Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008925

Physical Location & Seq

Genomic Coordinates Forward (+)

29542506 .. 29546788

Gene Structure 4283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34150.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAGTTGCTTTGGTTGTTTAAGAAACTCAACCAAAGAATCAGAGAGGAAGAACAACAACAACAACCACAACGCCCACATCAACAACGCTACCAAATCTAATCGTCAAGACACTTCAAAAGTGAATTCAGAGAGGAATGTAAAAAAAGAATTGGGTGTAAAAAAGGAGGAAGTCTCTAAGGTTGACCAGTTATCGATCGATGTAAAGGAGTTGAACATAAAGGAAGAGGTTTCTAAGGATGGGAAGGCTAATGGCAGGCGGCCACAGGCATTTACGTTGGAGGAAATGGAAGTAGCAACCCGAAACTTCAGTCCAGATTGCTTTATAGGCGAAGGAGGTTTCGGCAAAGTTTACAAGGGCCACTTAGAGAAAACTAACCAGGTTGTTGCTATCAAGCAGCTTGATCGCAATGGTTGCCAAGGGATTAGGGAATTTGTTGTTGAAGTATTGACGCTAGGTTTGGCAGATCATCAGAATCTTGTCAAATTGATTGGCTTTTGTGCTGAAGGGGATCAAAGGCTCTTGGTTTATGAATATATGCCATTTGGATCTTTGGAAAACCATTTGCATGATCTTCAAGCTGGGAGGAATGTTCTGGATTGGAATACAAGAATGAAGATCGCAGCTGGTGCAGCAAGAGGTTTAGAGTATCTGCATGAGAAAATGCAGCCTGCTATCATATATCGTGACCTGAAATGCTCAAACATTTTGCTCGGTGAGGATTATCACCCAAAGCTATCTGACTTTGGTTTGGCCAAAGTTGGTCCGAGTGGAGATAAAACTCATGTTTCAACTAGGGTTATGGGAACATATGGGTACTGTGCACCAGATTATGCGATGACAGGTCAGCTGACTTTTAAATCAGATGTTTATAGCTTCGGAGTGGTTCTTTTGGAGCTCATAACAGGCAGGAAAGCTATTGATAGCACAAGACCTGTCAAGGAGCAAAACCTTGTAGCATGGGCAAGACCCTTGTTCAGAGACCGGAAGAAATTCTCACAGATGGTGGACCCATTGCTCCATGGTCAGTATCCTGTCAGGGGATTATACCAAGCTCTTGCTATTGCTGCGATGTGTGTTCAGGAGCAGCCTAATATGCGGCCTGTCATAACCGATATAGTGACTGCACTGAACTACCTGGCTTCCCAGAAATATGACCCCCAAAGCCATCCAGTACAAAGCTCCAGAAGGAGTCCATCTTCCCCTAGAGTGAGAAAAGATGATAGTAGGAGTAGGAATGCGGGTAATGAGCCTGAGAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

422

Amino Acids

47.33

Weight (kDa)

