Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008925

Physical Location & Seq

Genomic Coordinates Forward (+)

67229047 .. 67232067

Gene Structure 3021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G038020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGAGTTGCTTTTGCTGTAAAAAAAATGCAAAAAAAGAAGAAGAGAGGAACAATAAGAACAACAACACCCACATCAACGGTAGCAAATCAAATCGTCTAGATACTTCAAAAGTGAATTCAGAGGGGAATGTAAAAAGGGAATTGGGTGTAAAAAAGGAGGAGGTCTCTAAGGTTGACCAGTTATCAATCGATGTAAAGGAGTTGAACATAAACCAGGAGGTTTCTAAGGATGGAAAGACTAATGGCAGGCGGCCACAGGCATTTACGTTGGAGGAAATGGAAGTAGCAACCCAAAACTTCAGTCCTGACTGCTTTATAGGTGAAGGAGGATTCGGCAAAGTTTACAAGGGCCACTTAGAGAAAACTAACCAGGTTGTTGCTATCAAGCAGCTTGATCGCAATGGTTGCCAAGGGATCAGGGAATTTGTTGTTGAAAATCTTGTCAAATTGATTGGCTTTTGTGCTGAGGGGGATCAAAGGCTATTGGTTTATGAATATATGCCATTTGGATCTTTGGAAAACCATTTGCATGATCTTCAAGCTGGCAGGAATGTTCTGGATTGGAATACAAGAATGAAGATCGCAGCTGGTGCAGCAAGAGGTTTAGAGTATCTGCATGAGAAAATGCAGCCTGCTATCATATATCGCGACCTGAAATGCTCAAACATTTTGCTCGGTGAGGATTATCATCCAAAGCTATCTGATTTTGGCTTGGCCAAAGTAGGTCCGAGTGGAGATAAGACTCATGTTTCAACTAGGGTTATGGGAACATATGGGTACTGTGCACCAGATTATGCAATGACAGGTCAGCTGACTTTTAAATCAGATGTTTATAGCTTCGGGGTGGTTCTTTTGGAGCTTATTACAGGCCGAAAAGCTATTGATGGCACAAGACCTCTGAGGGAGCAAAACCTTGTAGCATGGGCAAGACCCTTGTTCAGAGACCGGAAGAAATTCTCACAGATGGTGGATCCGTTGCTCCAGGGTCAGTATCCTGTCAGGGGATTATACCAAGCTCTTGCTATTGCTGCGATGTGCGTTCAGGAGCAGCCTAATATGCGGCCTGTCATAACCGATATAGTGACAGCACTAAATTACCTTGCTTCCCAGAAATATGACCCCCAATTTGATCCAGTACAAAGCTCCAGAAGGAGTCCATCTTCTCCTAAAGTGAGAAAAGATGATAATATGAGTAGGAATGCGGGTAATGGGCCAGAGAGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

408

Amino Acids

45.85

Weight (kDa)

