrI	ACTGGG	2 cut(s)	175, 783
BmsI	GCATC	2 cut(s)	91, 522
BmuI	ACTGGG	2 cut(s)	175, 783
BpiI	GAAGAC	3 cut(s)	40, 508, 536
BpmI	CTGGAG	3 cut(s)	842, 1037, 1047
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	722
BsaAI	YACGTR	1 cut(s)	1053
BsaBI	GATNNNNATC	1 cut(s)	912
BsaJI	CCNNGG	2 cut(s)	739, 857
BsaWI	WCCGGW	2 cut(s)	356, 992
Bsc4I	CCNNNNNNNGG	2 cut(s)	774, 887
Bse118I	RCCGGY	1 cut(s)	992
Bse1I	ACTGG	5 cut(s)	170, 312, 491, 778, 1020
Bse3DI	GCAATG	1 cut(s)	548
Bse8I	GATNNNNATC	1 cut(s)	912
BseAI	TCCGGA	1 cut(s)	356
BseBI	CCWGG	2 cut(s)	461, 559
BseDI	CCNNGG	2 cut(s)	739, 857
BseGI	GGATG	4 cut(s)	395, 537, 594, 810
BseJI	GATNNNNATC	1 cut(s)	912
BseLI	CCNNNNNNNGG	2 cut(s)	774, 887
BseMI	GCAATG	1 cut(s)	548
BseMII	CTCAG	3 cut(s)	452, 717, 826
BseNI	ACTGG	5 cut(s)	170, 312, 491, 778, 1020
BseRI	GAGGAG	2 cut(s)	61, 210
BseSI	GKGCMC	3 cut(s)	18, 61, 666
BseXI	GCAGC	2 cut(s)	233, 446
BseYI	CCCAGC	1 cut(s)	430
BshFI	GGCC	1 cut(s)	778
BshTI	ACCGGT	1 cut(s)	992
BsiHKAI	GWGCWC	2 cut(s)	61, 666
BsiSI	CCGG	3 cut(s)	357, 722, 993
BslFI	GGGAC	2 cut(s)	182, 636
BslI	CCNNNNNNNGG	2 cut(s)	774, 887
BsmAI	GTCTC	1 cut(s)	818
BsmBI	CGTCTC	1 cut(s)	818
BsmFI	GGGAC	2 cut(s)	182, 636
BsnI	GGCC	1 cut(s)	778
Bsp1286I	GDGCHC	3 cut(s)	18, 61, 666
Bsp13I	TCCGGA	1 cut(s)	356
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	1 cut(s)	786
Bsp19I	CCATGG	1 cut(s)	857
BspACI	CCGC	3 cut(s)	139, 156, 274
BspANI	GGCC	1 cut(s)	778
BspCNI	CTCAG	3 cut(s)	451, 718, 825
BspEI	TCCGGA	1 cut(s)	356
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	3 cut(s)	114, 863, 985
BsrBI	CCGCTC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	992
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	5 cut(s)	170, 312, 491, 778, 1020
BssAI	RCCGGY	1 cut(s)	992
BssECI	CCNNGG	2 cut(s)	739, 857
BssMI	GATC	1 cut(s)	786
BssSI	CACGAG	1 cut(s)	151
BssT1I	CCWWGG	2 cut(s)	739, 857
Bst2BI	CACGAG	1 cut(s)	151
Bst2UI	CCWGG	2 cut(s)	461, 559
Bst4CI	ACNGT	5 cut(s)	44, 63, 131, 829, 920
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	651
BstBAI	YACGTR	1 cut(s)	1053
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	3 cut(s)	438, 726, 812
BstDSI	CCRYGG	1 cut(s)	857
BstEII	GGTNACC	1 cut(s)	845
BstF5I	GGATG	4 cut(s)	395, 537, 594, 810
BstKTI	GATC	1 cut(s)	789
BstMAI	GTCTC	1 cut(s)	818
BstMBI	GATC	1 cut(s)	786
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 248, 722
BstNI	CCWGG	2 cut(s)	461, 559
BstNSI	RCATGY	3 cut(s)	315, 662, 1074
BstPI	GGTNACC	1 cut(s)	845
BstSCI	CCNGG	3 cut(s)	459, 557, 720