8.99

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	13 - 279	3.6e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	14 - 281	5.9e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07870 AT1G07870 AT2G28590 AT2G28590
fragaria_vesca	FvH4_3g34150 FvH4_3g34150 FvH4_3g34150 FvH4_3g34150
malus_domestica	MD03G1107300.v1.1 MD11G1120000.v1.1
prunus_persica	Prupe.6G090100_v2.0.a1 Prupe.6G090100_v2.0.a1
pyrus_communis	pycom03g08680 pycom11g10140
rosa_chinensis	RchiOBHm_Chr5g0061791
rosa_laevigata	RLG00000035506
rosa_multiflora	Rmu_ssc0000275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018940
rosa_rugosa	Rorug05G0343900 Rorug05G0344000
rosa_samantha	Rh5AG404800
rosa_wichuraiana	Rw5G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	259, 1099, 1241
AclWI	GGATC	2 cut(s)	519, 556
AcoI	YGGCCR	2 cut(s)	260, 753
AcsI	RAATTY	3 cut(s)	124, 431, 992
AcuI	CTGAAG	2 cut(s)	292, 525
AfaI	GTAC	2 cut(s)	818, 1176
AfiI	CCNNNNNNNGG	1 cut(s)	1040
AgsI	TTSAA	5 cut(s)	117, 214, 443, 578, 792
AjnI	CCWGG	2 cut(s)	378, 1137
Alw21I	GWGCWC	2 cut(s)	826, 900
Alw26I	GTCTC	3 cut(s)	178, 975, 1254
Alw44I	GTGCAC	1 cut(s)	822
AlwI	GGATC	2 cut(s)	519, 556
AoxI	GGCC	4 cut(s)	260, 358, 753, 1100
ApaLI	GTGCAC	1 cut(s)	822
ApeKI	GCWGC	6 cut(s)	397, 623, 632, 667, 1067, 1087
ApoI	RAATTY	3 cut(s)	124, 431, 992
ArsI	GACNNNNNNTTYG	4 cut(s)	295, 327, 442, 474
Asp700I	GAANNNNTTC	1 cut(s)	992
AspS9I	GGNCC	3 cut(s)	358, 764, 1009
AsuHPI	GGTGA	2 cut(s)	719, 728
AvaII	GGWCC	2 cut(s)	764, 1009
BaeGI	GKGCMC	1 cut(s)	826
BalI	TGGCCA	1 cut(s)	755
BanII	GRGCYC	1 cut(s)	900
Bbv12I	GWGCWC	2 cut(s)	826, 900
BbvI	GCAGC	6 cut(s)	409, 635, 644, 679, 1054, 1099
BccI	CCATC	4 cut(s)	233, 997, 1176, 1204
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	2 cut(s)	380, 1139
BciVI	GTATCC	1 cut(s)	1041
BcoDI	GTCTC	3 cut(s)	178, 975, 1254
BfaI	CTAG	3 cut(s)	455, 795, 1206
BfuI	GTATCC	1 cut(s)	1041
BisI	GCNGC	8 cut(s)	260, 398, 624, 633, 668, 1068, 1088, 1100
BlsI	GCNGC	8 cut(s)	261, 399, 625, 634, 669, 1069, 1089, 1101
Bme1390I	CCNGG	2 cut(s)	380, 1139
Bme18I	GGWCC	2 cut(s)	764, 1009
BmgT120I	GGNCC	3 cut(s)	358, 764, 1009
BmiI	GGNNCC	1 cut(s)	1011
BmrFI	CCNGG	2 cut(s)	380, 1139
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
BpmI	CTGGAG	1 cut(s)	1168
Bsa29I	ATCGAT	2 cut(s)	194, 198
BsaI	GGTCTC	1 cut(s)	975
BsaJI	CCNNGG	2 cut(s)	418, 1021
BsaWI	WCCGGW	1 cut(s)	984
Bsc4I	CCNNNNNNNGG	1 cut(s)	1040
Bse1I	ACTGG	2 cut(s)	187, 1172
Bse3DI	GCAATG	2 cut(s)	415, 1013
BseBI	CCWGG	2 cut(s)	380, 1139
BseCI	ATCGAT	2 cut(s)	194, 198
BseDI	CCNNGG	2 cut(s)	418, 1021
BseGI	GGATG	2 cut(s)	244, 1168
BseLI	CCNNNNNNNGG	1 cut(s)	1040
BseMI	GCAATG	2 cut(s)	415, 1013
BseMII	CTCAG	1 cut(s)	1245
BseNI	ACTGG	2 cut(s)	187, 1172
