Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008925

Physical Location & Seq

Genomic Coordinates Reverse (-)

2428773 .. 2432091

Gene Structure 3319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGGTTGTTTCGGATGCAGTAAGAAATCGAGCAAACGATCCGAGACTAACAAAGATACTGTCATAAATAGAAAAATTGTCGGTGGTACTACGAGCGTTGCTAAGAGTGATAAGCGAGACGATCAGACTCAGCCCAGTTCAGATTCAACAAAAGTCAGTCCATATAGAGATGTAAACAATGAAGGAGGAGTTGGTAAGGAAGATCAGTTATCTTTGGATGTGAAGGGTTTGAATCTAAATGACCAAGTCACAGGGAAGAAAGCACAGACTTTTACTTTTCAAGAACTTGCAGAAGCTACGGGAAACTTTAGATCGGATTGTTTTCTTGGTGAAGGAGGTTTCGGAAAAGTTTTCAAGGGAACTATAGAGAAATTGGATCAGGTTGTTGCAATCAAGCAACTTGATCGTAATGGGGTTCAAGGAATCAGGGAATTTGTGGTTGAGGTATTGACTCTAAGTCTTGCTGACCATCCGAATCTTGTGAAGCTTATTGGGTTTTGTGCTGAGGGTGATCAGAGACTACTGGTGTACGAGTATATGCCGCAAGGATCCCTTGAAGATCATCTACATGTTCTCCCTTCTGGTAAAAAGCCTCTTGACTGGAACACCCGGATGAAAATAGCAGCTGGTGCAGCAAGAGGTTTAGAGTATCTGCATGACAGAATGACGCCCCCTGTGATTTACCGAGATCTTAAATGTTCGAATATTTTGCTTGGTGAAGACTATCAACCGAAACTATCTGACTTTGGGTTGGCTAAAGTAGGACCAAGCGGGGATAAAACCCATGTCTCGACAAGGGTTATGGGAACGTACGGATACTGTGCTCCTGACTACGCTATGACGGGTCAGCTCACATTTAAATCCGATATATACAGTTTTGGAGTAGTCCTTCTCGAGCTTATCACCGGAAGGAAAGCGATTGACAATACAAAAACGCGTAAAGATCAGAATTTGGTTGGATGGGCACGACCATTGTTCAAAGACAGGAGGAACTTCCCAAAAATGGTTGATCCATTGCTTCAGGGACAATACCCAGTTAGAGGACTGTACCAAGCACTAGCAATATCAGCAATGTGCGTTCAAGAGCAGCCTACCATGAGACCAGTGGTATCTGATGTAGTATTGGCTCTCAACTTCTTAGCCTCTTCTAAATATGATCCGAATAGCCCTAGCAGCAGCAGCGGGAAGAACCCTTCTTTTCACAGAGACAGAGATGATGAAGAGAAAAGACCACACCTCGTCAAGGAAACTGAATGTGAAGGGTCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

423

Amino Acids

46.76

Weight (kDa)

