Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008925

Physical Location & Seq

Genomic Coordinates Reverse (-)

7023151 .. 7026134

Gene Structure 2984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGAGCTGTTTTTGCTGCTCTAAGAAATCAATCAAAGAACCAGAGAAGGAAATTACCAACATCAACACCAACAAACCCAATCATCAAGGTCAAGTGAATACGAATGGTGATGTGAAAAAGGAATTGGGTGTGAAAAAGGAAATGGTTGTAAAAAAGGAGGAGGCCACGAAGGATGACCAGTTGTCGTTGGATGTAAAGGAGTTGAATATAAAAGAGGAGGGTTCCAACGATGGAAAAACCGCTGGCAAGCGGGCACAGACGTTTACATTTGCTGAACTTGCAGCATCAACTGACAATTTCAGGTCTGATTGCTTTGTAGGCGAAGGAGGGTTTGGAAAAGTTTACAAGGGTCAATTGGAGAAAATTAATCAGGTTGTTGCTATCAAGCAGCTTGATCGTAATGGATGCCAAGGAATTAGGGAATTTGTTGTCGAAGTATTGACGCTTAGTTTGGCTGACCACCCTAATCTTGTCAAACTGCTTGGATTCTGTGCCGAGGGAGATCAGAGGCTATTGGTTTATGAATATATGCCATTAGGATCTTTGGAAAACCATTTGCATGTTCTTTCACCCAGCAGGAATGTGCTTGACTGGAATACAAGAATGAAGATAGCAGTTGGTGCCGCTAGGGGTTTAGAGTATCTGCATGAGAAAATGCAGCCCCCTGTTATATACCGTGACCTGAAATGCTCGAACATTTTGCTCGGTGAGGGGTATCATCCAAAGCTATCGGATTTTGGCCTGGCTAAAGTAGGTCCCAGTGGAGATAAAACTCATGTTTCTACTAGGGTTATGGGCACGTATGGGTATTGTGCACCGGATTATGCCATGACAGGTCAGCTGACTTTCAAATCAGATGTTTATAGCTTTGGGGTTGTTCTTTTGGAGCTTATCACAGGAAGGAAAGCTATTGATAATACAAGACCCGTCAGAGAGCAGAACCTGGTAGCATGGGCAAGACCCATGTTCAGAGACCGGAAGAAATTCTCAATAATGGTGGATCCGTTGCTTCAAGGTCACTATCCAGTCAGGGGATTATACCAAGCTCTTGCTATTGCTGCGATGTGCGTTCAAGAGCAGCCCAATATGCGGCCTGTCATAACTGACATAGTTACAGCGCTGCATTACCTTGCATCCCAGAAATATGATCACCAAACCGATCCAGTTCAAACCTTGAGAAAGGGTCCATCTTCTCCAAAAGTGAGGAGAGATGACGATATAACGCAGATTGGAGGTGACAGGCCAGAGAGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

419

Amino Acids

46.75

Weight (kDa)

