Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008925

Physical Location & Seq

Genomic Coordinates Reverse (-)

8485068 .. 8487646

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g10140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGAGCTGCTTTTGCTGGTCGAAGAAATCAACCAAAGAATCAGAGAAGAAAACTACCCATTTCAACACCAACAAACCCAATCATCAAGTGAATACGAATGGGAATGTGAAAAAAGAATTGGGTGTGAAAAAGGAACTGGGTATAAAAAAGGAGGAGGCGATGAAGGATGACCAGTTGTCGTTGGATGTAAAGGAGTTGAAAATAATAGAGGGTTCCAACGATGGAAAAACCACTGGCAAGCGGGCACAGACATTTACATTTGCTGAACTTGCAGCAGCAACTGGCAATTTCAGGTCTGATTGCTTTGTAGGTGAAGGAGGATTTGGAAAAGTTTACAAGGGTTACTTGGAGAAAATTAATCAGGATGTTGCTATTAAACAGCTTGATCGTAATGGATGCCAAGGACTTAGGGAATTTGTTGTCGAAGTATTGACGCTTAGTTTGGCTGACCACCCTAATCTTGTCAAACTGCTTGGATTCTGCGCCGAGGGAGAGCAGAGGCTATTGGTTTATGAATATATGCCATTAGGATCTTTGGAAAACCATTTGCATGGTCTTTCGCCCGGAAGTAAGGTGCTTGACTGGAATACAAGAATGAAGATAGCAGCTGGTGCTGCGAGGGGTTTAGAGTATCTGCATGAGAAAATGCAGCCCCCTGTTATATACCGTGACCTGAAATGCTCAAACATTTTGCTTGGTGAGGGGTATCATCCAAAGCTTTCGGATTTTGGCTTGGCTAAAGTAGGTCCCAGTGGAGATAAAACTCATGTTTCTACTAGGGTTATGGGTACGTATGGGTATTGTGCACCGGATTATGCCATGACAGGTCAGCTGACTTTCAAATCAGATGTTTATAGCTTTGGGGTTGTTCTTTTGGAGCTTATCACAGGAAGGAAAGCTATTGATAATACAAAACCCGTCAGAGAGCAGAACCTGGTAGCATGGGCAAGACCCATGTTCAGAGACCGGAAGAAATTCTCATTAATGGTGGACCCGTTGCTTCAAGGTCAGTATCCAGTCAGGGGATTATACCAAGCTCTTGCCATTGCTGCGATGTGTGTTCAAGAGCAGCCCAATATGCGGCCTGTCATAACCGACATAGTTACAGCGCTGCATTACCTTGCATCCCAGAAATATGACCCCCGGATCGATCCAGGTCAAACCTCGAAAAGGGGTCCATCTTCTCCAAGATTGAAGAGTGATGATGATATAACGCAGATTGGAGGTGACAGGCCAGAGAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

416

Amino Acids

46.23

Weight (kDa)

8.95

Isoelectric Point (pI)