BstSLI	GKGCMC	3 cut(s)	18, 61, 666
BstV1I	GCAGC	2 cut(s)	233, 446
BstV2I	GAAGAC	3 cut(s)	40, 508, 536
BsuRI	GGCC	1 cut(s)	778
BtgI	CCRYGG	1 cut(s)	857
BtrI	CACGTC	1 cut(s)	56
BtsCI	GGATG	4 cut(s)	395, 537, 594, 810
BtsIMutI	CAGTG	1 cut(s)	1013
Cac8I	GCNNGC	1 cut(s)	272
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	904
Cfr10I	RCCGGY	1 cut(s)	992
Cfr13I	GGNCC	2 cut(s)	761, 776
Csp6I	GTAC	6 cut(s)	136, 403, 652, 809, 1050, 1068
CspAI	ACCGGT	1 cut(s)	992
CviAII	CATG	9 cut(s)	247, 312, 335, 526, 659, 858, 905, 967, 1071
CviQI	GTAC	6 cut(s)	136, 403, 652, 809, 1050, 1068
DdeI	CTNAG	3 cut(s)	438, 726, 812
DpnI	GATC	1 cut(s)	788
DpnII	GATC	1 cut(s)	786
DraIII	CACNNNGTG	2 cut(s)	795, 842
Eco130I	CCWWGG	2 cut(s)	739, 857
Eco47I	GGWCC	1 cut(s)	761
Eco91I	GGTNACC	1 cut(s)	845
EcoO65I	GGTNACC	1 cut(s)	845
EcoRII	CCWGG	2 cut(s)	459, 557
EcoT14I	CCWWGG	2 cut(s)	739, 857
ErhI	CCWWGG	2 cut(s)	739, 857
Esp3I	CGTCTC	1 cut(s)	818
FaeI	CATG	9 cut(s)	250, 315, 338, 529, 662, 861, 908, 970, 1074
FaqI	GGGAC	2 cut(s)	182, 636
FatI	CATG	9 cut(s)	246, 311, 334, 525, 658, 857, 904, 966, 1070
FbaI	TGATCA	1 cut(s)	786
Fnu4HI	GCNGC	2 cut(s)	222, 435
FokI	GGATG	4 cut(s)	402, 544, 581, 817
Fsp4HI	GCNGC	2 cut(s)	222, 435
FspBI	CTAG	2 cut(s)	317, 599
GluI	GCNGC	2 cut(s)	222, 435
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	3 cut(s)	842, 1037, 1047
HaeIII	GGCC	1 cut(s)	778
HapII	CCGG	3 cut(s)	357, 722, 993
Hin1II	CATG	9 cut(s)	250, 315, 338, 529, 662, 861, 908, 970, 1074
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	4 cut(s)	68, 170, 263, 409
HpaII	CCGG	3 cut(s)	357, 722, 993
HphI	GGTGA	2 cut(s)	710, 908
Hpy166II	GTNNAC	4 cut(s)	59, 163, 664, 964
Hpy188I	TCNGA	4 cut(s)	67, 709, 786, 815
Hpy188III	TCNNGA	5 cut(s)	357, 377, 440, 677, 905
Hpy8I	GTNNAC	4 cut(s)	59, 163, 664, 964
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	5 cut(s)	44, 63, 131, 829, 920
HpyCH4IV	ACGT	2 cut(s)	55, 1052
HpyCH4V	TGCA	4 cut(s)	59, 637, 664, 1074
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 248, 722
HpyF3I	CTNAG	3 cut(s)	438, 726, 812
HpySE526I	ACGT	2 cut(s)	55, 1052
Hsp92II	CATG	9 cut(s)	250, 315, 338, 529, 662, 861, 908, 970, 1074
Kpn2I	TCCGGA	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	786
Kzo9I	GATC	1 cut(s)	786
LmnI	GCTCC	3 cut(s)	118, 229, 861
Lsp1109I	GCAGC	2 cut(s)	233, 446
LweI	GCATC	2 cut(s)	91, 522
MaeI	CTAG	2 cut(s)	317, 599
MaeII	ACGT	2 cut(s)	55, 1052
MaeIII	GTNAC	2 cut(s)	845, 995
MalI	GATC	1 cut(s)	788
