Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008925

Physical Location & Seq

Genomic Coordinates Reverse (-)

42294555 .. 42298032

Gene Structure 3478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0343900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAAAATTGAAATTCTTTACATTGAAGGCCTTGGTTATGGAAATCTGTTAGAAGAAGAAGCAATTAGCCTTTTGAATATGGTGAAAGCAATTTTTTCTGGACAACCACTTCCTACCAAACTGATGCTTAAGAACAATTGTATTTGTCTCGCTCCTGATGCTAACCTCATTAGAGATGTCAGTGTGAAGACGAAGGAGCAGCTGGGATATGTTGTTCAGTGTGACTGGGAGGTGATATTTGGTGTTTTTGGCTTTTATTTCATAGTTCAGTCGTCGGAGTACAACCCAATCTACTTGCAGCGGAGAGTTGACAACATTATCAATGGTCTGGAAGACATTTTGATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

116

Amino Acids

13.2

Weight (kDa)

4.59

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PqqF-like_C_4	PF22456	63 - 111	6.6e-09	PQQ synthase PqqF-like, C-terminal lobe domain 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07870 AT1G07870 AT2G28590 AT2G28590
fragaria_vesca	FvH4_3g34150 FvH4_3g34150 FvH4_3g34150 FvH4_3g34150
malus_domestica	MD03G1107300.v1.1 MD11G1120000.v1.1
prunus_persica	Prupe.6G090100_v2.0.a1 Prupe.6G090100_v2.0.a1
pyrus_communis	pycom03g08680 pycom11g10140
rosa_chinensis	RchiOBHm_Chr5g0061791
rosa_laevigata	RLG00000035506
rosa_multiflora	Rmu_ssc0000275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018940
rosa_rugosa	Rorug05G0343900 Rorug05G0344000
rosa_samantha	Rh5AG404800
rosa_wichuraiana	Rw5G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	12
AfaI	GTAC	1 cut(s)	281
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	11, 26, 76
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	2 cut(s)	199, 298
ApoI	RAATTY	1 cut(s)	12
AsuHPI	GGTGA	2 cut(s)	94, 244
BbsI	GAAGAC	2 cut(s)	194, 339
BbvI	GCAGC	2 cut(s)	211, 310
BcoDI	GTCTC	1 cut(s)	152
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	2 cut(s)	200, 299
BlsI	GCNGC	2 cut(s)	201, 300
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	114, 148
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	2 cut(s)	194, 339
BsaJI	CCNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	211, 310
BseYI	CCCAGC	1 cut(s)	202
BshFI	GGCC	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	1 cut(s)	30
BspTI	CTTAAG	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	31
BstAFI	CTTAAG	1 cut(s)	128
BstMAI	GTCTC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	211, 310
BstV2I	GAAGAC	2 cut(s)	194, 339
BsuRI	GGCC	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	187, 224
Csp6I	GTAC	1 cut(s)	280
CviJI	RGCY	4 cut(s)	30, 69, 202, 252
CviKI_1	RGCY	4 cut(s)	30, 69, 202, 252
CviQI	GTAC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	31
Eco147I	AGGCCT	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaiI	YATR	4 cut(s)	39, 80, 210, 263
Fnu4HI	GCNGC	2 cut(s)	200, 299
Fsp4HI	GCNGC	2 cut(s)	200, 299
GluI	GCNGC	2 cut(s)	200, 299
GsaI	CCCAGC	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HphI	GGTGA	2 cut(s)	94, 244
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	3 cut(s)	99, 155, 329
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	2 cut(s)	20, 187
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
LmnI	GCTCC	2 cut(s)	157, 196
LpnPI	CCDG	5 cut(s)	84, 168, 188, 211, 314
Lsp1109I	GCAGC	2 cut(s)	211, 310
LweI	GCATC	2 cut(s)	114, 148
MaeIII	GTNAC	1 cut(s)	221
MboII	GAAGA	4 cut(s)	65, 68, 199, 344
MfeI	CAATTG	1 cut(s)	136
MluCI	AATT	5 cut(s)	6, 12, 63, 90, 136
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	2 cut(s)	176, 223
MseI	TTAA	1 cut(s)	129
MspA1I	CMGCKG	2 cut(s)	202, 301
MspCI	CTTAAG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	221
PceI	AGGCCT	1 cut(s)	30
PkrI	GCNGC	2 cut(s)	201, 300
PspFI	CCCAGC	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	2 cut(s)	200, 299
SetI	ASST	3 cut(s)	168, 204, 234
SfaNI	GCATC	2 cut(s)	114, 148
SgeI	CNNG	8 cut(s)	44, 111, 161, 167, 215, 238, 307, 341
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	5 cut(s)	6, 12, 63, 90, 136
SseBI	AGGCCT	1 cut(s)	30
SsiI	CCGC	1 cut(s)	301
StuI	AGGCCT	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	31
TasI	AATT	5 cut(s)	6, 12, 63, 90, 136
TatI	WGTACW	1 cut(s)	279
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	2 cut(s)	187, 224
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	199, 298
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	17, 250
TspRI	CASTG	2 cut(s)	187, 224
Vha464I	CTTAAG	1 cut(s)	128
XapI	RAATTY	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.