8.56

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07870 AT1G07870 AT2G28590 AT2G28590
fragaria_vesca	FvH4_3g34150 FvH4_3g34150 FvH4_3g34150 FvH4_3g34150
malus_domestica	MD03G1107300.v1.1 MD11G1120000.v1.1
prunus_persica	Prupe.6G090100_v2.0.a1 Prupe.6G090100_v2.0.a1
pyrus_communis	pycom03g08680 pycom11g10140
rosa_chinensis	RchiOBHm_Chr5g0061791
rosa_laevigata	RLG00000035506
rosa_multiflora	Rmu_ssc0000275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018940
rosa_rugosa	Rorug05G0343900 Rorug05G0344000
rosa_samantha	Rh5AG404800
rosa_wichuraiana	Rw5G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	620
AciI	CCGC	4 cut(s)	240, 250, 624, 1090
AclWI	GGATC	4 cut(s)	547, 995, 1008, 1154
AcsI	RAATTY	2 cut(s)	422, 983
AfeI	AGCGCT	1 cut(s)	1119
AfiI	CCNNNNNNNGG	2 cut(s)	1031, 1089
AgsI	TTSAA	5 cut(s)	205, 850, 1013, 1073, 1169
AhdI	GACNNNNNGTC	1 cut(s)	181
AjnI	CCWGG	2 cut(s)	741, 942
AjuI	GAANNNNNNNTTGG	4 cut(s)	107, 139, 315, 347
AluBI	AGCT	8 cut(s)	6, 391, 727, 841, 867, 889, 908, 1046
AluI	AGCT	8 cut(s)	6, 391, 727, 841, 867, 889, 908, 1046
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	2 cut(s)	966, 1245
Alw44I	GTGCAC	1 cut(s)	813
AlwI	GGATC	4 cut(s)	547, 995, 1008, 1154
AlwNI	CAGNNNCTG	1 cut(s)	943
Aor51HI	AGCGCT	1 cut(s)	1119
AoxI	GGCC	4 cut(s)	162, 739, 1091, 1241
ApaLI	GTGCAC	1 cut(s)	813
ApeKI	GCWGC	7 cut(s)	15, 281, 388, 658, 1058, 1078, 1120
ApoI	RAATTY	2 cut(s)	422, 983
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
AseI	ATTAAT	1 cut(s)	366
Asp700I	GAANNNNTTC	1 cut(s)	983
AspLEI	GCGC	1 cut(s)	1120
AspS9I	GGNCC	2 cut(s)	755, 1184
AsuHPI	GGTGA	5 cut(s)	119, 561, 719, 1142, 1247
AvaII	GGWCC	2 cut(s)	755, 1184
BaeGI	GKGCMC	3 cut(s)	256, 800, 817
BamHI	GGATCC	1 cut(s)	1000
BanI	GGYRCC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	817
BbvI	GCAGC	7 cut(s)	2, 293, 400, 670, 1045, 1090, 1107
BccI	CCATC	2 cut(s)	224, 1195
BcgI	CGANNNNNNTGC	4 cut(s)	377, 411, 682, 716
BciT130I	CCWGG	2 cut(s)	743, 944
BclI	TGATCA	1 cut(s)	1147
BcoDI	GTCTC	2 cut(s)	966, 1245
BfaI	CTAG	3 cut(s)	627, 786, 1255
BfoI	RGCGCY	1 cut(s)	1121
BisI	GCNGC	9 cut(s)	16, 282, 389, 624, 659, 1059, 1079, 1091, 1121
BlsI	GCNGC	9 cut(s)	17, 283, 390, 625, 660, 1060, 1080, 1092, 1122
Bme1390I	CCNGG	2 cut(s)	743, 944
Bme18I	GGWCC	2 cut(s)	755, 1184
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	755, 1184
BmiI	GGNNCC	5 cut(s)	223, 622, 757, 1002, 1185
BmrFI	CCNGG	2 cut(s)	743, 944
BmrI	ACTGGG	1 cut(s)	753
BmsI	GCATC	3 cut(s)	293, 395, 1142