8.45

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	108 - 314	5.2e-43	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	108 - 316	4e-43	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07870 AT1G07870 AT2G28590 AT2G28590
fragaria_vesca	FvH4_3g34150 FvH4_3g34150 FvH4_3g34150 FvH4_3g34150
malus_domestica	MD03G1107300.v1.1 MD11G1120000.v1.1
prunus_persica	Prupe.6G090100_v2.0.a1 Prupe.6G090100_v2.0.a1
pyrus_communis	pycom03g08680 pycom11g10140
rosa_chinensis	RchiOBHm_Chr5g0061791
rosa_laevigata	RLG00000035506
rosa_multiflora	Rmu_ssc0000275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018940
rosa_rugosa	Rorug05G0343900 Rorug05G0344000
rosa_samantha	Rh5AG404800
rosa_wichuraiana	Rw5G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	937
AciI	CCGC	3 cut(s)	542, 771, 1182
AclWI	GGATC	6 cut(s)	33, 384, 543, 556, 1004, 1151
AcsI	RAATTY	2 cut(s)	431, 949
AcuI	CTGAAG	1 cut(s)	1004
AcyI	GRCGYC	1 cut(s)	668
AfaI	GTAC	4 cut(s)	88, 530, 812, 1049
AfiI	CCNNNNNNNGG	3 cut(s)	1003, 1040, 1243
AflIII	ACRYGT	2 cut(s)	568, 935
AgsI	TTSAA	8 cut(s)	147, 232, 281, 355, 419, 557, 979, 1082
AhdI	GACNNNNNGTC	1 cut(s)	456
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	5 cut(s)	296, 487, 626, 850, 898
AluI	AGCT	5 cut(s)	296, 487, 626, 850, 898
Alw21I	GWGCWC	1 cut(s)	826
Alw26I	GTCTC	6 cut(s)	38, 111, 511, 793, 1093, 1200
AlwI	GGATC	6 cut(s)	33, 384, 543, 556, 1004, 1151
Ama87I	CYCGRG	1 cut(s)	893
ApeKI	GCWGC	6 cut(s)	623, 632, 1087, 1173, 1176, 1179
ApoI	RAATTY	2 cut(s)	431, 949
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
AspS9I	GGNCC	2 cut(s)	764, 1263
AsuC2I	CCSGG	1 cut(s)	610
AsuHPI	GGTGA	4 cut(s)	341, 521, 728, 895
AsuII	TTCGAA	1 cut(s)	701
AvaI	CYCGRG	1 cut(s)	893
AvaII	GGWCC	2 cut(s)	764, 1263
BaeGI	GKGCMC	1 cut(s)	967
BamHI	GGATCC	1 cut(s)	548
BarI	GAAGNNNNNNTAC	2 cut(s)	549, 581
BbsI	GAAGAC	1 cut(s)	726
Bbv12I	GWGCWC	1 cut(s)	826
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	6 cut(s)	635, 644, 1099, 1185, 1188, 1191
BccI	CCATC	2 cut(s)	477, 954
BcgI	CGANNNNNNTGC	4 cut(s)	386, 420, 691, 725
BciVI	GTATCC	1 cut(s)	809
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	610
BcoDI	GTCTC	6 cut(s)	38, 111, 511, 793, 1093, 1200
BfaI	CTAG	2 cut(s)	1058, 1170
BfmI	CTRYAG	1 cut(s)	363
BfuI	GTATCC	1 cut(s)	809
BglII	AGATCT	1 cut(s)	688
BisI	GCNGC	7 cut(s)	542, 624, 633, 1088, 1174, 1177, 1180
BlsI	GCNGC	7 cut(s)	543, 625, 634, 1089, 1175, 1178, 1181
Bme1390I	CCNGG	1 cut(s)	610
Bme18I	GGWCC	2 cut(s)	764, 1263
