Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008925

Physical Location & Seq

Genomic Coordinates Forward (+)

12249649 .. 12251729

Gene Structure 2081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGGATGTTTCGGACGCACTCCGAAATCGAACAAACGATCAGATACCAAAACCACGAAGAACAACGATTTCACCCCAAAAAAACTCACCGTCAATGCAAATCGAGATAAGCTGACACAACCCAGCTCAGATTGTTTAAAAGTTAGTATATGTGGAGATGTAAGCAAGGAGATAGTTACTAAGAAGGATCAATTAGCTTTGGATGCTAAAGATACTAATGTTGAAGATGAAGTTATAGTGAAGAAAGCACAGACTTTTACATTTGAAGAACTCTCTGTTTCTACTGGAAACTTTAAGTCGGATTGTTTTCTAGGAGAAGGAGGTTTTGGAAAAGTTTACAAAGGTTTCATTGAGAAAATCAATCAGGTTGTTGCAATTAAGCAACTTGATCGGAATGGTGCTCAAGGAATCAGGGAGTTTGTTGTTGAAGTGTTGACATTAAGTCTCGCTGATCATCCAAATCTCGTCAAGCTTATAGGATTTTGCGCTGAGGGTGTTCAGAGACTGTTGGTTTACGAGTATATGCCTCTAGGATCTCTGGATAATCACCTTCATGATCTTCCTTCTGGTAAAAACCCGCTTGCTTGGAACACTCGAATGAAAATAGCGGCTGGTGCAGCAAGAGGACTAGAGTATCTCCACGATACAATGAAACCTCCTGTGATATACCGTGATCTTAAGTGTTCGAATATCTTGATCGATGAAGGATATCACGCAAAACTCTCAGACTTTGGATTAGCTAAAGTAGGACCAAGAGGAAGTGAAACTCATGTTTCCACAAGAGTTATGGGAACATACGGTTACTGTGCTCCTGATTACGCATTAACTGGACAACTCACATTCAAATCAGATGTATACAGTTTCGGAGTTGTTCTTTTGGAGCTTATTACTGGAAGGAAAGCTTACGATAACACGAGAACACGTAATCACCAGAGTCTTGTTGAATGGGCAAATCCCTTGTTTAAAGATAGGAAGAATTTCAAGAAAATGGTTGATCCGTTACTCGAAGGAGATTATCCGGTTAGAGGATTGTATCAAGCACTTGCAATAGCTGCAATGTGTGTTCAAGAACAGCCTAGTATGAGACCGGTGATAGCTGATGTAGTAATGGCTTTGGATCACTTAGCTTCTTCTAAATATGATCGTAGTCACCGTCAAAAGCAGGATAATGTGACCGAGACTAAAGTCGATGAAGAGAAAACACTTACCACAGAATCTAATGTTTGTGTGGAGGAGAAACAAGAGATCAAGATATGCTCAGATCAAGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

424

Amino Acids

47.28

Weight (kDa)

7.93

Isoelectric Point (pI)