8.87

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	105 - 361	1.9e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	106 - 363	1.9e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07870 AT1G07870 AT2G28590 AT2G28590
fragaria_vesca	FvH4_3g34150 FvH4_3g34150 FvH4_3g34150 FvH4_3g34150
malus_domestica	MD03G1107300.v1.1 MD11G1120000.v1.1
prunus_persica	Prupe.6G090100_v2.0.a1 Prupe.6G090100_v2.0.a1
pyrus_communis	pycom03g08680 pycom11g10140
rosa_chinensis	RchiOBHm_Chr5g0061791
rosa_laevigata	RLG00000035506
rosa_multiflora	Rmu_ssc0000275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018940
rosa_rugosa	Rorug05G0343900 Rorug05G0344000
rosa_samantha	Rh5AG404800
rosa_wichuraiana	Rw5G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	648
AciI	CCGC	3 cut(s)	250, 1060, 1202
AclWI	GGATC	6 cut(s)	422, 480, 517, 965, 978, 1124
AcoI	YGGCCR	2 cut(s)	251, 714
AcsI	RAATTY	3 cut(s)	115, 422, 953
AcuI	CTGAAG	1 cut(s)	283
AfaI	GTAC	2 cut(s)	779, 1137
AfiI	CCNNNNNNNGG	1 cut(s)	1001
AgsI	TTSAA	5 cut(s)	108, 205, 434, 539, 753
AjnI	CCWGG	3 cut(s)	213, 369, 981
Alw21I	GWGCWC	1 cut(s)	787
Alw26I	GTCTC	3 cut(s)	169, 936, 1215
Alw44I	GTGCAC	1 cut(s)	783
AlwI	GGATC	6 cut(s)	422, 480, 517, 965, 978, 1124
AoxI	GGCC	6 cut(s)	251, 349, 714, 868, 1061, 1211
ApaLI	GTGCAC	1 cut(s)	783
ApeKI	GCWGC	6 cut(s)	388, 584, 593, 628, 1028, 1048
ApoI	RAATTY	3 cut(s)	115, 422, 953
ArsI	GACNNNNNNTTYG	4 cut(s)	286, 318, 1109, 1141
Asp700I	GAANNNNTTC	1 cut(s)	953
AspS9I	GGNCC	3 cut(s)	349, 725, 1211
AsuHPI	GGTGA	2 cut(s)	332, 689
AvaII	GGWCC	1 cut(s)	725
BaeGI	GKGCMC	1 cut(s)	787
BalI	TGGCCA	1 cut(s)	716
BamHI	GGATCC	1 cut(s)	970
Bbv12I	GWGCWC	1 cut(s)	787
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	6 cut(s)	400, 596, 605, 640, 1015, 1060
BccI	CCATC	4 cut(s)	224, 878, 958, 1165
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	3 cut(s)	215, 371, 983
BciVI	GTATCC	1 cut(s)	1002
BcoDI	GTCTC	3 cut(s)	169, 936, 1215
BfaI	CTAG	2 cut(s)	98, 756
BfuI	GTATCC	1 cut(s)	1002
BisI	GCNGC	8 cut(s)	251, 389, 585, 594, 629, 1029, 1049, 1061
BlsI	GCNGC	8 cut(s)	252, 390, 586, 595, 630, 1030, 1050, 1062
Bme1390I	CCNGG	3 cut(s)	215, 371, 983
Bme18I	GGWCC	1 cut(s)	725
BmgT120I	GGNCC	3 cut(s)	349, 725, 1211
BmiI	GGNNCC	1 cut(s)	972
BmrFI	CCNGG	3 cut(s)	215, 371, 983
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	2 cut(s)	965, 1129
Bpu10I	CCTNAGC	1 cut(s)	465
Bsa29I	ATCGAT	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	687
BsaI	GGTCTC	2 cut(s)	169, 936
BsaJI	CCNNGG	2 cut(s)	409, 982
BsaWI	WCCGGW	1 cut(s)	945
Bsc4I	CCNNNNNNNGG	1 cut(s)	1001
Bse1I	ACTGG	2 cut(s)	178, 1133
Bse3DI	GCAATG	2 cut(s)	406, 804
Bse8I	GATNNNNATC	1 cut(s)	687
BseBI	CCWGG	3 cut(s)	215, 371, 983
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	409, 982
BseGI	GGATG	2 cut(s)	235, 688
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	1 cut(s)	1001
BseMI	GCAATG	2 cut(s)	406, 804
BseMII	CTCAG	2 cut(s)	456, 890
BseNI	ACTGG	2 cut(s)	178, 1133
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	787
BseXI	GCAGC	6 cut(s)	400, 596, 605, 640, 1015, 1060
BsgI	GTGCAG	1 cut(s)	612
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	6 cut(s)	253, 351, 716, 870, 1063, 1213
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	787
BsiSI	CCGG	1 cut(s)	946
BslI	CCNNNNNNNGG	1 cut(s)	1001
BsmAI	GTCTC	3 cut(s)	169, 936, 1215
BsmI	GAATGC	1 cut(s)	1204
