Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008925

Physical Location & Seq

Genomic Coordinates Reverse (-)

23047869 .. 23051855

Gene Structure 3987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGAGTTGCTTTTGCTGTACAAAAAATTCAAAAAAAGAAGCAGAGAGGAACAATAAGAACAACAACACCCACATCAACGCTAGCAAATCAAATCGTCTAGATACTTCAAAAGTGAATTCAGAGGGGAATGTAAAAAAGGAATTGGGTGTAAAAAAGGAGGAGGTCTCTAAGGTTGACCAGTTATCAATCGATGTCAAGGAGTTGAACATAAAGGAGGAGGTTTCTAAGGATGGAAAGACTAATGGCAGGCGGCCACAGGCATTTACGTTGGAGGAAATGGAAGTAGCAACCCAAAACTTCAGTCCTGACTGCTTTATAGGTGAAGGAGGATTCGGCAAAGTTTACAAGGGCCACTTAGAGAAAACTAACCAGATTGTTGCTATCAAGCAGCTTGATCGCAATGGTTGCCAAGGGATCAGGGAATTTGTTGTTGAAGTATTGACGCTAGGTTTGGCAGATCATCAGAATCTTGTCAAATTGATTGGCTTTTGTGCTGAGGGGGATCAAAGGCTATTGGTTTATGAATATATGCCATTTGGATCTTTGGAAAACCATTTGCATGATCTTCAAGCTGGCAGGAATGTTCTGGATTGGAATACAAGAATGAAGATCGCAGCTGGTGCAGCAAGAGGTTTAGAGTATCTGCATGAGAAAATGCAGCCTGCTATCATATATCGCGACCTGAAATGCTCAAACATTTTGCTCGGCGAGGATTATCATCCAAAGCTATCTGATTTTGGCTTGGCCAAAGTAGGTCCGAGTGGAGATAAGACTCATGTTTCAACTAGGGTTATGGGAACATATGGGTACTGTGCACCAGATTATGCAATGACAGGTCAGCTGACTTTTAAATCAGATGTTTATAGCTTTGGGGTGGTTCTTTTGGAGCTTATTACAGGCCGAAAAGCTATTGATGGCACAAGACCTCTCAGGGAGCAAAACCTCGTAGCATGGGCAAGACCCTTGTTCAGAGACCGGAAGAAATTCTCACAGATGGTGGATCCGTTGCTCCAGGGTCAGTATCCTGTCAGGGGATTATACCAAGCTCTTGCTATTGCTGCGATGTGCGTTCAGGAGCAGCCTAATATGCGGCCTGTCATAACCGATATAGTGACAGCACTAAATTACCTTGCTTCCCAGAAATATGACCCCCAATTCCATCCAGTACAAAGCTCCAGAAGGAGTCCATCTTCTCCTAAAGTGAGAAAAGATGATAATATGAGTAGGAATGCGGGTAATGGGCCAGAGAGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

418

Amino Acids

46.87

Weight (kDa)