23.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07870 AT1G07870 AT2G28590 AT2G28590
fragaria_vesca	FvH4_3g34150 FvH4_3g34150 FvH4_3g34150 FvH4_3g34150
malus_domestica	MD03G1107300.v1.1 MD11G1120000.v1.1
prunus_persica	Prupe.6G090100_v2.0.a1 Prupe.6G090100_v2.0.a1
pyrus_communis	pycom03g08680 pycom11g10140
rosa_chinensis	RchiOBHm_Chr5g0061791
rosa_laevigata	RLG00000035506
rosa_multiflora	Rmu_ssc0000275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018940
rosa_rugosa	Rorug05G0343900 Rorug05G0344000
rosa_samantha	Rh5AG404800
rosa_wichuraiana	Rw5G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	241, 1081
AclWI	GGATC	3 cut(s)	538, 1145, 1154
AcsI	RAATTY	2 cut(s)	413, 974
AfaI	GTAC	1 cut(s)	790
AfeI	AGCGCT	1 cut(s)	1110
AfiI	CCNNNNNNNGG	3 cut(s)	1022, 1080, 1170
AgsI	TTSAA	6 cut(s)	64, 199, 841, 1004, 1064, 1195
AhdI	GACNNNNNGTC	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	933, 1153
AjuI	GAANNNNNNNTTGG	4 cut(s)	101, 133, 306, 338
AluBI	AGCT	9 cut(s)	6, 382, 608, 718, 832, 858, 880, 899, 1037
AluI	AGCT	9 cut(s)	6, 382, 608, 718, 832, 858, 880, 899, 1037
Alw21I	GWGCWC	1 cut(s)	808
Alw26I	GTCTC	2 cut(s)	957, 1236
Alw44I	GTGCAC	1 cut(s)	804
AlwI	GGATC	3 cut(s)	538, 1145, 1154
AlwNI	CAGNNNCTG	2 cut(s)	281, 934
Aor51HI	AGCGCT	1 cut(s)	1110
AoxI	GGCC	2 cut(s)	1082, 1232
ApaLI	GTGCAC	1 cut(s)	804
ApeKI	GCWGC	9 cut(s)	6, 272, 275, 605, 614, 649, 1049, 1069, 1111
ApoI	RAATTY	2 cut(s)	413, 974
ArsI	GACNNNNNNTTYG	2 cut(s)	424, 456
AseI	ATTAAT	2 cut(s)	357, 983
Asp700I	GAANNNNTTC	1 cut(s)	974
AspLEI	GCGC	2 cut(s)	485, 1111
AspS9I	GGNCC	3 cut(s)	746, 991, 1175
AsuC2I	CCSGG	2 cut(s)	564, 1144
AsuHPI	GGTGA	3 cut(s)	323, 710, 1238
AvaII	GGWCC	3 cut(s)	746, 991, 1175
BaeGI	GKGCMC	2 cut(s)	247, 808
Bbv12I	GWGCWC	1 cut(s)	808
BbvI	GCAGC	8 cut(s)	284, 287, 601, 617, 661, 1036, 1081, 1098
BccI	CCATC	2 cut(s)	215, 1186
BciT130I	CCWGG	2 cut(s)	935, 1155
BciVI	GTATCC	1 cut(s)	1023
BcnI	CCSGG	2 cut(s)	564, 1144
BcoDI	GTCTC	2 cut(s)	957, 1236
BfaI	CTAG	1 cut(s)	777
BfoI	RGCGCY	1 cut(s)	1112
BfuI	GTATCC	1 cut(s)	1023
Bme1390I	CCNGG	4 cut(s)	564, 935, 1144, 1155
Bme18I	GGWCC	3 cut(s)	746, 991, 1175
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmgT120I	GGNCC	3 cut(s)	746, 991, 1175
BmiI	GGNNCC	4 cut(s)	214, 748, 993, 1176
BmrFI	CCNGG	4 cut(s)	564, 935, 1144, 1155
BmrI	ACTGGG	2 cut(s)	146, 744
BmsI	GCATC	2 cut(s)	386, 1133
BmuI	ACTGGG	2 cut(s)	146, 744
BpuMI	CCSGG	2 cut(s)	564, 1144
Bsa29I	ATCGAT	1 cut(s)	1149
