Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000275.1

Orthogroup ID

OG0008925

Physical Location & Seq

Genomic Coordinates Forward (+)

2037 .. 4631

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

atgagttgcttttgctgtaaaaaaaattcaaaaaaagaagaagagaggaacaataagaacaacaacacccacatcaacggtagcaaatcaaatcgtctagatacttcaaaagtgaattcagaggggaatgtaaaaagggaattgggtgtaaaaaaggaggaggtctctaaggttgaccagttatcaatcgatgtaaaggagttgaacataaacgaggaggtttctaaggatggaaagactaatggcaggcggccacaggcatttacgttggaggaaatggaagtagcaacccaaaacttcagtcctgactgctttataggtgaaggaggattcggcaaagtttacaagggccacttagagaaaactaaccaggttgttgctatcaagcagcttgatcgcaatggttgccaagggatcagggaatttgttgttgaagtattgacgctaggtttggcagatcaccagaatcttgtcaaattgattggcttttgtgctgagggggatcaaaggctattggtttatgaatatatgccatttggatctttggaaaaccatttgcatgatcttcaagctggcaggaatgttctggattggaatacaagaatgaagatcgcagctggtgcagcaagaggtttagagtatctgcatgagaaaatgcagcctgctatcatatatcgcgacctgaaatgctcaaacattttgctcggtgaggattatcatccaaagctatctgattttggcttggccaaagtaggtccgagtggagataagactcatgtttcaactagggttatgggaacatatgggtactgtgcaccagattatgcaatgacaggtcagctgacttttaaatcagatgtttatagcttcggggtggttcttttggagcttattacaggccgaaaagctattgatggcacaagacctctgagggagcaaaaccttgtagcatgggcaagacccttgttcagagaccggaagaaattctcacagatggtggatccgttgctccagggtcagtatcctgtcaggggattataccaagctcttgctattgctgcgatgtgcgttcaggagcagcctaatatgcggcctgtcataaccgatatagtgacagcactaaattaccttgcttcccagaaatatgacccccaatttgatccagtacaaagctccagaaggagtccatcttctcctaaagtgagaaaagatgataatatgagtaggaatgcgggtaatgggccagagagagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

418

Amino Acids

46.92

Weight (kDa)