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	1 cut(s)	786
MboII	GAAGA	6 cut(s)	45, 77, 340, 508, 536, 1046
MfeI	CAATTG	1 cut(s)	753
MhlI	GDGCHC	3 cut(s)	18, 61, 666
MluCI	AATT	6 cut(s)	9, 91, 289, 521, 582, 753
MlyI	GAGTC	2 cut(s)	62, 164
MmeI	TCCRAC	1 cut(s)	894
MroI	TCCGGA	1 cut(s)	356
MseI	TTAA	1 cut(s)	395
MslI	CAYNNNNRTG	4 cut(s)	339, 477, 530, 681
MspI	CCGG	3 cut(s)	357, 722, 993
MspR9I	CCNGG	3 cut(s)	461, 559, 722
MunI	CAATTG	1 cut(s)	753
MvaI	CCWGG	2 cut(s)	461, 559
MwoI	GCNNNNNNNGC	3 cut(s)	227, 248, 722
NciI	CCSGG	1 cut(s)	722
NcoI	CCATGG	1 cut(s)	857
NdeII	GATC	1 cut(s)	786
NlaIII	CATG	9 cut(s)	250, 315, 338, 529, 662, 861, 908, 970, 1074
NlaIV	GGNNCC	3 cut(s)	114, 863, 985
NspI	RCATGY	3 cut(s)	315, 662, 1074
PagI	TCATGA	1 cut(s)	904
PfeI	GAWTC	2 cut(s)	263, 409
PfoI	TCCNGGA	1 cut(s)	557
PinAI	ACCGGT	1 cut(s)	992
PkrI	GCNGC	2 cut(s)	223, 436
PleI	GAGTC	2 cut(s)	62, 164
PpsI	GAGTC	2 cut(s)	62, 164
Ppu21I	YACGTR	1 cut(s)	1053
Psp6I	CCWGG	2 cut(s)	459, 557
PspEI	GGTNACC	1 cut(s)	845
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	2 cut(s)	459, 557
PspN4I	GGNNCC	3 cut(s)	114, 863, 985
PspPI	GGNCC	2 cut(s)	761, 776
PstNI	CAGNNNCTG	1 cut(s)	227
RsaI	GTAC	6 cut(s)	137, 404, 653, 810, 1051, 1069
RsaNI	GTAC	6 cut(s)	136, 403, 652, 809, 1050, 1068
RseI	CAYNNNNRTG	4 cut(s)	339, 477, 530, 681
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	2 cut(s)	222, 435
Sau3AI	GATC	1 cut(s)	786
Sau96I	GGNCC	2 cut(s)	761, 776
SchI	GAGTC	2 cut(s)	62, 164
ScrFI	CCNGG	3 cut(s)	461, 559, 722
SduI	GDGCHC	3 cut(s)	18, 61, 666
SfaNI	GCATC	2 cut(s)	91, 522
SinI	GGWCC	1 cut(s)	761
SmiMI	CAYNNNNRTG	4 cut(s)	339, 477, 530, 681
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	6 cut(s)	9, 91, 289, 521, 582, 753
SsiI	CCGC	3 cut(s)	139, 156, 274
SspMI	CTAG	2 cut(s)	317, 599
StyD4I	CCNGG	3 cut(s)	459, 557, 720
StyI	CCWWGG	2 cut(s)	739, 857
TaaI	ACNGT	5 cut(s)	44, 63, 131, 829, 920
TaiI	ACGT	2 cut(s)	58, 1055
TaqII	GACCGA	1 cut(s)	749
TasI	AATT	6 cut(s)	9, 91, 289, 521, 582, 753
TatI	WGTACW	2 cut(s)	402, 651
TfiI	GAWTC	2 cut(s)	263, 409
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	1 cut(s)	1020
TseI	GCWGC	2 cut(s)	221, 434
TspDTI	ATGAA	8 cut(s)	17, 235, 514, 583, 598, 662, 893, 939
TspRI	CASTG	1 cut(s)	1020
VneI	GTGCAC	2 cut(s)	57, 662
VpaK11BI	GGWCC	1 cut(s)	761
XapI	RAATTY	2 cut(s)	289, 521
XceI	RCATGY	3 cut(s)	315, 662, 1074
XcmI	CCANNNNNNNNNTGG	1 cut(s)	555
XspI	CTAG	2 cut(s)	317, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.