Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008925

Physical Location & Seq

Genomic Coordinates Forward (+)

67421110 .. 67424825

Gene Structure 3716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33813

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGAGTTGCTTTTGCTGTAAAAAAAATTCAAAAAAAGAAGAAGAGAGGAACAATAAGAACAACAACAACAACACCCACATCAACGGTAGCAAATCAAATCGTCTAGATACTTCAAAAGTGAATTCAGAGGGGAATGTAAAAAGGGAATTGGGTGTAAAAAAGGAGGAGGTCTCTAAGGTTGACCAGTTATCAATCGATGTAAAGGAGTTGAACATAAACGAGGAGGTTTCTAAGGATGGAAAGACTAATGGCAGGCGGCCACAGGCATTTACGTTGGAGGAAATGGAAGTAGCAACCCAAAACTTCAGTCCTGACTGCTTTATAGGTGAAGGAGGATTCGGCAAAGTTTACAAGGGCCACTTAGAGAAAACTAACCAGGTTGTTGCTATCAAGCAGCTTGATCGCAATGGTTGCCAAGGGATCAGGGAATTTGTTGTTGAAGTATTGACGCTAGGTTTGGCAGATCATCAGAATCTTGTCAAATTGATTGGCTTTTGTGCTGAGGGGGATCAAAGGCTATTGGTTTATGAATATATGCCATTTGGATCTTTGGAAAACCATTTGCATGATCTTCAAGCTGGCAGGAATGTTCTGGATTGGAATACAAGAATGAAGATCGCAGCTGGTGCAGCAAGAGGTTTAGAGTATCTGCATGAGAAAATGCAGCCTGCTATCATATATCGCGACCTGAAATGCTCAAACATTTTGCTTGGTGAGGATTATCATCCAAAGCTATCTGATTTTGGCTTGGCCAAAGTAGGTCCGAGTGGAGATAAGACTCATGTTTCAACTAGGGTTATGGGAACATATGGGTACTGTGCACCAGATTATGCAATGACAGGTCAGCTGACTTTTAAATCAGATGTTTATAGCTTCGGGGTGGTTCTTTTGGAGCTTATTACAGGCCGAAAAGCTATTGATGGCACAAGACCTCTCAGGGAGCAAAACCTCGTAGCATGGGCAAGACCCTTGTTCAAAGACCGGAAGAAATTCTCACAGATGGTGGATCCGTTGCTCCAGGGTCAGTATCCTGTCAGGGGATTATACCAAGCTCTTGCTATTGCTGCGATGTGCGTTCAGGAGCAGCCTAATATGCGGCCTGTCATAACCGATATAGTGACAGCACTAAATTACCTTGCTTCCCAGAAATATGACCCCCAATTGCATCCAGTACAAAGCTCCAGAAGGAGTCCATCTTCTCCTAGAGTGAGAAAAGATGATAATATGAGTAGGAATGCGGGTAATGGGCCAGAGAGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

420

Amino Acids

47.13

Weight (kDa)