8.68

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07870 AT1G07870 AT2G28590 AT2G28590
fragaria_vesca	FvH4_3g34150 FvH4_3g34150 FvH4_3g34150 FvH4_3g34150
malus_domestica	MD03G1107300.v1.1 MD11G1120000.v1.1
prunus_persica	Prupe.6G090100_v2.0.a1 Prupe.6G090100_v2.0.a1
pyrus_communis	pycom03g08680 pycom11g10140
rosa_chinensis	RchiOBHm_Chr5g0061791
rosa_laevigata	RLG00000035506
rosa_multiflora	Rmu_ssc0000275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018940
rosa_rugosa	Rorug05G0343900 Rorug05G0344000
rosa_samantha	Rh5AG404800
rosa_wichuraiana	Rw5G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	678
AciI	CCGC	3 cut(s)	250, 1090, 1232
AclWI	GGATC	6 cut(s)	422, 510, 547, 995, 1008, 1154
AcoI	YGGCCR	2 cut(s)	251, 744
AcsI	RAATTY	4 cut(s)	25, 115, 422, 983
AcuI	CTGAAG	1 cut(s)	283
AfaI	GTAC	2 cut(s)	809, 1167
AfiI	CCNNNNNNNGG	1 cut(s)	1031
AgsI	TTSAA	6 cut(s)	30, 108, 205, 434, 569, 783
AjnI	CCWGG	2 cut(s)	369, 1011
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	3 cut(s)	169, 966, 1245
Alw44I	GTGCAC	1 cut(s)	813
AlwI	GGATC	6 cut(s)	422, 510, 547, 995, 1008, 1154
AoxI	GGCC	6 cut(s)	251, 349, 744, 898, 1091, 1241
ApaLI	GTGCAC	1 cut(s)	813
ApeKI	GCWGC	6 cut(s)	388, 614, 623, 658, 1058, 1078
ApoI	RAATTY	4 cut(s)	25, 115, 422, 983
ArsI	GACNNNNNNTTYG	6 cut(s)	286, 318, 433, 465, 1139, 1171
Asp700I	GAANNNNTTC	1 cut(s)	983
AspS9I	GGNCC	3 cut(s)	349, 755, 1241
AsuHPI	GGTGA	3 cut(s)	332, 452, 719
AvaII	GGWCC	1 cut(s)	755
BaeGI	GKGCMC	1 cut(s)	817
BalI	TGGCCA	1 cut(s)	746
BamHI	GGATCC	1 cut(s)	1000
Bbv12I	GWGCWC	1 cut(s)	817
BbvCI	CCTCAGC	1 cut(s)	495
BbvI	GCAGC	6 cut(s)	400, 626, 635, 670, 1045, 1090
BccI	CCATC	4 cut(s)	224, 908, 988, 1195
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	2 cut(s)	371, 1013
BciVI	GTATCC	1 cut(s)	1032
BcoDI	GTCTC	3 cut(s)	169, 966, 1245
BfaI	CTAG	3 cut(s)	98, 446, 786
BfuI	GTATCC	1 cut(s)	1032
BisI	GCNGC	8 cut(s)	251, 389, 615, 624, 659, 1059, 1079, 1091
BlsI	GCNGC	8 cut(s)	252, 390, 616, 625, 660, 1060, 1080, 1092
Bme1390I	CCNGG	2 cut(s)	371, 1013
Bme18I	GGWCC	1 cut(s)	755
BmgT120I	GGNCC	3 cut(s)	349, 755, 1241
BmiI	GGNNCC	1 cut(s)	1002
BmrFI	CCNGG	2 cut(s)	371, 1013
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	2 cut(s)	995, 1159
Bpu10I	CCTNAGC	1 cut(s)	495
Bsa29I	ATCGAT	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	717
BsaI	GGTCTC	2 cut(s)	169, 966
BsaJI	CCNNGG	2 cut(s)	409, 1012
BsaWI	WCCGGW	1 cut(s)	975
Bsc4I	CCNNNNNNNGG	1 cut(s)	1031
Bse1I	ACTGG	2 cut(s)	178, 1163
Bse3DI	GCAATG	2 cut(s)	406, 834
Bse8I	GATNNNNATC	1 cut(s)	717
BseBI	CCWGG	2 cut(s)	371, 1013
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	409, 1012
BseGI	GGATG	2 cut(s)	235, 718
BseJI	GATNNNNATC	1 cut(s)	717
BseLI	CCNNNNNNNGG	1 cut(s)	1031
BseMI	GCAATG	2 cut(s)	406, 834
BseMII	CTCAG	2 cut(s)	486, 920
BseNI	ACTGG	2 cut(s)	178, 1163
BseRI	GAGGAG	2 cut(s)	173, 230
BseSI	GKGCMC	1 cut(s)	817
BseXI	GCAGC	6 cut(s)	400, 626, 635, 670, 1045, 1090
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	678
BshFI	GGCC	6 cut(s)	253, 351, 746, 900, 1093, 1243
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	817
BsiSI	CCGG	1 cut(s)	976
BslI	CCNNNNNNNGG	1 cut(s)	1031
BsmAI	GTCTC	3 cut(s)	169, 966, 1245
BsmI	GAATGC	1 cut(s)	1234
BsnI	GGCC	6 cut(s)	253, 351, 746, 900, 1093, 1243
Bso31I	GGTCTC	2 cut(s)	169, 966
Bsp1286I	GDGCHC	1 cut(s)	817