22.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	103 - 322	1e-44	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	103 - 367	4.1e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07870 AT1G07870 AT2G28590 AT2G28590
fragaria_vesca	FvH4_3g34150 FvH4_3g34150 FvH4_3g34150 FvH4_3g34150
malus_domestica	MD03G1107300.v1.1 MD11G1120000.v1.1
prunus_persica	Prupe.6G090100_v2.0.a1 Prupe.6G090100_v2.0.a1
pyrus_communis	pycom03g08680 pycom11g10140
rosa_chinensis	RchiOBHm_Chr5g0061791
rosa_laevigata	RLG00000035506
rosa_multiflora	Rmu_ssc0000275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018940
rosa_rugosa	Rorug05G0343900 Rorug05G0344000
rosa_samantha	Rh5AG404800
rosa_wichuraiana	Rw5G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	855
AciI	CCGC	2 cut(s)	578, 608
AclWI	GGATC	4 cut(s)	195, 541, 989, 1125
AcsI	RAATTY	1 cut(s)	976
AfiI	CCNNNNNNNGG	1 cut(s)	1025
AflII	CTTAAG	1 cut(s)	677
AflIII	ACRYGT	1 cut(s)	920
AgeI	ACCGGT	1 cut(s)	1087
AgsI	TTSAA	7 cut(s)	224, 266, 428, 844, 944, 982, 1067
AhdI	GACNNNNNGTC	1 cut(s)	441
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
Alw21I	GWGCWC	2 cut(s)	403, 811
Alw26I	GTCTC	4 cut(s)	449, 496, 1078, 1172
AlwI	GGATC	4 cut(s)	195, 541, 989, 1125
AlwNI	CAGNNNCTG	1 cut(s)	505
ApeKI	GCWGC	2 cut(s)	617, 1052
ApoI	RAATTY	1 cut(s)	976
AsiGI	ACCGGT	1 cut(s)	1087
Asp700I	GAANNNNTTC	1 cut(s)	977
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	749
AsuHPI	GGTGA	6 cut(s)	64, 79, 539, 920, 1102, 1142
AsuII	TTCGAA	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	749
BaeI	ACNNNNGTAYC	4 cut(s)	204, 237, 617, 650
BauI	CACGAG	1 cut(s)	913
Bbv12I	GWGCWC	2 cut(s)	403, 811
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	629, 1039
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BclI	TGATCA	1 cut(s)	451
BcoDI	GTCTC	4 cut(s)	449, 496, 1078, 1172
BfaI	CTAG	4 cut(s)	311, 530, 629, 1077
BfrI	CTTAAG	1 cut(s)	677
BisI	GCNGC	3 cut(s)	609, 618, 1053
BlsI	GCNGC	3 cut(s)	610, 619, 1054
Bme18I	GGWCC	1 cut(s)	749
BmeRI	GACNNNNNGTC	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	749
BmsI	GCATC	1 cut(s)	193
BoxI	GACNNNNGTC	1 cut(s)	1184
Bpu10I	CCTNAGC	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	387
Bsa29I	ATCGAT	1 cut(s)	699
BsaAI	YACGTR	1 cut(s)	923
BsaI	GGTCTC	1 cut(s)	1078
BsaWI	WCCGGW	2 cut(s)	1018, 1087
Bsc4I	CCNNNNNNNGG	1 cut(s)	1025
Bse118I	RCCGGY	1 cut(s)	1087
Bse1I	ACTGG	3 cut(s)	289, 832, 895
Bse3DI	GCAATG	1 cut(s)	1062
BseCI	ATCGAT	1 cut(s)	699
BseGI	GGATG	3 cut(s)	11, 208, 454
BseLI	CCNNNNNNNGG	1 cut(s)	1025
BseMI	GCAATG	1 cut(s)	1062
BseMII	CTCAG	4 cut(s)	141, 480, 738, 1272
BseNI	ACTGG	3 cut(s)	289, 832, 895
BseRI	GAGGAG	1 cut(s)	1247
BseXI	GCAGC	2 cut(s)	629, 1039
BseYI	CCCAGC	1 cut(s)	122
BsgI	GTGCAG	1 cut(s)	636
BshTI	ACCGGT	1 cut(s)	1087
BshVI	ATCGAT	1 cut(s)	699
BsiHKAI	GWGCWC	2 cut(s)	403, 811
BsiSI	CCGG	2 cut(s)	1019, 1088
BslI	CCNNNNNNNGG	1 cut(s)	1025
BsmAI	GTCTC	4 cut(s)	449, 496, 1078, 1172