BsaAI	YACGTR	1 cut(s)	792
BsaI	GGTCTC	1 cut(s)	957
BsaJI	CCNNGG	3 cut(s)	400, 486, 1142
BsaWI	WCCGGW	2 cut(s)	808, 966
Bsc4I	CCNNNNNNNGG	3 cut(s)	1022, 1080, 1170
Bse1I	ACTGG	7 cut(s)	141, 172, 238, 286, 587, 750, 1016
Bse3DI	GCAATG	1 cut(s)	1044
BseBI	CCWGG	2 cut(s)	935, 1155
BseCI	ATCGAT	1 cut(s)	1149
BseDI	CCNNGG	3 cut(s)	400, 486, 1142
BseGI	GGATG	6 cut(s)	172, 190, 370, 401, 709, 1124
BseLI	CCNNNNNNNGG	3 cut(s)	1022, 1080, 1170
BseMI	GCAATG	1 cut(s)	1044
BseNI	ACTGG	7 cut(s)	141, 172, 238, 286, 587, 750, 1016
BseRI	GAGGAG	1 cut(s)	167
BseSI	GKGCMC	2 cut(s)	247, 808
BseXI	GCAGC	8 cut(s)	284, 287, 601, 617, 661, 1036, 1081, 1098
BshFI	GGCC	2 cut(s)	1084, 1234
BshVI	ATCGAT	1 cut(s)	1149
BsiHKAI	GWGCWC	1 cut(s)	808
BsiSI	CCGG	4 cut(s)	564, 809, 967, 1144
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	3 cut(s)	1022, 1080, 1170
BsmAI	GTCTC	2 cut(s)	957, 1236
BsmFI	GGGAC	1 cut(s)	732
BsnI	GGCC	2 cut(s)	1084, 1234
Bso31I	GGTCTC	1 cut(s)	957
Bsp1286I	GDGCHC	2 cut(s)	247, 808
Bsp143I	GATC	4 cut(s)	385, 530, 1146, 1150
BspACI	CCGC	2 cut(s)	241, 1081
BspANI	GGCC	2 cut(s)	1084, 1234
BspDI	ATCGAT	1 cut(s)	1149
BspLI	GGNNCC	4 cut(s)	214, 748, 993, 1176
BspPI	GGATC	3 cut(s)	538, 1145, 1154
BspTNI	GGTCTC	1 cut(s)	957
BsrDI	GCAATG	1 cut(s)	1044
BsrI	ACTGG	7 cut(s)	141, 172, 238, 286, 587, 750, 1016
BssECI	CCNNGG	3 cut(s)	400, 486, 1142
BssMI	GATC	4 cut(s)	385, 530, 1146, 1150
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	2 cut(s)	935, 1155
Bst4CI	ACNGT	1 cut(s)	668
Bst6I	CTCTTC	1 cut(s)	1190
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstBAI	YACGTR	1 cut(s)	792
BstC8I	GCNNGC	2 cut(s)	239, 243
BstDEI	CTNAG	2 cut(s)	407, 437
BstENI	CCTNNNNNAGG	1 cut(s)	1168
BstF5I	GGATG	6 cut(s)	172, 190, 370, 401, 709, 1124
BstH2I	RGCGCY	1 cut(s)	1112
BstHHI	GCGC	2 cut(s)	485, 1111
BstKTI	GATC	4 cut(s)	388, 533, 1149, 1153
BstMAI	GTCTC	2 cut(s)	957, 1236
BstMBI	GATC	4 cut(s)	385, 530, 1146, 1150
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 269, 611, 614, 1049, 1078
BstNI	CCWGG	2 cut(s)	935, 1155
BstSCI	CCNGG	4 cut(s)	562, 933, 1142, 1153
BstSLI	GKGCMC	2 cut(s)	247, 808
BstSNI	TACGTA	1 cut(s)	792
BstV1I	GCAGC	8 cut(s)	284, 287, 601, 617, 661, 1036, 1081, 1098
BstX2I	RGATCY	1 cut(s)	530
BstXI	CCANNNNNNTGG	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	530
Bsu15I	ATCGAT	1 cut(s)	1149
BsuI	GTATCC	1 cut(s)	1023
BsuRI	GGCC	2 cut(s)	1084, 1234
BsuTUI	ATCGAT	1 cut(s)	1149
BtgZI	GCGATG	2 cut(s)	173, 1067
BtsCI	GGATG	6 cut(s)	172, 190, 370, 401, 709, 1124