Bsp143I	GATC	9 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000, 1159
Bsp68I	TCGCGA	1 cut(s)	678
BspACI	CCGC	3 cut(s)	250, 1090, 1232
BspANI	GGCC	6 cut(s)	253, 351, 746, 900, 1093, 1243
BspCNI	CTCAG	2 cut(s)	487, 921
BspDI	ATCGAT	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	678
BspLI	GGNNCC	1 cut(s)	1002
BspPI	GGATC	6 cut(s)	422, 510, 547, 995, 1008, 1154
BspTNI	GGTCTC	2 cut(s)	169, 966
BsrDI	GCAATG	2 cut(s)	406, 834
BsrI	ACTGG	2 cut(s)	178, 1163
BssECI	CCNNGG	2 cut(s)	409, 1012
BssMI	GATC	9 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000, 1159
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	371, 1013
Bst4CI	ACNGT	2 cut(s)	80, 812
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	2 cut(s)	405, 620
BstC8I	GCNNGC	3 cut(s)	248, 574, 663
BstDEI	CTNAG	5 cut(s)	168, 225, 355, 495, 929
BstF5I	GGATG	2 cut(s)	235, 718
BstFNI	CGCG	1 cut(s)	678
BstKTI	GATC	9 cut(s)	397, 417, 460, 505, 542, 565, 612, 1003, 1162
BstMAI	GTCTC	3 cut(s)	169, 966, 1245
BstMBI	GATC	9 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000, 1159
BstMWI	GCNNNNNNNGC	5 cut(s)	405, 620, 623, 1058, 1087
BstNI	CCWGG	2 cut(s)	371, 1013
BstSCI	CCNGG	2 cut(s)	369, 1011
BstSLI	GKGCMC	1 cut(s)	817
BstUI	CGCG	1 cut(s)	678
BstV1I	GCAGC	6 cut(s)	400, 626, 635, 670, 1045, 1090
BstX2I	RGATCY	2 cut(s)	539, 1000
BstYI	RGATCY	2 cut(s)	539, 1000
Bsu15I	ATCGAT	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	1032
BsuRI	GGCC	6 cut(s)	253, 351, 746, 900, 1093, 1243
BsuTUI	ATCGAT	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	1076
BtsCI	GGATG	2 cut(s)	235, 718
BtuMI	TCGCGA	1 cut(s)	678
Cac8I	GCNNGC	3 cut(s)	248, 574, 663
Cfr13I	GGNCC	3 cut(s)	349, 755, 1241
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	451
CsiI	ACCWGGT	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	808, 1166
CviAII	CATG	4 cut(s)	560, 647, 776, 951
CviQI	GTAC	2 cut(s)	808, 1166
DdeI	CTNAG	5 cut(s)	168, 225, 355, 495, 929
DpnI	GATC	9 cut(s)	396, 416, 459, 504, 541, 564, 611, 1002, 1161
DpnII	GATC	9 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000, 1159
DraI	TTTAAA	1 cut(s)	850
EaeI	YGGCCR	2 cut(s)	251, 744
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	409
Eco31I	GGTCTC	2 cut(s)	169, 966
Eco47I	GGWCC	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	369, 1011
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	4 cut(s)	563, 650, 779, 954
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	4 cut(s)	559, 646, 775, 950
FauI	CCCGC	1 cut(s)	1225
FauNDI	CATATG	1 cut(s)	802
Fnu4HI	GCNGC	8 cut(s)	251, 389, 615, 624, 659, 1059, 1079, 1091
FokI	GGATG	2 cut(s)	242, 705
Fsp4HI	GCNGC	8 cut(s)	251, 389, 615, 624, 659, 1059, 1079, 1091
FspBI	CTAG	3 cut(s)	98, 446, 786
GluI	GCNGC	8 cut(s)	251, 389, 615, 624, 659, 1059, 1079, 1091
GsuI	CTGGAG	2 cut(s)	995, 1159
HaeIII	GGCC	6 cut(s)	253, 351, 746, 900, 1093, 1243
HapII	CCGG	1 cut(s)	976
HgaI	GACGC	1 cut(s)	451
Hin1II	CATG	4 cut(s)	563, 650, 779, 954
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	4 cut(s)	330, 466, 772, 1183
HpaII	CCGG	1 cut(s)	976
HphI	GGTGA	3 cut(s)	332, 452, 719
Hpy166II	GTNNAC	3 cut(s)	175, 343, 815
Hpy188I	TCNGA	6 cut(s)	121, 733, 759, 856, 930, 971
Hpy188III	TCNNGA	6 cut(s)	98, 305, 587, 677, 1073, 1176
Hpy8I	GTNNAC	3 cut(s)	175, 343, 815
HpyAV	CCTTC	2 cut(s)	317, 1173
HpyCH4III	ACNGT	2 cut(s)	80, 812