8.86

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	105 - 371	6.3e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	106 - 373	8.7e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07870 AT1G07870 AT2G28590 AT2G28590
fragaria_vesca	FvH4_3g34150 FvH4_3g34150 FvH4_3g34150 FvH4_3g34150
malus_domestica	MD03G1107300.v1.1 MD11G1120000.v1.1
prunus_persica	Prupe.6G090100_v2.0.a1 Prupe.6G090100_v2.0.a1
pyrus_communis	pycom03g08680 pycom11g10140
rosa_chinensis	RchiOBHm_Chr5g0061791
rosa_laevigata	RLG00000035506
rosa_multiflora	Rmu_ssc0000275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018940
rosa_rugosa	Rorug05G0343900 Rorug05G0344000
rosa_samantha	Rh5AG404800
rosa_wichuraiana	Rw5G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	678
AciI	CCGC	3 cut(s)	250, 1090, 1232
AclWI	GGATC	5 cut(s)	422, 510, 547, 995, 1008
AcoI	YGGCCR	2 cut(s)	251, 744
AcsI	RAATTY	4 cut(s)	25, 115, 422, 983
AcuI	CTGAAG	1 cut(s)	283
AfaI	GTAC	3 cut(s)	19, 809, 1167
AfiI	CCNNNNNNNGG	1 cut(s)	1031
AgsI	TTSAA	6 cut(s)	30, 108, 205, 434, 569, 783
AjnI	CCWGG	1 cut(s)	1011
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	3 cut(s)	169, 966, 1245
Alw44I	GTGCAC	1 cut(s)	813
AlwI	GGATC	5 cut(s)	422, 510, 547, 995, 1008
AoxI	GGCC	6 cut(s)	251, 349, 744, 898, 1091, 1241
ApaLI	GTGCAC	1 cut(s)	813
ApeKI	GCWGC	6 cut(s)	388, 614, 623, 658, 1058, 1078
ApoI	RAATTY	4 cut(s)	25, 115, 422, 983
ArsI	GACNNNNNNTTYG	4 cut(s)	286, 318, 433, 465
Asp700I	GAANNNNTTC	1 cut(s)	983
AspS9I	GGNCC	3 cut(s)	349, 755, 1241
AsuHPI	GGTGA	1 cut(s)	332
AsuNHI	GCTAGC	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	755
BaeGI	GKGCMC	1 cut(s)	817
BalI	TGGCCA	1 cut(s)	746
BamHI	GGATCC	1 cut(s)	1000
Bbv12I	GWGCWC	1 cut(s)	817
BbvCI	CCTCAGC	1 cut(s)	495
BbvI	GCAGC	6 cut(s)	400, 626, 635, 670, 1045, 1090
BccI	CCATC	5 cut(s)	224, 908, 988, 1167, 1195
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	1 cut(s)	1013
BciVI	GTATCC	1 cut(s)	1032
BcoDI	GTCTC	3 cut(s)	169, 966, 1245
BfaI	CTAG	4 cut(s)	81, 98, 446, 786
BfuI	GTATCC	1 cut(s)	1032
BisI	GCNGC	8 cut(s)	251, 389, 615, 624, 659, 1059, 1079, 1091
BlsI	GCNGC	8 cut(s)	252, 390, 616, 625, 660, 1060, 1080, 1092
Bme1390I	CCNGG	1 cut(s)	1013
Bme18I	GGWCC	1 cut(s)	755
BmgT120I	GGNCC	3 cut(s)	349, 755, 1241
BmiI	GGNNCC	1 cut(s)	1002
BmrFI	CCNGG	1 cut(s)	1013
BmtI	GCTAGC	1 cut(s)	84
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	2 cut(s)	995, 1159
Bpu10I	CCTNAGC	1 cut(s)	495
Bsa29I	ATCGAT	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	717
BsaI	GGTCTC	2 cut(s)	169, 966
BsaJI	CCNNGG	2 cut(s)	409, 1012
BsaWI	WCCGGW	1 cut(s)	975
Bsc4I	CCNNNNNNNGG	1 cut(s)	1031
Bse1I	ACTGG	2 cut(s)	178, 1163
Bse3DI	GCAATG	2 cut(s)	406, 834
Bse8I	GATNNNNATC	1 cut(s)	717
BseBI	CCWGG	1 cut(s)	1013
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	409, 1012
BseGI	GGATG	3 cut(s)	235, 718, 1159
BseJI	GATNNNNATC	1 cut(s)	717
BseLI	CCNNNNNNNGG	1 cut(s)	1031
BseMI	GCAATG	2 cut(s)	406, 834
BseMII	CTCAG	2 cut(s)	486, 943
BseNI	ACTGG	2 cut(s)	178, 1163
BseRI	GAGGAG	2 cut(s)	173, 230
BseSI	GKGCMC	1 cut(s)	817
BseXI	GCAGC	6 cut(s)	400, 626, 635, 670, 1045, 1090
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	678
BshFI	GGCC	6 cut(s)	253, 351, 746, 900, 1093, 1243
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	817
BsiSI	CCGG	1 cut(s)	976
BslI	CCNNNNNNNGG	1 cut(s)	1031
BsmAI	GTCTC	3 cut(s)	169, 966, 1245