8.78

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	107 - 373	1e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	108 - 375	6.8e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07870 AT1G07870 AT2G28590 AT2G28590
fragaria_vesca	FvH4_3g34150 FvH4_3g34150 FvH4_3g34150 FvH4_3g34150
malus_domestica	MD03G1107300.v1.1 MD11G1120000.v1.1
prunus_persica	Prupe.6G090100_v2.0.a1 Prupe.6G090100_v2.0.a1
pyrus_communis	pycom03g08680 pycom11g10140
rosa_chinensis	RchiOBHm_Chr5g0061791
rosa_laevigata	RLG00000035506
rosa_multiflora	Rmu_ssc0000275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018940
rosa_rugosa	Rorug05G0343900 Rorug05G0344000
rosa_samantha	Rh5AG404800
rosa_wichuraiana	Rw5G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	684
AciI	CCGC	3 cut(s)	256, 1096, 1238
AclWI	GGATC	5 cut(s)	428, 516, 553, 1001, 1014
AcoI	YGGCCR	2 cut(s)	257, 750
AcsI	RAATTY	4 cut(s)	25, 121, 428, 989
AcuI	CTGAAG	1 cut(s)	289
AfaI	GTAC	2 cut(s)	815, 1173
AfiI	CCNNNNNNNGG	1 cut(s)	1037
AgsI	TTSAA	7 cut(s)	30, 114, 211, 440, 575, 789, 976
AjnI	CCWGG	2 cut(s)	375, 1017
Alw21I	GWGCWC	1 cut(s)	823
Alw26I	GTCTC	2 cut(s)	175, 1251
Alw44I	GTGCAC	1 cut(s)	819
AlwI	GGATC	5 cut(s)	428, 516, 553, 1001, 1014
AoxI	GGCC	6 cut(s)	257, 355, 750, 904, 1097, 1247
ApaLI	GTGCAC	1 cut(s)	819
ApeKI	GCWGC	6 cut(s)	394, 620, 629, 664, 1064, 1084
ApoI	RAATTY	4 cut(s)	25, 121, 428, 989
ArsI	GACNNNNNNTTYG	4 cut(s)	292, 324, 439, 471
Asp700I	GAANNNNTTC	1 cut(s)	989
AspS9I	GGNCC	3 cut(s)	355, 761, 1247
AsuHPI	GGTGA	2 cut(s)	338, 725
AvaII	GGWCC	1 cut(s)	761
BaeGI	GKGCMC	1 cut(s)	823
BalI	TGGCCA	1 cut(s)	752
BamHI	GGATCC	1 cut(s)	1006
Bbv12I	GWGCWC	1 cut(s)	823
BbvCI	CCTCAGC	1 cut(s)	501
BbvI	GCAGC	6 cut(s)	406, 632, 641, 676, 1051, 1096
BccI	CCATC	4 cut(s)	230, 914, 994, 1201
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	2 cut(s)	377, 1019
BciVI	GTATCC	1 cut(s)	1038
BcoDI	GTCTC	2 cut(s)	175, 1251
BfaI	CTAG	4 cut(s)	104, 452, 792, 1203
BfuI	GTATCC	1 cut(s)	1038
BisI	GCNGC	8 cut(s)	257, 395, 621, 630, 665, 1065, 1085, 1097
BlsI	GCNGC	8 cut(s)	258, 396, 622, 631, 666, 1066, 1086, 1098
Bme1390I	CCNGG	2 cut(s)	377, 1019
Bme18I	GGWCC	1 cut(s)	761
BmgT120I	GGNCC	3 cut(s)	355, 761, 1247
BmiI	GGNNCC	1 cut(s)	1008
BmrFI	CCNGG	2 cut(s)	377, 1019
BmsI	GCATC	1 cut(s)	1174
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	2 cut(s)	1001, 1165
Bpu10I	CCTNAGC	1 cut(s)	501
Bsa29I	ATCGAT	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	723
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	415, 1018
BsaWI	WCCGGW	1 cut(s)	981
Bsc4I	CCNNNNNNNGG	1 cut(s)	1037
Bse1I	ACTGG	2 cut(s)	184, 1169
Bse3DI	GCAATG	2 cut(s)	412, 840
Bse8I	GATNNNNATC	1 cut(s)	723
BseBI	CCWGG	2 cut(s)	377, 1019
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	2 cut(s)	415, 1018
BseGI	GGATG	3 cut(s)	241, 724, 1165
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	1 cut(s)	1037
BseMI	GCAATG	2 cut(s)	412, 840
BseMII	CTCAG	2 cut(s)	492, 949
BseNI	ACTGG	2 cut(s)	184, 1169
BseRI	GAGGAG	2 cut(s)	179, 236
BseSI	GKGCMC	1 cut(s)	823
BseXI	GCAGC	6 cut(s)	406, 632, 641, 676, 1051, 1096
BsgI	GTGCAG	1 cut(s)	648
Bsh1236I	CGCG	1 cut(s)	684
BshFI	GGCC	6 cut(s)	259, 357, 752, 906, 1099, 1249
BshVI	ATCGAT	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	823
BsiSI	CCGG	1 cut(s)	982
BslI	CCNNNNNNNGG	1 cut(s)	1037
BsmAI	GTCTC	2 cut(s)	175, 1251
BsmI	GAATGC	1 cut(s)	1240
BsnI	GGCC	6 cut(s)	259, 357, 752, 906, 1099, 1249