BsnI	GGCC	6 cut(s)	253, 351, 716, 870, 1063, 1213
Bso31I	GGTCTC	2 cut(s)	169, 936
Bsp1286I	GDGCHC	1 cut(s)	787
Bsp143I	GATC	8 cut(s)	394, 414, 472, 509, 532, 579, 970, 1129
Bsp68I	TCGCGA	1 cut(s)	648
BspACI	CCGC	3 cut(s)	250, 1060, 1202
BspANI	GGCC	6 cut(s)	253, 351, 716, 870, 1063, 1213
BspCNI	CTCAG	2 cut(s)	457, 891
BspDI	ATCGAT	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	648
BspLI	GGNNCC	1 cut(s)	972
BspPI	GGATC	6 cut(s)	422, 480, 517, 965, 978, 1124
BspTNI	GGTCTC	2 cut(s)	169, 936
BsrDI	GCAATG	2 cut(s)	406, 804
BsrI	ACTGG	2 cut(s)	178, 1133
BssECI	CCNNGG	2 cut(s)	409, 982
BssMI	GATC	8 cut(s)	394, 414, 472, 509, 532, 579, 970, 1129
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	3 cut(s)	215, 371, 983
Bst4CI	ACNGT	2 cut(s)	80, 782
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	2 cut(s)	405, 590
BstC8I	GCNNGC	3 cut(s)	248, 544, 633
BstDEI	CTNAG	5 cut(s)	168, 225, 355, 465, 899
BstF5I	GGATG	2 cut(s)	235, 688
BstFNI	CGCG	1 cut(s)	648
BstKTI	GATC	8 cut(s)	397, 417, 475, 512, 535, 582, 973, 1132
BstMAI	GTCTC	3 cut(s)	169, 936, 1215
BstMBI	GATC	8 cut(s)	394, 414, 472, 509, 532, 579, 970, 1129
BstMWI	GCNNNNNNNGC	5 cut(s)	405, 590, 593, 1028, 1057
BstNI	CCWGG	3 cut(s)	215, 371, 983
BstSCI	CCNGG	3 cut(s)	213, 369, 981
BstSLI	GKGCMC	1 cut(s)	787
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	6 cut(s)	400, 596, 605, 640, 1015, 1060
BstX2I	RGATCY	2 cut(s)	509, 970
BstYI	RGATCY	2 cut(s)	509, 970
Bsu15I	ATCGAT	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	1002
BsuRI	GGCC	6 cut(s)	253, 351, 716, 870, 1063, 1213
BsuTUI	ATCGAT	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	1046
BtsCI	GGATG	2 cut(s)	235, 688
BtuMI	TCGCGA	1 cut(s)	648
Cac8I	GCNNGC	3 cut(s)	248, 544, 633
Cfr13I	GGNCC	3 cut(s)	349, 725, 1211
ClaI	ATCGAT	1 cut(s)	189
CsiI	ACCWGGT	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	778, 1136
CviAII	CATG	4 cut(s)	530, 617, 746, 921
CviQI	GTAC	2 cut(s)	778, 1136
DdeI	CTNAG	5 cut(s)	168, 225, 355, 465, 899
DpnI	GATC	8 cut(s)	396, 416, 474, 511, 534, 581, 972, 1131
DpnII	GATC	8 cut(s)	394, 414, 472, 509, 532, 579, 970, 1129
DraI	TTTAAA	1 cut(s)	820
EaeI	YGGCCR	2 cut(s)	251, 714
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	409
Eco31I	GGTCTC	2 cut(s)	169, 936
Eco47I	GGWCC	1 cut(s)	725
Eco57I	CTGAAG	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	3 cut(s)	213, 369, 981
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	4 cut(s)	533, 620, 749, 924
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	4 cut(s)	529, 616, 745, 920
FauI	CCCGC	1 cut(s)	1195
FauNDI	CATATG	1 cut(s)	772
Fnu4HI	GCNGC	8 cut(s)	251, 389, 585, 594, 629, 1029, 1049, 1061
FokI	GGATG	2 cut(s)	242, 675
Fsp4HI	GCNGC	8 cut(s)	251, 389, 585, 594, 629, 1029, 1049, 1061
FspBI	CTAG	2 cut(s)	98, 756
GluI	GCNGC	8 cut(s)	251, 389, 585, 594, 629, 1029, 1049, 1061
GsuI	CTGGAG	2 cut(s)	965, 1129
HaeIII	GGCC	6 cut(s)	253, 351, 716, 870, 1063, 1213
HapII	CCGG	1 cut(s)	946
Hin1II	CATG	4 cut(s)	533, 620, 749, 924
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	330, 742, 1153
HpaII	CCGG	1 cut(s)	946
HphI	GGTGA	2 cut(s)	332, 689
Hpy166II	GTNNAC	3 cut(s)	175, 343, 785
Hpy188I	TCNGA	6 cut(s)	121, 703, 729, 826, 900, 941
Hpy188III	TCNNGA	6 cut(s)	98, 305, 557, 647, 1043, 1146
Hpy8I	GTNNAC	3 cut(s)	175, 343, 785
HpyAV	CCTTC	2 cut(s)	317, 1143
HpyCH4III	ACNGT	2 cut(s)	80, 782