Bso31I	GGTCTC	1 cut(s)	1078
Bsp119I	TTCGAA	1 cut(s)	686
Bsp1286I	GDGCHC	2 cut(s)	403, 811
BspACI	CCGC	2 cut(s)	578, 608
BspCNI	CTCAG	4 cut(s)	140, 481, 737, 1271
BspDI	ATCGAT	1 cut(s)	699
BspHI	TCATGA	1 cut(s)	553
BspPI	GGATC	4 cut(s)	195, 541, 989, 1125
BspT104I	TTCGAA	1 cut(s)	686
BspTI	CTTAAG	1 cut(s)	677
BspTNI	GGTCTC	1 cut(s)	1078
BsrDI	GCAATG	1 cut(s)	1062
BsrFI	RCCGGY	1 cut(s)	1087
BsrI	ACTGG	3 cut(s)	289, 832, 895
BssAI	RCCGGY	1 cut(s)	1087
BssNAI	GTATAC	1 cut(s)	856
BssSI	CACGAG	1 cut(s)	913
Bst1107I	GTATAC	1 cut(s)	856
Bst2BI	CACGAG	1 cut(s)	913
Bst4CI	ACNGT	7 cut(s)	91, 507, 671, 800, 806, 860, 1154
Bst6I	CTCTTC	1 cut(s)	1188
BstAFI	CTTAAG	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	1052
BstBAI	YACGTR	1 cut(s)	923
BstBI	TTCGAA	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	582
BstDEI	CTNAG	6 cut(s)	127, 180, 489, 724, 1123, 1258
BstF5I	GGATG	3 cut(s)	11, 208, 454
BstHHI	GCGC	1 cut(s)	488
BstMAI	GTCTC	4 cut(s)	449, 496, 1078, 1172
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 614, 617, 1052
BstPAI	GACNNNNGTC	1 cut(s)	1184
BstV1I	GCAGC	2 cut(s)	629, 1039
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BstZ17I	GTATAC	1 cut(s)	856
Bsu15I	ATCGAT	1 cut(s)	699
BsuTUI	ATCGAT	1 cut(s)	699
BtsCI	GGATG	3 cut(s)	11, 208, 454
Cac8I	GCNNGC	1 cut(s)	582
CaiI	CAGNNNCTG	1 cut(s)	505
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	1087
Cfr13I	GGNCC	1 cut(s)	749
ClaI	ATCGAT	1 cut(s)	699
CseI	GACGC	1 cut(s)	24
CspAI	ACCGGT	1 cut(s)	1087
CviAII	CATG	2 cut(s)	554, 770
DdeI	CTNAG	6 cut(s)	127, 180, 489, 724, 1123, 1258
DraI	TTTAAA	2 cut(s)	138, 964
DriI	GACNNNNNGTC	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	1188
Eam1105I	GACNNNNNGTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	1188
Eco31I	GGTCTC	1 cut(s)	1078
Eco32I	GATATC	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	749
EcoRV	GATATC	1 cut(s)	710
FaeI	CATG	2 cut(s)	557, 773
FalI	AAGNNNNNCTT	2 cut(s)	886, 918
FatI	CATG	2 cut(s)	553, 769
FauI	CCCGC	1 cut(s)	585
FbaI	TGATCA	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	855
Fnu4HI	GCNGC	3 cut(s)	609, 618, 1053
FokI	GGATG	3 cut(s)	18, 215, 441
Fsp4HI	GCNGC	3 cut(s)	609, 618, 1053
FspBI	CTAG	4 cut(s)	311, 530, 629, 1077
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	3 cut(s)	609, 618, 1053
GsaI	CCCAGC	1 cut(s)	126
HapII	CCGG	2 cut(s)	1019, 1088
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	2 cut(s)	557, 773
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	2 cut(s)	470, 900
HinfI	GANTC	3 cut(s)	408, 934, 1214
HpaII	CCGG	2 cut(s)	1019, 1088
HphI	GGTGA	6 cut(s)	64, 79, 539, 920, 1102, 1142
Hpy166II	GTNNAC	4 cut(s)	337, 435, 514, 856
Hpy188III	TCNNGA	8 cut(s)	104, 539, 554, 694, 812, 982, 1067, 1249
Hpy8I	GTNNAC	4 cut(s)	337, 435, 514, 856
HpyAV	CCTTC	7 cut(s)	178, 311, 560, 573, 698, 888, 1001
HpyCH4III	ACNGT	7 cut(s)	91, 507, 671, 800, 806, 860, 1154
HpyCH4IV	ACGT	1 cut(s)	922