Bso31I	GGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	823
Bsp143I	GATC	8 cut(s)	400, 420, 463, 508, 545, 568, 615, 1006
Bsp68I	TCGCGA	1 cut(s)	684
BspACI	CCGC	3 cut(s)	256, 1096, 1238
BspANI	GGCC	6 cut(s)	259, 357, 752, 906, 1099, 1249
BspCNI	CTCAG	2 cut(s)	493, 948
BspDI	ATCGAT	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	684
BspLI	GGNNCC	1 cut(s)	1008
BspPI	GGATC	5 cut(s)	428, 516, 553, 1001, 1014
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	412, 840
BsrI	ACTGG	2 cut(s)	184, 1169
BssECI	CCNNGG	2 cut(s)	415, 1018
BssMI	GATC	8 cut(s)	400, 420, 463, 508, 545, 568, 615, 1006
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	2 cut(s)	377, 1019
Bst4CI	ACNGT	2 cut(s)	86, 818
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	2 cut(s)	411, 626
BstC8I	GCNNGC	3 cut(s)	254, 580, 669
BstDEI	CTNAG	5 cut(s)	174, 231, 361, 501, 935
BstF5I	GGATG	3 cut(s)	241, 724, 1165
BstFNI	CGCG	1 cut(s)	684
BstKTI	GATC	8 cut(s)	403, 423, 466, 511, 548, 571, 618, 1009
BstMAI	GTCTC	2 cut(s)	175, 1251
BstMBI	GATC	8 cut(s)	400, 420, 463, 508, 545, 568, 615, 1006
BstMWI	GCNNNNNNNGC	5 cut(s)	411, 626, 629, 1064, 1093
BstNI	CCWGG	2 cut(s)	377, 1019
BstSCI	CCNGG	2 cut(s)	375, 1017
BstSLI	GKGCMC	1 cut(s)	823
BstUI	CGCG	1 cut(s)	684
BstV1I	GCAGC	6 cut(s)	406, 632, 641, 676, 1051, 1096
BstX2I	RGATCY	2 cut(s)	545, 1006
BstYI	RGATCY	2 cut(s)	545, 1006
Bsu15I	ATCGAT	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	1038
BsuRI	GGCC	6 cut(s)	259, 357, 752, 906, 1099, 1249
BsuTUI	ATCGAT	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	1082
BtsCI	GGATG	3 cut(s)	241, 724, 1165
BtuMI	TCGCGA	1 cut(s)	684
Cac8I	GCNNGC	3 cut(s)	254, 580, 669
Cfr13I	GGNCC	3 cut(s)	355, 761, 1247
ClaI	ATCGAT	1 cut(s)	195
CseI	GACGC	1 cut(s)	457
CsiI	ACCWGGT	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	814, 1172
CviAII	CATG	4 cut(s)	566, 653, 782, 957
CviQI	GTAC	2 cut(s)	814, 1172
DdeI	CTNAG	5 cut(s)	174, 231, 361, 501, 935
DpnI	GATC	8 cut(s)	402, 422, 465, 510, 547, 570, 617, 1008
DpnII	GATC	8 cut(s)	400, 420, 463, 508, 545, 568, 615, 1006
DraI	TTTAAA	1 cut(s)	856
EaeI	YGGCCR	2 cut(s)	257, 750
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	415
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	761
Eco57I	CTGAAG	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	375, 1017
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	4 cut(s)	569, 656, 785, 960
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	4 cut(s)	565, 652, 781, 956
FauI	CCCGC	1 cut(s)	1231
FauNDI	CATATG	1 cut(s)	808
Fnu4HI	GCNGC	8 cut(s)	257, 395, 621, 630, 665, 1065, 1085, 1097
FokI	GGATG	3 cut(s)	248, 711, 1152
Fsp4HI	GCNGC	8 cut(s)	257, 395, 621, 630, 665, 1065, 1085, 1097
FspBI	CTAG	4 cut(s)	104, 452, 792, 1203
GluI	GCNGC	8 cut(s)	257, 395, 621, 630, 665, 1065, 1085, 1097
GsuI	CTGGAG	2 cut(s)	1001, 1165
HaeIII	GGCC	6 cut(s)	259, 357, 752, 906, 1099, 1249
HapII	CCGG	1 cut(s)	982
HgaI	GACGC	1 cut(s)	457
Hin1II	CATG	4 cut(s)	569, 656, 785, 960
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	4 cut(s)	336, 472, 778, 1189
HpaII	CCGG	1 cut(s)	982
HphI	GGTGA	2 cut(s)	338, 725
Hpy166II	GTNNAC	3 cut(s)	181, 349, 821
Hpy188I	TCNGA	5 cut(s)	127, 471, 739, 765, 862
Hpy188III	TCNNGA	6 cut(s)	104, 311, 593, 683, 1079, 1182
Hpy8I	GTNNAC	3 cut(s)	181, 349, 821
HpyAV	CCTTC	2 cut(s)	323, 1179
HpyCH4III	ACNGT	2 cut(s)	86, 818
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	7 cut(s)	565, 629, 652, 664, 821, 833, 1165