BtsIMutI	CAGTG	2 cut(s)	231, 757
Cac8I	GCNNGC	2 cut(s)	239, 243
CaiI	CAGNNNCTG	2 cut(s)	281, 934
CfoI	GCGC	2 cut(s)	485, 1111
Cfr13I	GGNCC	3 cut(s)	746, 991, 1175
ClaI	ATCGAT	1 cut(s)	1149
CseI	GACGC	1 cut(s)	442
CsiI	ACCWGGT	1 cut(s)	933
Csp6I	GTAC	1 cut(s)	789
CviAII	CATG	6 cut(s)	551, 638, 767, 820, 942, 955
CviQI	GTAC	1 cut(s)	789
DdeI	CTNAG	2 cut(s)	407, 437
DpnI	GATC	4 cut(s)	387, 532, 1148, 1152
DpnII	GATC	4 cut(s)	385, 530, 1146, 1150
DriI	GACNNNNNGTC	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	1190
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	1190
Eco105I	TACGTA	1 cut(s)	792
Eco130I	CCWWGG	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	957
Eco47I	GGWCC	3 cut(s)	746, 991, 1175
Eco47III	AGCGCT	1 cut(s)	1110
EcoNI	CCTNNNNNAGG	1 cut(s)	1168
EcoO109I	RGGNCCY	1 cut(s)	746
EcoRII	CCWGG	2 cut(s)	933, 1153
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	6 cut(s)	554, 641, 770, 823, 945, 958
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	6 cut(s)	550, 637, 766, 819, 941, 954
FauI	CCCGC	1 cut(s)	234
FokI	GGATG	6 cut(s)	179, 197, 377, 408, 696, 1111
FspBI	CTAG	1 cut(s)	777
GlaI	GCGC	2 cut(s)	484, 1110
HaeII	RGCGCY	1 cut(s)	1112
HaeIII	GGCC	2 cut(s)	1084, 1234
HapII	CCGG	4 cut(s)	564, 809, 967, 1144
HgaI	GACGC	1 cut(s)	442
HhaI	GCGC	2 cut(s)	485, 1111
Hin1II	CATG	6 cut(s)	554, 641, 770, 823, 945, 958
Hin6I	GCGC	2 cut(s)	483, 1109
HinP1I	GCGC	2 cut(s)	483, 1109
HindIII	AAGCTT	1 cut(s)	716
HinfI	GANTC	2 cut(s)	38, 477
HpaII	CCGG	4 cut(s)	564, 809, 967, 1144
HphI	GGTGA	3 cut(s)	323, 710, 1238
Hpy166II	GTNNAC	3 cut(s)	334, 806, 991
Hpy188I	TCNGA	6 cut(s)	43, 298, 724, 847, 923, 962
Hpy188III	TCNNGA	2 cut(s)	362, 1064
Hpy8I	GTNNAC	3 cut(s)	334, 806, 991
HpyAV	CCTTC	3 cut(s)	157, 308, 885
HpyCH4III	ACNGT	1 cut(s)	668
HpyCH4IV	ACGT	1 cut(s)	791
HpyCH4V	TGCA	7 cut(s)	272, 550, 637, 649, 806, 1114, 1124
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 269, 611, 614, 1049, 1078
HpyF3I	CTNAG	2 cut(s)	407, 437
HpySE526I	ACGT	1 cut(s)	791
Hsp92II	CATG	6 cut(s)	554, 641, 770, 823, 945, 958
HspAI	GCGC	2 cut(s)	483, 1109
Kzo9I	GATC	4 cut(s)	385, 530, 1146, 1150
LmnI	GCTCC	1 cut(s)	877
Lsp1109I	GCAGC	8 cut(s)	284, 287, 601, 617, 661, 1036, 1081, 1098
LweI	GCATC	2 cut(s)	386, 1133
MabI	ACCWGGT	1 cut(s)	933
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	1 cut(s)	791
MaeIII	GTNAC	4 cut(s)	341, 668, 1102, 1226
MalI	GATC	4 cut(s)	387, 532, 1148, 1152
MboI	GATC	4 cut(s)	385, 530, 1146, 1150