BmeRI	GACNNNNNGTC	1 cut(s)	456
BmeT110I	CYCGRG	1 cut(s)	893
BmgT120I	GGNCC	2 cut(s)	764, 1263
BmiI	GGNNCC	2 cut(s)	550, 1264
BmrFI	CCNGG	1 cut(s)	610
BmrI	ACTGGG	2 cut(s)	129, 1028
BmsI	GCATC	1 cut(s)	5
BmuI	ACTGGG	2 cut(s)	129, 1028
BpiI	GAAGAC	1 cut(s)	726
Bpu10I	CCTNAGC	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	610
BsaHI	GRCGYC	1 cut(s)	668
BsaI	GGTCTC	1 cut(s)	1093
BsaWI	WCCGGW	1 cut(s)	905
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	3 cut(s)	1003, 1040, 1243
Bse1I	ACTGG	5 cut(s)	135, 528, 605, 1034, 1103
Bse3DI	GCAATG	2 cut(s)	1013, 1077
BseGI	GGATG	5 cut(s)	20, 223, 469, 618, 965
BseLI	CCNNNNNNNGG	3 cut(s)	1003, 1040, 1243
BseMI	GCAATG	2 cut(s)	1013, 1077
BseMII	CTCAG	2 cut(s)	143, 495
BseNI	ACTGG	5 cut(s)	135, 528, 605, 1034, 1103
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	967
BseXI	GCAGC	6 cut(s)	635, 644, 1099, 1185, 1188, 1191
BsgI	GTGCAG	1 cut(s)	651
Bsh1236I	CGCG	1 cut(s)	937
BsiHKAI	GWGCWC	1 cut(s)	826
BsiHKCI	CYCGRG	1 cut(s)	893
BsiSI	CCGG	2 cut(s)	610, 906
BsiWI	CGTACG	1 cut(s)	810
BslFI	GGGAC	1 cut(s)	1038
BslI	CCNNNNNNNGG	3 cut(s)	1003, 1040, 1243
BsmAI	GTCTC	6 cut(s)	38, 111, 511, 793, 1093, 1200
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	1038
Bso31I	GGTCTC	1 cut(s)	1093
BsoBI	CYCGRG	1 cut(s)	893
Bsp119I	TTCGAA	1 cut(s)	701
Bsp1286I	GDGCHC	2 cut(s)	826, 967
BspACI	CCGC	3 cut(s)	542, 771, 1182
BspCNI	CTCAG	2 cut(s)	142, 496
BspFNI	CGCG	1 cut(s)	937
BspLI	GGNNCC	2 cut(s)	550, 1264
BspPI	GGATC	6 cut(s)	33, 384, 543, 556, 1004, 1151
BspT104I	TTCGAA	1 cut(s)	701
BspTNI	GGTCTC	1 cut(s)	1093
BsrDI	GCAATG	2 cut(s)	1013, 1077
BsrI	ACTGG	5 cut(s)	135, 528, 605, 1034, 1103
BssNI	GRCGYC	1 cut(s)	668
Bst4CI	ACNGT	4 cut(s)	61, 821, 875, 1047
Bst6I	CTCTTC	2 cut(s)	1150, 1215
BstACI	GRCGYC	1 cut(s)	668
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstBI	TTCGAA	1 cut(s)	701
BstDEI	CTNAG	5 cut(s)	102, 129, 455, 504, 1138
BstENI	CCTNNNNNAGG	1 cut(s)	1241
BstF5I	GGATG	5 cut(s)	20, 223, 469, 618, 965
BstFNI	CGCG	1 cut(s)	937
BstMAI	GTCTC	6 cut(s)	38, 111, 511, 793, 1093, 1200
BstMWI	GCNNNNNNNGC	5 cut(s)	629, 632, 1067, 1173, 1179
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	608
BstSFI	CTRYAG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	967
BstUI	CGCG	1 cut(s)	937
BstV1I	GCAGC	6 cut(s)	635, 644, 1099, 1185, 1188, 1191
BstV2I	GAAGAC	1 cut(s)	726
BstX2I	RGATCY	2 cut(s)	548, 688
BstYI	RGATCY	2 cut(s)	548, 688
BsuI	GTATCC	1 cut(s)	809
BtsCI	GGATG	5 cut(s)	20, 223, 469, 618, 965