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	6 cut(s)	559, 623, 646, 658, 815, 827
HpyF10VI	GCNNNNNNNGC	5 cut(s)	405, 620, 623, 1058, 1087
HpyF3I	CTNAG	5 cut(s)	168, 225, 355, 495, 929
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	4 cut(s)	563, 650, 779, 954
Kzo9I	GATC	9 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000, 1159
LmnI	GCTCC	5 cut(s)	886, 934, 1014, 1075, 1178
Lsp1109I	GCAGC	6 cut(s)	400, 626, 635, 670, 1045, 1090
MabI	ACCWGGT	1 cut(s)	369
MaeI	CTAG	3 cut(s)	98, 446, 786
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	1111
MalI	GATC	9 cut(s)	396, 416, 459, 504, 541, 564, 611, 1002, 1161
MboI	GATC	9 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000, 1159
MboII	GAAGA	6 cut(s)	50, 53, 557, 619, 991, 1182
MflI	RGATCY	2 cut(s)	539, 1000
MhlI	GDGCHC	1 cut(s)	817
MlsI	TGGCCA	1 cut(s)	746
MluCI	AATT	8 cut(s)	25, 115, 140, 422, 476, 983, 1123, 1154
MluNI	TGGCCA	1 cut(s)	746
MlyI	GAGTC	2 cut(s)	766, 1192
MmeI	TCCRAC	1 cut(s)	249
Mox20I	TGGCCA	1 cut(s)	746
MroXI	GAANNNNTTC	1 cut(s)	983
MscI	TGGCCA	1 cut(s)	746
MseI	TTAA	1 cut(s)	849
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	746
MspA1I	CMGCKG	2 cut(s)	617, 841
MspI	CCGG	1 cut(s)	976
MspR9I	CCNGG	2 cut(s)	371, 1013
Mva1269I	GAATGC	1 cut(s)	1234
MvaI	CCWGG	2 cut(s)	371, 1013
MvnI	CGCG	1 cut(s)	678
MwoI	GCNNNNNNNGC	5 cut(s)	405, 620, 623, 1058, 1087
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	9 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000, 1159
NlaIII	CATG	4 cut(s)	563, 650, 779, 954
NlaIV	GGNNCC	1 cut(s)	1002
NmuCI	GTSAC	1 cut(s)	1111
NruI	TCGCGA	1 cut(s)	678
PctI	GAATGC	1 cut(s)	1234
PdmI	GAANNNNTTC	1 cut(s)	983
PfeI	GAWTC	2 cut(s)	330, 466
PkrI	GCNGC	8 cut(s)	252, 390, 616, 625, 660, 1060, 1080, 1092
PleI	GAGTC	2 cut(s)	766, 1191
PpsI	GAGTC	2 cut(s)	766, 1191
Psp6I	CCWGG	2 cut(s)	369, 1011
PspGI	CCWGG	2 cut(s)	369, 1011
PspN4I	GGNNCC	1 cut(s)	1002
PspPI	GGNCC	3 cut(s)	349, 755, 1241
PsuI	RGATCY	2 cut(s)	539, 1000
PvuII	CAGCTG	2 cut(s)	617, 841
RruI	TCGCGA	1 cut(s)	678
RsaI	GTAC	2 cut(s)	809, 1167
RsaNI	GTAC	2 cut(s)	808, 1166
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	1 cut(s)	849
SatI	GCNGC	8 cut(s)	251, 389, 615, 624, 659, 1059, 1079, 1091
Sau3AI	GATC	9 cut(s)	394, 414, 457, 502, 539, 562, 609, 1000, 1159
Sau96I	GGNCC	3 cut(s)	349, 755, 1241
SchI	GAGTC	2 cut(s)	766, 1192
ScrFI	CCNGG	2 cut(s)	371, 1013
SduI	GDGCHC	1 cut(s)	817
SexAI	ACCWGGT	1 cut(s)	369
SinI	GGWCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	558
Sse9I	AATT	8 cut(s)	25, 115, 140, 422, 476, 983, 1123, 1154
SsiI	CCGC	3 cut(s)	250, 1090, 1232
SspMI	CTAG	3 cut(s)	98, 446, 786
StyD4I	CCNGG	2 cut(s)	369, 1011
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	80, 812
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	189
TasI	AATT	8 cut(s)	25, 115, 140, 422, 476, 983, 1123, 1154
TatI	WGTACW	1 cut(s)	1165
TauI	GCSGC	2 cut(s)	253, 1093
TfiI	GAWTC	2 cut(s)	330, 466
Tru1I	TTAA	1 cut(s)	849
Tru9I	TTAA	1 cut(s)	849
TseFI	GTSAC	1 cut(s)	1111
TseI	GCWGC	6 cut(s)	388, 614, 623, 658, 1058, 1078
Tsp45I	GTSAC	1 cut(s)	1111
TspDTI	ATGAA	2 cut(s)	537, 620
TspGWI	ACGGA	1 cut(s)	993
VneI	GTGCAC	1 cut(s)	813
VpaK11BI	GGWCC	1 cut(s)	755
XapI	RAATTY	4 cut(s)	25, 115, 422, 983
XbaI	TCTAGA	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	983
XspI	CTAG	3 cut(s)	98, 446, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.