MboII	GAAGA	6 cut(s)	34, 58, 610, 982, 1173, 1207
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	2 cut(s)	247, 808
MluCI	AATT	5 cut(s)	116, 286, 354, 413, 974
MmeI	TCCRAC	2 cut(s)	162, 240
MroXI	GAANNNNTTC	1 cut(s)	974
MseI	TTAA	3 cut(s)	357, 375, 983
MslI	CAYNNNNRTG	1 cut(s)	549
MspA1I	CMGCKG	2 cut(s)	608, 832
MspI	CCGG	4 cut(s)	564, 809, 967, 1144
MspR9I	CCNGG	4 cut(s)	564, 935, 1144, 1155
MvaI	CCWGG	2 cut(s)	935, 1155
MwoI	GCNNNNNNNGC	6 cut(s)	12, 269, 611, 614, 1049, 1078
NciI	CCSGG	2 cut(s)	564, 1144
NdeII	GATC	4 cut(s)	385, 530, 1146, 1150
NlaIII	CATG	6 cut(s)	554, 641, 770, 823, 945, 958
NlaIV	GGNNCC	4 cut(s)	214, 748, 993, 1176
NmeAIII	GCCGAG	1 cut(s)	511
NmuCI	GTSAC	2 cut(s)	668, 1226
PdmI	GAANNNNTTC	1 cut(s)	974
PfeI	GAWTC	2 cut(s)	38, 477
Ppu21I	YACGTR	1 cut(s)	792
PpuMI	RGGWCCY	1 cut(s)	746
PshBI	ATTAAT	2 cut(s)	357, 983
Psp5II	RGGWCCY	1 cut(s)	746
Psp6I	CCWGG	2 cut(s)	933, 1153
PspGI	CCWGG	2 cut(s)	933, 1153
PspN4I	GGNNCC	4 cut(s)	214, 748, 993, 1176
PspPI	GGNCC	3 cut(s)	746, 991, 1175
PspPPI	RGGWCCY	1 cut(s)	746
PstNI	CAGNNNCTG	2 cut(s)	281, 934
PsuI	RGATCY	1 cut(s)	530
PvuII	CAGCTG	2 cut(s)	608, 832
RsaI	GTAC	1 cut(s)	790
RsaNI	GTAC	1 cut(s)	789
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	357, 375, 983
Sau3AI	GATC	4 cut(s)	385, 530, 1146, 1150
Sau96I	GGNCC	3 cut(s)	746, 991, 1175
ScrFI	CCNGG	4 cut(s)	564, 935, 1144, 1155
SduI	GDGCHC	2 cut(s)	247, 808
SexAI	ACCWGGT	1 cut(s)	933
SfaNI	GCATC	2 cut(s)	386, 1133
SinI	GGWCC	3 cut(s)	746, 991, 1175
SmiMI	CAYNNNNRTG	1 cut(s)	549
SnaBI	TACGTA	1 cut(s)	792
Sse9I	AATT	5 cut(s)	116, 286, 354, 413, 974
SsiI	CCGC	2 cut(s)	241, 1081
SspMI	CTAG	1 cut(s)	777
StyD4I	CCNGG	4 cut(s)	562, 933, 1142, 1153
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	668
TaiI	ACGT	1 cut(s)	794
TaqI	TCGA	4 cut(s)	20, 423, 1149, 1166
TasI	AATT	5 cut(s)	116, 286, 354, 413, 974
TauI	GCSGC	1 cut(s)	1084
TfiI	GAWTC	2 cut(s)	38, 477
Tru1I	TTAA	3 cut(s)	357, 375, 983
Tru9I	TTAA	3 cut(s)	357, 375, 983
TscAI	CASTG	2 cut(s)	238, 757
TseFI	GTSAC	2 cut(s)	668, 1226
TseI	GCWGC	9 cut(s)	6, 272, 275, 605, 614, 649, 1049, 1069, 1111
Tsp45I	GTSAC	2 cut(s)	668, 1226
TspDTI	ATGAA	3 cut(s)	176, 528, 611
TspRI	CASTG	2 cut(s)	238, 757
VneI	GTGCAC	1 cut(s)	804
VpaK11BI	GGWCC	3 cut(s)	746, 991, 1175
VspI	ATTAAT	2 cut(s)	357, 983
XagI	CCTNNNNNAGG	1 cut(s)	1168
XapI	RAATTY	2 cut(s)	413, 974
XmnI	GAANNNNTTC	1 cut(s)	974
XspI	CTAG	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.