BsmI	GAATGC	1 cut(s)	1234
BsnI	GGCC	6 cut(s)	253, 351, 746, 900, 1093, 1243
Bso31I	GGTCTC	2 cut(s)	169, 966
Bsp1286I	GDGCHC	1 cut(s)	817
Bsp1407I	TGTACA	1 cut(s)	17
Bsp143I	GATC	8 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000
Bsp68I	TCGCGA	1 cut(s)	678
BspACI	CCGC	3 cut(s)	250, 1090, 1232
BspANI	GGCC	6 cut(s)	253, 351, 746, 900, 1093, 1243
BspCNI	CTCAG	2 cut(s)	487, 942
BspDI	ATCGAT	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	678
BspLI	GGNNCC	1 cut(s)	1002
BspOI	GCTAGC	1 cut(s)	84
BspPI	GGATC	5 cut(s)	422, 510, 547, 995, 1008
BspTNI	GGTCTC	2 cut(s)	169, 966
BsrDI	GCAATG	2 cut(s)	406, 834
BsrGI	TGTACA	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	178, 1163
BssECI	CCNNGG	2 cut(s)	409, 1012
BssMI	GATC	8 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	1013
Bst4CI	ACNGT	1 cut(s)	812
BstAPI	GCANNNNNTGC	2 cut(s)	405, 620
BstAUI	TGTACA	1 cut(s)	17
BstC8I	GCNNGC	4 cut(s)	82, 248, 574, 663
BstDEI	CTNAG	5 cut(s)	168, 225, 355, 495, 929
BstF5I	GGATG	3 cut(s)	235, 718, 1159
BstFNI	CGCG	1 cut(s)	678
BstKTI	GATC	8 cut(s)	397, 417, 460, 505, 542, 565, 612, 1003
BstMAI	GTCTC	3 cut(s)	169, 966, 1245
BstMBI	GATC	8 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000
BstMWI	GCNNNNNNNGC	5 cut(s)	405, 620, 623, 1058, 1087
BstNI	CCWGG	1 cut(s)	1013
BstSCI	CCNGG	1 cut(s)	1011
BstSLI	GKGCMC	1 cut(s)	817
BstUI	CGCG	1 cut(s)	678
BstV1I	GCAGC	6 cut(s)	400, 626, 635, 670, 1045, 1090
BstX2I	RGATCY	2 cut(s)	539, 1000
BstYI	RGATCY	2 cut(s)	539, 1000
Bsu15I	ATCGAT	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	1032
BsuRI	GGCC	6 cut(s)	253, 351, 746, 900, 1093, 1243
BsuTUI	ATCGAT	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	1076
BtsCI	GGATG	3 cut(s)	235, 718, 1159
BtuMI	TCGCGA	1 cut(s)	678
Cac8I	GCNNGC	4 cut(s)	82, 248, 574, 663
Cfr13I	GGNCC	3 cut(s)	349, 755, 1241
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	3 cut(s)	18, 808, 1166
CviAII	CATG	4 cut(s)	560, 647, 776, 951
CviQI	GTAC	3 cut(s)	18, 808, 1166
DdeI	CTNAG	5 cut(s)	168, 225, 355, 495, 929
DpnI	GATC	8 cut(s)	396, 416, 459, 504, 541, 564, 611, 1002
DpnII	GATC	8 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000
DraI	TTTAAA	1 cut(s)	850
EaeI	YGGCCR	2 cut(s)	251, 744
Eco130I	CCWWGG	1 cut(s)	409
Eco31I	GGTCTC	2 cut(s)	169, 966
Eco47I	GGWCC	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	1011
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	4 cut(s)	563, 650, 779, 954
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	4 cut(s)	559, 646, 775, 950
FauI	CCCGC	1 cut(s)	1225
FauNDI	CATATG	1 cut(s)	802
Fnu4HI	GCNGC	8 cut(s)	251, 389, 615, 624, 659, 1059, 1079, 1091
FokI	GGATG	3 cut(s)	242, 705, 1146
Fsp4HI	GCNGC	8 cut(s)	251, 389, 615, 624, 659, 1059, 1079, 1091
FspBI	CTAG	4 cut(s)	81, 98, 446, 786
GluI	GCNGC	8 cut(s)	251, 389, 615, 624, 659, 1059, 1079, 1091
GsuI	CTGGAG	2 cut(s)	995, 1159
HaeIII	GGCC	6 cut(s)	253, 351, 746, 900, 1093, 1243
HapII	CCGG	1 cut(s)	976
HgaI	GACGC	1 cut(s)	451
Hin1II	CATG	4 cut(s)	563, 650, 779, 954
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	4 cut(s)	330, 466, 772, 1183
HpaII	CCGG	1 cut(s)	976
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	3 cut(s)	175, 343, 815
Hpy188I	TCNGA	6 cut(s)	121, 465, 733, 759, 856, 971
Hpy188III	TCNNGA	6 cut(s)	98, 305, 587, 677, 1073, 1176
Hpy8I	GTNNAC	3 cut(s)	175, 343, 815
HpyAV	CCTTC	2 cut(s)	317, 1173