BtsIMutI	CAGTG	1 cut(s)	1110
Cfr13I	GGNCC	2 cut(s)	764, 1263
CseI	GACGC	1 cut(s)	676
Csp6I	GTAC	4 cut(s)	87, 529, 811, 1048
CviAII	CATG	4 cut(s)	569, 656, 785, 1096
CviQI	GTAC	4 cut(s)	87, 529, 811, 1048
DdeI	CTNAG	5 cut(s)	102, 129, 455, 504, 1138
DraI	TTTAAA	1 cut(s)	859
DriI	GACNNNNNGTC	1 cut(s)	456
Eam1104I	CTCTTC	2 cut(s)	1150, 1215
Eam1105I	GACNNNNNGTC	1 cut(s)	456
EarI	CTCTTC	2 cut(s)	1150, 1215
Eco31I	GGTCTC	1 cut(s)	1093
Eco47I	GGWCC	2 cut(s)	764, 1263
Eco57I	CTGAAG	1 cut(s)	1004
Eco88I	CYCGRG	1 cut(s)	893
EcoNI	CCTNNNNNAGG	1 cut(s)	1241
EcoO109I	RGGNCCY	1 cut(s)	1263
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	4 cut(s)	572, 659, 788, 1099
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	1 cut(s)	1038
FatI	CATG	4 cut(s)	568, 655, 784, 1095
FauI	CCCGC	2 cut(s)	764, 1175
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	7 cut(s)	542, 624, 633, 1088, 1174, 1177, 1180
FokI	GGATG	5 cut(s)	27, 230, 456, 625, 972
Fsp4HI	GCNGC	7 cut(s)	542, 624, 633, 1088, 1174, 1177, 1180
FspBI	CTAG	2 cut(s)	1058, 1170
GluI	GCNGC	7 cut(s)	542, 624, 633, 1088, 1174, 1177, 1180
HapII	CCGG	2 cut(s)	610, 906
HgaI	GACGC	1 cut(s)	676
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	4 cut(s)	572, 659, 788, 1099
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	6 cut(s)	127, 143, 232, 423, 451, 475
HpaII	CCGG	2 cut(s)	610, 906
HphI	GGTGA	4 cut(s)	341, 521, 728, 895
Hpy166II	GTNNAC	2 cut(s)	175, 529
Hpy188III	TCNNGA	6 cut(s)	281, 596, 790, 827, 893, 1082
Hpy8I	GTNNAC	2 cut(s)	175, 529
HpyAV	CCTTC	8 cut(s)	176, 217, 326, 588, 899, 903, 1203, 1253
HpyCH4III	ACNGT	4 cut(s)	61, 821, 875, 1047
HpyCH4IV	ACGT	1 cut(s)	809
HpyCH4V	TGCA	5 cut(s)	18, 290, 389, 632, 655
HpyF10VI	GCNNNNNNNGC	5 cut(s)	629, 632, 1067, 1173, 1179
HpyF3I	CTNAG	5 cut(s)	102, 129, 455, 504, 1138
HpySE526I	ACGT	1 cut(s)	809
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	4 cut(s)	572, 659, 788, 1099
Ksp22I	TGATCA	1 cut(s)	511
LmnI	GCTCC	1 cut(s)	829
Lsp1109I	GCAGC	6 cut(s)	635, 644, 1099, 1185, 1188, 1191
LweI	GCATC	1 cut(s)	5
MaeI	CTAG	2 cut(s)	1058, 1170
MaeII	ACGT	1 cut(s)	809
MaeIII	GTNAC	1 cut(s)	247
MboII	GAAGA	7 cut(s)	212, 268, 569, 731, 1137, 1198, 1232
MflI	RGATCY	2 cut(s)	548, 688
MhlI	GDGCHC	2 cut(s)	826, 967
MluCI	AATT	4 cut(s)	75, 371, 431, 949
MluI	ACGCGT	1 cut(s)	935
MlyI	GAGTC	2 cut(s)	121, 445
MmeI	TCCRAC	1 cut(s)	937
MseI	TTAA	2 cut(s)	693, 858
MslI	CAYNNNNRTG	2 cut(s)	567, 611
MspA1I	CMGCKG	2 cut(s)	626, 1182