BmuI	ACTGGG	1 cut(s)	753
BpuEI	CTTGAG	1 cut(s)	1195
BsaAI	YACGTR	1 cut(s)	801
BsaI	GGTCTC	1 cut(s)	966
BsaJI	CCNNGG	2 cut(s)	409, 495
BsaWI	WCCGGW	2 cut(s)	817, 975
Bsc4I	CCNNNNNNNGG	2 cut(s)	1031, 1089
Bse1I	ACTGG	5 cut(s)	178, 596, 759, 1025, 1163
BseBI	CCWGG	2 cut(s)	743, 944
BseDI	CCNNGG	2 cut(s)	409, 495
BseGI	GGATG	5 cut(s)	178, 196, 410, 718, 1133
BseLI	CCNNNNNNNGG	2 cut(s)	1031, 1089
BseNI	ACTGG	5 cut(s)	178, 596, 759, 1025, 1163
BseRI	GAGGAG	3 cut(s)	173, 230, 1219
BseSI	GKGCMC	3 cut(s)	256, 800, 817
BseXI	GCAGC	7 cut(s)	2, 293, 400, 670, 1045, 1090, 1107
BseYI	CCCAGC	1 cut(s)	572
BshFI	GGCC	4 cut(s)	164, 741, 1093, 1243
BshNI	GGYRCC	1 cut(s)	620
BsiHKAI	GWGCWC	1 cut(s)	817
BsiSI	CCGG	2 cut(s)	818, 976
BslFI	GGGAC	1 cut(s)	741
BslI	CCNNNNNNNGG	2 cut(s)	1031, 1089
BsmAI	GTCTC	2 cut(s)	966, 1245
BsmFI	GGGAC	1 cut(s)	741
BsnI	GGCC	4 cut(s)	164, 741, 1093, 1243
Bso31I	GGTCTC	1 cut(s)	966
Bsp1286I	GDGCHC	3 cut(s)	256, 800, 817
Bsp143I	GATC	6 cut(s)	394, 502, 539, 1000, 1147, 1159
BspACI	CCGC	4 cut(s)	240, 250, 624, 1090
BspANI	GGCC	4 cut(s)	164, 741, 1093, 1243
BspLI	GGNNCC	5 cut(s)	223, 622, 757, 1002, 1185
BspPI	GGATC	4 cut(s)	547, 995, 1008, 1154
BspT107I	GGYRCC	1 cut(s)	620
BspTNI	GGTCTC	1 cut(s)	966
BsrI	ACTGG	5 cut(s)	178, 596, 759, 1025, 1163
BssECI	CCNNGG	2 cut(s)	409, 495
BssMI	GATC	6 cut(s)	394, 502, 539, 1000, 1147, 1159
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	743, 944
Bst4CI	ACNGT	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBAI	YACGTR	1 cut(s)	801
BstC8I	GCNNGC	3 cut(s)	244, 248, 252
BstDEI	CTNAG	2 cut(s)	21, 446
BstF5I	GGATG	5 cut(s)	178, 196, 410, 718, 1133
BstH2I	RGCGCY	1 cut(s)	1121
BstHHI	GCGC	1 cut(s)	1120
BstKTI	GATC	6 cut(s)	397, 505, 542, 1003, 1150, 1162
BstMAI	GTCTC	2 cut(s)	966, 1245
BstMBI	GATC	6 cut(s)	394, 502, 539, 1000, 1147, 1159
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 278, 318, 620, 1058, 1087
BstNI	CCWGG	2 cut(s)	743, 944
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	741, 942
BstSLI	GKGCMC	3 cut(s)	256, 800, 817
BstV1I	GCAGC	7 cut(s)	2, 293, 400, 670, 1045, 1090, 1107
BstX2I	RGATCY	2 cut(s)	539, 1000
BstYI	RGATCY	2 cut(s)	539, 1000
BsuRI	GGCC	4 cut(s)	164, 741, 1093, 1243
BtgZI	GCGATG	1 cut(s)	1076
BtsCI	GGATG	5 cut(s)	178, 196, 410, 718, 1133
BtsIMutI	CAGTG	1 cut(s)	766
Cac8I	GCNNGC	3 cut(s)	244, 248, 252
CaiI	CAGNNNCTG	1 cut(s)	943
CfoI	GCGC	1 cut(s)	1120
Cfr13I	GGNCC	2 cut(s)	755, 1184
CseI	GACGC	1 cut(s)	451
CsiI	ACCWGGT	1 cut(s)	942