HpyCH4III	ACNGT	1 cut(s)	812
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	6 cut(s)	559, 623, 646, 658, 815, 827
HpyF10VI	GCNNNNNNNGC	5 cut(s)	405, 620, 623, 1058, 1087
HpyF3I	CTNAG	5 cut(s)	168, 225, 355, 495, 929
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	4 cut(s)	563, 650, 779, 954
Kzo9I	GATC	8 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000
LmnI	GCTCC	5 cut(s)	886, 934, 1014, 1075, 1178
Lsp1109I	GCAGC	6 cut(s)	400, 626, 635, 670, 1045, 1090
MaeI	CTAG	4 cut(s)	81, 98, 446, 786
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	1111
MalI	GATC	8 cut(s)	396, 416, 459, 504, 541, 564, 611, 1002
MboI	GATC	8 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000
MboII	GAAGA	4 cut(s)	557, 619, 991, 1182
MflI	RGATCY	2 cut(s)	539, 1000
MhlI	GDGCHC	1 cut(s)	817
MlsI	TGGCCA	1 cut(s)	746
MluCI	AATT	8 cut(s)	25, 115, 140, 422, 476, 983, 1123, 1154
MluNI	TGGCCA	1 cut(s)	746
MlyI	GAGTC	2 cut(s)	766, 1192
MmeI	TCCRAC	1 cut(s)	249
Mox20I	TGGCCA	1 cut(s)	746
MroXI	GAANNNNTTC	1 cut(s)	983
MscI	TGGCCA	1 cut(s)	746
MseI	TTAA	1 cut(s)	849
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	746
MspA1I	CMGCKG	2 cut(s)	617, 841
MspI	CCGG	1 cut(s)	976
MspR9I	CCNGG	1 cut(s)	1013
Mva1269I	GAATGC	1 cut(s)	1234
MvaI	CCWGG	1 cut(s)	1013
MvnI	CGCG	1 cut(s)	678
MwoI	GCNNNNNNNGC	5 cut(s)	405, 620, 623, 1058, 1087
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	8 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000
NheI	GCTAGC	1 cut(s)	80
NlaIII	CATG	4 cut(s)	563, 650, 779, 954
NlaIV	GGNNCC	1 cut(s)	1002
NmeAIII	GCCGAG	1 cut(s)	684
NmuCI	GTSAC	1 cut(s)	1111
NruI	TCGCGA	1 cut(s)	678
PctI	GAATGC	1 cut(s)	1234
PdmI	GAANNNNTTC	1 cut(s)	983
PfeI	GAWTC	2 cut(s)	330, 466
PkrI	GCNGC	8 cut(s)	252, 390, 616, 625, 660, 1060, 1080, 1092
PleI	GAGTC	2 cut(s)	766, 1191
PpsI	GAGTC	2 cut(s)	766, 1191
Psp6I	CCWGG	1 cut(s)	1011
PspGI	CCWGG	1 cut(s)	1011
PspN4I	GGNNCC	1 cut(s)	1002
PspPI	GGNCC	3 cut(s)	349, 755, 1241
PsuI	RGATCY	2 cut(s)	539, 1000
PvuII	CAGCTG	2 cut(s)	617, 841
RruI	TCGCGA	1 cut(s)	678
RsaI	GTAC	3 cut(s)	19, 809, 1167
RsaNI	GTAC	3 cut(s)	18, 808, 1166
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	1 cut(s)	849
SatI	GCNGC	8 cut(s)	251, 389, 615, 624, 659, 1059, 1079, 1091
Sau3AI	GATC	8 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000
Sau96I	GGNCC	3 cut(s)	349, 755, 1241
SchI	GAGTC	2 cut(s)	766, 1192
ScrFI	CCNGG	1 cut(s)	1013
SduI	GDGCHC	1 cut(s)	817
SinI	GGWCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	558
Sse9I	AATT	8 cut(s)	25, 115, 140, 422, 476, 983, 1123, 1154
SsiI	CCGC	3 cut(s)	250, 1090, 1232
SspMI	CTAG	4 cut(s)	81, 98, 446, 786
StyD4I	CCNGG	1 cut(s)	1011
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	812
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	189
TasI	AATT	8 cut(s)	25, 115, 140, 422, 476, 983, 1123, 1154
TatI	WGTACW	2 cut(s)	17, 1165
TauI	GCSGC	2 cut(s)	253, 1093
TfiI	GAWTC	2 cut(s)	330, 466
Tru1I	TTAA	1 cut(s)	849
Tru9I	TTAA	1 cut(s)	849
TseFI	GTSAC	1 cut(s)	1111
TseI	GCWGC	6 cut(s)	388, 614, 623, 658, 1058, 1078
Tsp45I	GTSAC	1 cut(s)	1111
TspDTI	ATGAA	2 cut(s)	537, 620
TspGWI	ACGGA	1 cut(s)	993
VneI	GTGCAC	1 cut(s)	813
VpaK11BI	GGWCC	1 cut(s)	755
XapI	RAATTY	4 cut(s)	25, 115, 422, 983
XbaI	TCTAGA	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	983
XspI	CTAG	4 cut(s)	81, 98, 446, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.