MspI	CCGG	2 cut(s)	610, 906
MspR9I	CCNGG	1 cut(s)	610
MvnI	CGCG	1 cut(s)	937
MwoI	GCNNNNNNNGC	5 cut(s)	629, 632, 1067, 1173, 1179
NciI	CCSGG	1 cut(s)	610
NlaIII	CATG	4 cut(s)	572, 659, 788, 1099
NlaIV	GGNNCC	2 cut(s)	550, 1264
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	572
NspV	TTCGAA	1 cut(s)	701
PaeR7I	CTCGAG	1 cut(s)	893
PciI	ACATGT	1 cut(s)	568
PfeI	GAWTC	4 cut(s)	143, 232, 423, 475
Pfl23II	CGTACG	1 cut(s)	810
PflFI	GACNNNGTC	1 cut(s)	245
PkrI	GCNGC	7 cut(s)	543, 625, 634, 1089, 1175, 1178, 1181
PleI	GAGTC	2 cut(s)	121, 445
PpsI	GAGTC	2 cut(s)	121, 445
PpuMI	RGGWCCY	1 cut(s)	1263
PscI	ACATGT	1 cut(s)	568
Psp5II	RGGWCCY	1 cut(s)	1263
PspLI	CGTACG	1 cut(s)	810
PspN4I	GGNNCC	2 cut(s)	550, 1264
PspPI	GGNCC	2 cut(s)	764, 1263
PspPPI	RGGWCCY	1 cut(s)	1263
PsuI	RGATCY	2 cut(s)	548, 688
PsyI	GACNNNGTC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	4 cut(s)	88, 530, 812, 1049
RsaNI	GTAC	4 cut(s)	87, 529, 811, 1048
RseI	CAYNNNNRTG	2 cut(s)	567, 611
SaqAI	TTAA	2 cut(s)	693, 858
SatI	GCNGC	7 cut(s)	542, 624, 633, 1088, 1174, 1177, 1180
Sau96I	GGNCC	2 cut(s)	764, 1263
SchI	GAGTC	2 cut(s)	121, 445
ScrFI	CCNGG	1 cut(s)	610
SduI	GDGCHC	2 cut(s)	826, 967
SfaNI	GCATC	1 cut(s)	5
SfcI	CTRYAG	1 cut(s)	363
Sfr274I	CTCGAG	1 cut(s)	893
SfuI	TTCGAA	1 cut(s)	701
SinI	GGWCC	2 cut(s)	764, 1263
SlaI	CTCGAG	1 cut(s)	893
SmiI	ATTTAAAT	1 cut(s)	859
SmiMI	CAYNNNNRTG	2 cut(s)	567, 611
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
Sse9I	AATT	4 cut(s)	75, 371, 431, 949
SsiI	CCGC	3 cut(s)	542, 771, 1182
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	2 cut(s)	1058, 1170
StyD4I	CCNGG	1 cut(s)	608
SwaI	ATTTAAAT	1 cut(s)	859
TaaI	ACNGT	4 cut(s)	61, 821, 875, 1047
TaiI	ACGT	1 cut(s)	812
TaqI	TCGA	4 cut(s)	29, 701, 791, 894
TasI	AATT	4 cut(s)	75, 371, 431, 949
TauI	GCSGC	1 cut(s)	544
TfiI	GAWTC	4 cut(s)	143, 232, 423, 475
Tru1I	TTAA	2 cut(s)	693, 858
Tru9I	TTAA	2 cut(s)	693, 858
TscAI	CASTG	1 cut(s)	1110
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	6 cut(s)	623, 632, 1087, 1173, 1176, 1179
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	3 cut(s)	195, 629, 1233
TspGWI	ACGGA	1 cut(s)	828
TspRI	CASTG	1 cut(s)	1110
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	764, 1263
XagI	CCTNNNNNAGG	1 cut(s)	1241
XapI	RAATTY	2 cut(s)	431, 949
XceI	RCATGY	1 cut(s)	572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1102
XhoI	CTCGAG	1 cut(s)	893
XspI	CTAG	2 cut(s)	1058, 1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.