CspCI	CAANNNNNGTGG	2 cut(s)	978, 1013
CviAII	CATG	6 cut(s)	560, 647, 776, 829, 951, 964
DdeI	CTNAG	2 cut(s)	21, 446
DpnI	GATC	6 cut(s)	396, 504, 541, 1002, 1149, 1161
DpnII	GATC	6 cut(s)	394, 502, 539, 1000, 1147, 1159
DriI	GACNNNNNGTC	1 cut(s)	181
Eam1105I	GACNNNNNGTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	966
Eco47I	GGWCC	2 cut(s)	755, 1184
Eco47III	AGCGCT	1 cut(s)	1119
EcoO109I	RGGNCCY	1 cut(s)	755
EcoRII	CCWGG	2 cut(s)	741, 942
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	6 cut(s)	563, 650, 779, 832, 954, 967
FaqI	GGGAC	1 cut(s)	741
FatI	CATG	6 cut(s)	559, 646, 775, 828, 950, 963
FauI	CCCGC	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	1147
Fnu4HI	GCNGC	9 cut(s)	16, 282, 389, 624, 659, 1059, 1079, 1091, 1121
FokI	GGATG	5 cut(s)	185, 203, 417, 705, 1120
Fsp4HI	GCNGC	9 cut(s)	16, 282, 389, 624, 659, 1059, 1079, 1091, 1121
FspBI	CTAG	3 cut(s)	627, 786, 1255
GlaI	GCGC	1 cut(s)	1119
GluI	GCNGC	9 cut(s)	16, 282, 389, 624, 659, 1059, 1079, 1091, 1121
GsaI	CCCAGC	1 cut(s)	576
HaeII	RGCGCY	1 cut(s)	1121
HaeIII	GGCC	4 cut(s)	164, 741, 1093, 1243
HapII	CCGG	2 cut(s)	818, 976
HgaI	GACGC	1 cut(s)	451
HhaI	GCGC	1 cut(s)	1120
Hin1II	CATG	6 cut(s)	563, 650, 779, 832, 954, 967
Hin6I	GCGC	1 cut(s)	1118
HinP1I	GCGC	1 cut(s)	1118
HinfI	GANTC	1 cut(s)	486
HpaII	CCGG	2 cut(s)	818, 976
HphI	GGTGA	5 cut(s)	119, 561, 719, 1142, 1247
Hpy166II	GTNNAC	3 cut(s)	264, 343, 815
Hpy188I	TCNGA	6 cut(s)	307, 507, 733, 856, 932, 971
Hpy188III	TCNNGA	1 cut(s)	1073
Hpy8I	GTNNAC	3 cut(s)	264, 343, 815
HpyAV	CCTTC	4 cut(s)	40, 163, 317, 894
HpyCH4III	ACNGT	1 cut(s)	677
HpyCH4IV	ACGT	2 cut(s)	260, 800
HpyCH4V	TGCA	7 cut(s)	281, 559, 646, 658, 815, 1123, 1133
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 278, 318, 620, 1058, 1087
HpyF3I	CTNAG	2 cut(s)	21, 446
HpySE526I	ACGT	2 cut(s)	260, 800
Hsp92II	CATG	6 cut(s)	563, 650, 779, 832, 954, 967
HspAI	GCGC	1 cut(s)	1118
Ksp22I	TGATCA	1 cut(s)	1147
Kzo9I	GATC	6 cut(s)	394, 502, 539, 1000, 1147, 1159
LmnI	GCTCC	1 cut(s)	886
Lsp1109I	GCAGC	7 cut(s)	2, 293, 400, 670, 1045, 1090, 1107
LweI	GCATC	3 cut(s)	293, 395, 1142
MabI	ACCWGGT	1 cut(s)	942
MaeI	CTAG	3 cut(s)	627, 786, 1255
MaeII	ACGT	2 cut(s)	260, 800
MaeIII	GTNAC	4 cut(s)	677, 1016, 1111, 1235
MalI	GATC	6 cut(s)	396, 504, 541, 1002, 1149, 1161
MboI	GATC	6 cut(s)	394, 502, 539, 1000, 1147, 1159
MboII	GAAGA	3 cut(s)	619, 991, 1182
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	2 cut(s)	539, 1000
MhlI	GDGCHC	3 cut(s)	256, 800, 817