BseSI	GKGCMC	1 cut(s)	826
BseXI	GCAGC	6 cut(s)	409, 635, 644, 679, 1054, 1099
BseYI	CCCAGC	1 cut(s)	581
BsgI	GTGCAG	2 cut(s)	651, 1110
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	4 cut(s)	262, 360, 755, 1102
BshVI	ATCGAT	2 cut(s)	194, 198
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	2 cut(s)	826, 900
BsiSI	CCGG	1 cut(s)	985
BslI	CCNNNNNNNGG	1 cut(s)	1040
BsmAI	GTCTC	3 cut(s)	178, 975, 1254
BsmI	GAATGC	1 cut(s)	1243
BsnI	GGCC	4 cut(s)	262, 360, 755, 1102
Bso31I	GGTCTC	1 cut(s)	975
Bsp1286I	GDGCHC	2 cut(s)	826, 900
Bsp143I	GATC	7 cut(s)	195, 403, 466, 511, 548, 571, 618
Bsp19I	CCATGG	1 cut(s)	1021
BspACI	CCGC	3 cut(s)	259, 1099, 1241
BspANI	GGCC	4 cut(s)	262, 360, 755, 1102
BspCNI	CTCAG	1 cut(s)	1246
BspDI	ATCGAT	2 cut(s)	194, 198
BspLI	GGNNCC	1 cut(s)	1011
BspPI	GGATC	2 cut(s)	519, 556
BspTNI	GGTCTC	1 cut(s)	975
BsrDI	GCAATG	2 cut(s)	415, 1013
BsrI	ACTGG	2 cut(s)	187, 1172
BssECI	CCNNGG	2 cut(s)	418, 1021
BssMI	GATC	7 cut(s)	195, 403, 466, 511, 548, 571, 618
BssT1I	CCWWGG	2 cut(s)	418, 1021
Bst2UI	CCWGG	2 cut(s)	380, 1139
Bst4CI	ACNGT	1 cut(s)	821
Bst6I	CTCTTC	1 cut(s)	219
BstAPI	GCANNNNNTGC	2 cut(s)	414, 629
BstC8I	GCNNGC	2 cut(s)	257, 672
BstDEI	CTNAG	4 cut(s)	177, 234, 364, 1254
BstDSI	CCRYGG	1 cut(s)	1021
BstF5I	GGATG	2 cut(s)	244, 1168
BstKTI	GATC	7 cut(s)	198, 406, 469, 514, 551, 574, 621
BstMAI	GTCTC	3 cut(s)	178, 975, 1254
BstMBI	GATC	7 cut(s)	195, 403, 466, 511, 548, 571, 618
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	6 cut(s)	327, 414, 629, 632, 1067, 1096
BstNI	CCWGG	2 cut(s)	380, 1139
BstSCI	CCNGG	2 cut(s)	378, 1137
BstSLI	GKGCMC	1 cut(s)	826
BstV1I	GCAGC	6 cut(s)	409, 635, 644, 679, 1054, 1099
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
Bsu15I	ATCGAT	2 cut(s)	194, 198
BsuI	GTATCC	1 cut(s)	1041
BsuRI	GGCC	4 cut(s)	262, 360, 755, 1102
BsuTUI	ATCGAT	2 cut(s)	194, 198
BtgI	CCRYGG	1 cut(s)	1021
BtgZI	GCGATG	2 cut(s)	851, 1085
BtsCI	GGATG	2 cut(s)	244, 1168
BtsIMutI	CAGTG	1 cut(s)	1127
Cac8I	GCNNGC	2 cut(s)	257, 672
Cfr13I	GGNCC	3 cut(s)	358, 764, 1009
ClaI	ATCGAT	2 cut(s)	194, 198
CseI	GACGC	1 cut(s)	460
CsiI	ACCWGGT	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	817, 1175
CviAII	CATG	5 cut(s)	569, 656, 785, 960, 1022
CviQI	GTAC	2 cut(s)	817, 1175
DdeI	CTNAG	4 cut(s)	177, 234, 364, 1254
DpnI	GATC	7 cut(s)	197, 405, 468, 513, 550, 573, 620
DpnII	GATC	7 cut(s)	195, 403, 466, 511, 548, 571, 618
DraI	TTTAAA	1 cut(s)	859
EaeI	YGGCCR	2 cut(s)	260, 753
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	898
Eco130I	CCWWGG	2 cut(s)	418, 1021
Eco24I	GRGCYC	1 cut(s)	900
Eco31I	GGTCTC	1 cut(s)	975
Eco47I	GGWCC	2 cut(s)	764, 1009
Eco53kI	GAGCTC	1 cut(s)	898
Eco57I	CTGAAG	2 cut(s)	292, 525
EcoICRI	GAGCTC	1 cut(s)	898