HpyCH4V	TGCA	5 cut(s)	98, 374, 617, 1046, 1055
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 614, 617, 1052
HpyF3I	CTNAG	6 cut(s)	127, 180, 489, 724, 1123, 1258
HpySE526I	ACGT	1 cut(s)	922
Hsp92II	CATG	2 cut(s)	557, 773
HspAI	GCGC	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	451
LmnI	GCTCC	2 cut(s)	814, 880
Lsp1109I	GCAGC	2 cut(s)	629, 1039
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	4 cut(s)	311, 530, 629, 1077
MaeII	ACGT	1 cut(s)	922
MaeIII	GTNAC	5 cut(s)	175, 800, 999, 1148, 1171
MboII	GAAGA	8 cut(s)	70, 236, 253, 278, 551, 985, 1122, 1205
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	2 cut(s)	403, 811
MluCI	AATT	3 cut(s)	191, 375, 976
MlyI	GAGTC	1 cut(s)	943
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	8 cut(s)	314, 484, 537, 617, 666, 749, 1019, 1225
MroXI	GAANNNNTTC	1 cut(s)	977
MseI	TTAA	8 cut(s)	137, 294, 378, 440, 678, 824, 963, 1273
MslI	CAYNNNNRTG	2 cut(s)	552, 596
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	2 cut(s)	1019, 1088
MwoI	GCNNNNNNNGC	4 cut(s)	203, 614, 617, 1052
NlaIII	CATG	2 cut(s)	557, 773
NmuCI	GTSAC	2 cut(s)	1148, 1171
NspV	TTCGAA	1 cut(s)	686
PagI	TCATGA	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	1 cut(s)	1150
PdmI	GAANNNNTTC	1 cut(s)	977
PfeI	GAWTC	2 cut(s)	408, 1214
PinAI	ACCGGT	1 cut(s)	1087
PkrI	GCNGC	3 cut(s)	610, 619, 1054
PleI	GAGTC	1 cut(s)	942
PpsI	GAGTC	1 cut(s)	942
Ppu21I	YACGTR	1 cut(s)	923
PshAI	GACNNNNGTC	1 cut(s)	1184
PspFI	CCCAGC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	749
PstNI	CAGNNNCTG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	533
RseI	CAYNNNNRTG	2 cut(s)	552, 596
SaqAI	TTAA	8 cut(s)	137, 294, 378, 440, 678, 824, 963, 1273
SatI	GCNGC	3 cut(s)	609, 618, 1053
Sau96I	GGNCC	1 cut(s)	749
SchI	GAGTC	1 cut(s)	943
SduI	GDGCHC	2 cut(s)	403, 811
SfaNI	GCATC	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	686
SinI	GGWCC	1 cut(s)	749
SmiMI	CAYNNNNRTG	2 cut(s)	552, 596
SmlI	CTYRAG	2 cut(s)	402, 677
SmoI	CTYRAG	2 cut(s)	402, 677
Sse9I	AATT	3 cut(s)	191, 375, 976
SsiI	CCGC	2 cut(s)	578, 608
SspMI	CTAG	4 cut(s)	311, 530, 629, 1077
TaaI	ACNGT	7 cut(s)	91, 507, 671, 800, 806, 860, 1154
TaiI	ACGT	1 cut(s)	925
TaqI	TCGA	7 cut(s)	29, 103, 595, 686, 699, 1005, 1188
TaqII	GACCGA	1 cut(s)	1190
TasI	AATT	3 cut(s)	191, 375, 976
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	2 cut(s)	408, 1214
Tru1I	TTAA	8 cut(s)	137, 294, 378, 440, 678, 824, 963, 1273
Tru9I	TTAA	8 cut(s)	137, 294, 378, 440, 678, 824, 963, 1273
TseFI	GTSAC	2 cut(s)	1148, 1171
TseI	GCWGC	2 cut(s)	617, 1052
Tsp45I	GTSAC	2 cut(s)	1148, 1171
TspDTI	ATGAA	7 cut(s)	243, 337, 542, 614, 665, 717, 1206
TspGWI	ACGGA	1 cut(s)	987
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	749
XapI	RAATTY	1 cut(s)	976
XcmI	CCANNNNNNNNNTGG	1 cut(s)	784
XmiI	GTMKAC	1 cut(s)	855
XmnI	GAANNNNTTC	1 cut(s)	977
XspI	CTAG	4 cut(s)	311, 530, 629, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.