MluCI	AATT	8 cut(s)	51, 122, 295, 353, 363, 414, 422, 983
MmeI	TCCRAC	2 cut(s)	168, 249
MroXI	GAANNNNTTC	1 cut(s)	983
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	2 cut(s)	242, 841
MspI	CCGG	2 cut(s)	818, 976
MspR9I	CCNGG	2 cut(s)	743, 944
MunI	CAATTG	1 cut(s)	353
MvaI	CCWGG	2 cut(s)	743, 944
MwoI	GCNNNNNNNGC	6 cut(s)	12, 278, 318, 620, 1058, 1087
NdeII	GATC	6 cut(s)	394, 502, 539, 1000, 1147, 1159
NlaIII	CATG	6 cut(s)	563, 650, 779, 832, 954, 967
NlaIV	GGNNCC	5 cut(s)	223, 622, 757, 1002, 1185
NmeAIII	GCCGAG	1 cut(s)	520
NmuCI	GTSAC	3 cut(s)	677, 1016, 1235
NspI	RCATGY	1 cut(s)	563
PdmI	GAANNNNTTC	1 cut(s)	983
PfeI	GAWTC	1 cut(s)	486
PkrI	GCNGC	9 cut(s)	17, 283, 390, 625, 660, 1060, 1080, 1092, 1122
Ppu21I	YACGTR	1 cut(s)	801
PpuMI	RGGWCCY	1 cut(s)	755
PshBI	ATTAAT	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	755
Psp6I	CCWGG	2 cut(s)	741, 942
PspFI	CCCAGC	1 cut(s)	572
PspGI	CCWGG	2 cut(s)	741, 942
PspN4I	GGNNCC	5 cut(s)	223, 622, 757, 1002, 1185
PspPI	GGNCC	2 cut(s)	755, 1184
PspPPI	RGGWCCY	1 cut(s)	755
PstNI	CAGNNNCTG	1 cut(s)	943
PsuI	RGATCY	2 cut(s)	539, 1000
PvuII	CAGCTG	1 cut(s)	841
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	9 cut(s)	16, 282, 389, 624, 659, 1059, 1079, 1091, 1121
Sau3AI	GATC	6 cut(s)	394, 502, 539, 1000, 1147, 1159
Sau96I	GGNCC	2 cut(s)	755, 1184
ScrFI	CCNGG	2 cut(s)	743, 944
SduI	GDGCHC	3 cut(s)	256, 800, 817
SexAI	ACCWGGT	1 cut(s)	942
SfaNI	GCATC	3 cut(s)	293, 395, 1142
SinI	GGWCC	2 cut(s)	755, 1184
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	1174
SmoI	CTYRAG	1 cut(s)	1174
Sse9I	AATT	8 cut(s)	51, 122, 295, 353, 363, 414, 422, 983
SsiI	CCGC	4 cut(s)	240, 250, 624, 1090
SspMI	CTAG	3 cut(s)	627, 786, 1255
StyD4I	CCNGG	2 cut(s)	741, 942
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	677
TaiI	ACGT	2 cut(s)	263, 803
TaqI	TCGA	2 cut(s)	432, 692
TasI	AATT	8 cut(s)	51, 122, 295, 353, 363, 414, 422, 983
TauI	GCSGC	2 cut(s)	626, 1093
TfiI	GAWTC	1 cut(s)	486
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	3 cut(s)	677, 1016, 1235
TseI	GCWGC	7 cut(s)	15, 281, 388, 658, 1058, 1078, 1120
Tsp45I	GTSAC	3 cut(s)	677, 1016, 1235
TspDTI	ATGAA	2 cut(s)	537, 620
TspGWI	ACGGA	1 cut(s)	993
TspRI	CASTG	1 cut(s)	766
VneI	GTGCAC	1 cut(s)	813
VpaK11BI	GGWCC	2 cut(s)	755, 1184
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	2 cut(s)	422, 983
XceI	RCATGY	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	983
XspI	CTAG	3 cut(s)	627, 786, 1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.