HpyF10VI	GCNNNNNNNGC	5 cut(s)	411, 626, 629, 1064, 1093
HpyF3I	CTNAG	5 cut(s)	174, 231, 361, 501, 935
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	4 cut(s)	569, 656, 785, 960
Kzo9I	GATC	8 cut(s)	400, 420, 463, 508, 545, 568, 615, 1006
LmnI	GCTCC	5 cut(s)	892, 940, 1020, 1081, 1184
Lsp1109I	GCAGC	6 cut(s)	406, 632, 641, 676, 1051, 1096
LweI	GCATC	1 cut(s)	1174
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	4 cut(s)	104, 452, 792, 1203
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	1117
MalI	GATC	8 cut(s)	402, 422, 465, 510, 547, 570, 617, 1008
MboI	GATC	8 cut(s)	400, 420, 463, 508, 545, 568, 615, 1006
MboII	GAAGA	6 cut(s)	50, 53, 563, 625, 997, 1188
MfeI	CAATTG	1 cut(s)	1160
MflI	RGATCY	2 cut(s)	545, 1006
MhlI	GDGCHC	1 cut(s)	823
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	8 cut(s)	25, 121, 146, 428, 482, 989, 1129, 1160
MluNI	TGGCCA	1 cut(s)	752
MlyI	GAGTC	2 cut(s)	772, 1198
MmeI	TCCRAC	1 cut(s)	255
Mox20I	TGGCCA	1 cut(s)	752
MroXI	GAANNNNTTC	1 cut(s)	989
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	1 cut(s)	855
MslI	CAYNNNNRTG	1 cut(s)	564
Msp20I	TGGCCA	1 cut(s)	752
MspA1I	CMGCKG	2 cut(s)	623, 847
MspI	CCGG	1 cut(s)	982
MspR9I	CCNGG	2 cut(s)	377, 1019
MunI	CAATTG	1 cut(s)	1160
Mva1269I	GAATGC	1 cut(s)	1240
MvaI	CCWGG	2 cut(s)	377, 1019
MvnI	CGCG	1 cut(s)	684
MwoI	GCNNNNNNNGC	5 cut(s)	411, 626, 629, 1064, 1093
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	8 cut(s)	400, 420, 463, 508, 545, 568, 615, 1006
NlaIII	CATG	4 cut(s)	569, 656, 785, 960
NlaIV	GGNNCC	1 cut(s)	1008
NmuCI	GTSAC	1 cut(s)	1117
NruI	TCGCGA	1 cut(s)	684
PctI	GAATGC	1 cut(s)	1240
PdmI	GAANNNNTTC	1 cut(s)	989
PfeI	GAWTC	2 cut(s)	336, 472
PkrI	GCNGC	8 cut(s)	258, 396, 622, 631, 666, 1066, 1086, 1098
PleI	GAGTC	2 cut(s)	772, 1197
PpsI	GAGTC	2 cut(s)	772, 1197
Psp6I	CCWGG	2 cut(s)	375, 1017
PspGI	CCWGG	2 cut(s)	375, 1017
PspN4I	GGNNCC	1 cut(s)	1008
PspPI	GGNCC	3 cut(s)	355, 761, 1247
PsuI	RGATCY	2 cut(s)	545, 1006
PvuII	CAGCTG	2 cut(s)	623, 847
RruI	TCGCGA	1 cut(s)	684
RsaI	GTAC	2 cut(s)	815, 1173
RsaNI	GTAC	2 cut(s)	814, 1172
RseI	CAYNNNNRTG	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	855
SatI	GCNGC	8 cut(s)	257, 395, 621, 630, 665, 1065, 1085, 1097
Sau3AI	GATC	8 cut(s)	400, 420, 463, 508, 545, 568, 615, 1006
Sau96I	GGNCC	3 cut(s)	355, 761, 1247
SchI	GAGTC	2 cut(s)	772, 1198
ScrFI	CCNGG	2 cut(s)	377, 1019
SduI	GDGCHC	1 cut(s)	823
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	1174
SinI	GGWCC	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	564
Sse9I	AATT	8 cut(s)	25, 121, 146, 428, 482, 989, 1129, 1160
SsiI	CCGC	3 cut(s)	256, 1096, 1238
SspMI	CTAG	4 cut(s)	104, 452, 792, 1203
StyD4I	CCNGG	2 cut(s)	375, 1017
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	86, 818
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	1 cut(s)	195
TasI	AATT	8 cut(s)	25, 121, 146, 428, 482, 989, 1129, 1160
TatI	WGTACW	1 cut(s)	1171
TauI	GCSGC	2 cut(s)	259, 1099
TfiI	GAWTC	2 cut(s)	336, 472
Tru1I	TTAA	1 cut(s)	855
Tru9I	TTAA	1 cut(s)	855
TseFI	GTSAC	1 cut(s)	1117
TseI	GCWGC	6 cut(s)	394, 620, 629, 664, 1064, 1084
Tsp45I	GTSAC	1 cut(s)	1117
TspDTI	ATGAA	2 cut(s)	543, 626
TspGWI	ACGGA	1 cut(s)	999
VneI	GTGCAC	1 cut(s)	819
VpaK11BI	GGWCC	1 cut(s)	761
XapI	RAATTY	4 cut(s)	25, 121, 428, 989
XbaI	TCTAGA	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	989
XspI	CTAG	4 cut(s)	104, 452, 792, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.