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	7 cut(s)	29, 529, 593, 616, 628, 785, 797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	405, 590, 593, 1028, 1057
HpyF3I	CTNAG	5 cut(s)	168, 225, 355, 465, 899
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	4 cut(s)	533, 620, 749, 924
Kzo9I	GATC	8 cut(s)	394, 414, 472, 509, 532, 579, 970, 1129
LmnI	GCTCC	5 cut(s)	856, 904, 984, 1045, 1148
Lsp1109I	GCAGC	6 cut(s)	400, 596, 605, 640, 1015, 1060
MabI	ACCWGGT	1 cut(s)	369
MaeI	CTAG	2 cut(s)	98, 756
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	1081
MalI	GATC	8 cut(s)	396, 416, 474, 511, 534, 581, 972, 1131
MboI	GATC	8 cut(s)	394, 414, 472, 509, 532, 579, 970, 1129
MboII	GAAGA	6 cut(s)	50, 53, 527, 589, 961, 1152
MflI	RGATCY	2 cut(s)	509, 970
MhlI	GDGCHC	1 cut(s)	787
MlsI	TGGCCA	1 cut(s)	716
MluCI	AATT	7 cut(s)	115, 140, 422, 446, 953, 1093, 1124
MluNI	TGGCCA	1 cut(s)	716
MlyI	GAGTC	2 cut(s)	736, 1162
MmeI	TCCRAC	1 cut(s)	249
Mox20I	TGGCCA	1 cut(s)	716
MroXI	GAANNNNTTC	1 cut(s)	953
MscI	TGGCCA	1 cut(s)	716
MseI	TTAA	1 cut(s)	819
MslI	CAYNNNNRTG	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	716
MspA1I	CMGCKG	2 cut(s)	587, 811
MspI	CCGG	1 cut(s)	946
MspR9I	CCNGG	3 cut(s)	215, 371, 983
Mva1269I	GAATGC	1 cut(s)	1204
MvaI	CCWGG	3 cut(s)	215, 371, 983
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	5 cut(s)	405, 590, 593, 1028, 1057
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	8 cut(s)	394, 414, 472, 509, 532, 579, 970, 1129
NlaIII	CATG	4 cut(s)	533, 620, 749, 924
NlaIV	GGNNCC	1 cut(s)	972
NmuCI	GTSAC	1 cut(s)	1081
NruI	TCGCGA	1 cut(s)	648
PctI	GAATGC	1 cut(s)	1204
PdmI	GAANNNNTTC	1 cut(s)	953
PfeI	GAWTC	1 cut(s)	330
PkrI	GCNGC	8 cut(s)	252, 390, 586, 595, 630, 1030, 1050, 1062
PleI	GAGTC	2 cut(s)	736, 1161
PpsI	GAGTC	2 cut(s)	736, 1161
Psp6I	CCWGG	3 cut(s)	213, 369, 981
PspGI	CCWGG	3 cut(s)	213, 369, 981
PspN4I	GGNNCC	1 cut(s)	972
PspPI	GGNCC	3 cut(s)	349, 725, 1211
PsuI	RGATCY	2 cut(s)	509, 970
PvuII	CAGCTG	2 cut(s)	587, 811
RruI	TCGCGA	1 cut(s)	648
RsaI	GTAC	2 cut(s)	779, 1137
RsaNI	GTAC	2 cut(s)	778, 1136
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	1 cut(s)	819
SatI	GCNGC	8 cut(s)	251, 389, 585, 594, 629, 1029, 1049, 1061
Sau3AI	GATC	8 cut(s)	394, 414, 472, 509, 532, 579, 970, 1129
Sau96I	GGNCC	3 cut(s)	349, 725, 1211
SchI	GAGTC	2 cut(s)	736, 1162
ScrFI	CCNGG	3 cut(s)	215, 371, 983
SduI	GDGCHC	1 cut(s)	787
SexAI	ACCWGGT	1 cut(s)	369
SinI	GGWCC	1 cut(s)	725
SmiMI	CAYNNNNRTG	1 cut(s)	528
Sse9I	AATT	7 cut(s)	115, 140, 422, 446, 953, 1093, 1124
SsiI	CCGC	3 cut(s)	250, 1060, 1202
SspMI	CTAG	2 cut(s)	98, 756
StyD4I	CCNGG	3 cut(s)	213, 369, 981
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	80, 782
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	189
TasI	AATT	7 cut(s)	115, 140, 422, 446, 953, 1093, 1124
TatI	WGTACW	1 cut(s)	1135
TauI	GCSGC	2 cut(s)	253, 1063
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	819
Tru9I	TTAA	1 cut(s)	819
TseFI	GTSAC	1 cut(s)	1081
TseI	GCWGC	6 cut(s)	388, 584, 593, 628, 1028, 1048
Tsp45I	GTSAC	1 cut(s)	1081
TspDTI	ATGAA	2 cut(s)	507, 590
TspGWI	ACGGA	1 cut(s)	963
VneI	GTGCAC	1 cut(s)	783
VpaK11BI	GGWCC	1 cut(s)	725
XapI	RAATTY	3 cut(s)	115, 422, 953
XbaI	TCTAGA	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	953
XspI	CTAG	2 cut(s)	98, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.