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	378, 1137
EcoT14I	CCWWGG	2 cut(s)	418, 1021
EcoT38I	GRGCYC	1 cut(s)	900
ErhI	CCWWGG	2 cut(s)	418, 1021
FaeI	CATG	5 cut(s)	572, 659, 788, 963, 1025
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	5 cut(s)	568, 655, 784, 959, 1021
FauI	CCCGC	1 cut(s)	1234
FauNDI	CATATG	1 cut(s)	811
Fnu4HI	GCNGC	8 cut(s)	260, 398, 624, 633, 668, 1068, 1088, 1100
FokI	GGATG	2 cut(s)	251, 1155
FriOI	GRGCYC	1 cut(s)	900
Fsp4HI	GCNGC	8 cut(s)	260, 398, 624, 633, 668, 1068, 1088, 1100
FspBI	CTAG	3 cut(s)	455, 795, 1206
GluI	GCNGC	8 cut(s)	260, 398, 624, 633, 668, 1068, 1088, 1100
GsaI	CCCAGC	1 cut(s)	585
GsuI	CTGGAG	1 cut(s)	1168
HaeIII	GGCC	4 cut(s)	262, 360, 755, 1102
HapII	CCGG	1 cut(s)	985
HgaI	GACGC	1 cut(s)	460
Hin1II	CATG	5 cut(s)	572, 659, 788, 963, 1025
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	3 cut(s)	38, 475, 1192
HpaII	CCGG	1 cut(s)	985
HphI	GGTGA	2 cut(s)	719, 728
Hpy166II	GTNNAC	4 cut(s)	184, 352, 824, 1009
Hpy188I	TCNGA	8 cut(s)	43, 130, 474, 742, 768, 865, 881, 980
Hpy188III	TCNNGA	6 cut(s)	107, 314, 596, 686, 1082, 1185
Hpy8I	GTNNAC	4 cut(s)	184, 352, 824, 1009
HpyAV	CCTTC	4 cut(s)	238, 326, 500, 1182
HpyCH4III	ACNGT	1 cut(s)	821
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	6 cut(s)	568, 632, 655, 667, 824, 1127
HpyF10VI	GCNNNNNNNGC	6 cut(s)	327, 414, 629, 632, 1067, 1096
HpyF3I	CTNAG	4 cut(s)	177, 234, 364, 1254
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	5 cut(s)	572, 659, 788, 963, 1025
Kzo9I	GATC	7 cut(s)	195, 403, 466, 511, 548, 571, 618
LmnI	GCTCC	5 cut(s)	895, 943, 1023, 1084, 1187
Lsp1109I	GCAGC	6 cut(s)	409, 635, 644, 679, 1054, 1099
MabI	ACCWGGT	1 cut(s)	378
MaeI	CTAG	3 cut(s)	455, 795, 1206
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	2 cut(s)	686, 1120
MalI	GATC	7 cut(s)	197, 405, 468, 513, 550, 573, 620
MboI	GATC	7 cut(s)	195, 403, 466, 511, 548, 571, 618
MboII	GAAGA	6 cut(s)	61, 236, 566, 628, 1000, 1191
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	2 cut(s)	826, 900
MlsI	TGGCCA	1 cut(s)	755
MluCI	AATT	5 cut(s)	124, 149, 431, 485, 992
MluNI	TGGCCA	1 cut(s)	755
MlyI	GAGTC	1 cut(s)	1201
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	9 cut(s)	39, 126, 160, 220, 274, 329, 579, 632, 712
Mox20I	TGGCCA	1 cut(s)	755
MroXI	GAANNNNTTC	1 cut(s)	992
MscI	TGGCCA	1 cut(s)	755
MseI	TTAA	2 cut(s)	20, 858
MslI	CAYNNNNRTG	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	755
MspA1I	CMGCKG	2 cut(s)	626, 850
MspI	CCGG	1 cut(s)	985
MspR9I	CCNGG	2 cut(s)	380, 1139
Mva1269I	GAATGC	1 cut(s)	1243
MvaI	CCWGG	2 cut(s)	380, 1139
MwoI	GCNNNNNNNGC	6 cut(s)	327, 414, 629, 632, 1067, 1096
NcoI	CCATGG	1 cut(s)	1021
NdeI	CATATG	1 cut(s)	811
NdeII	GATC	7 cut(s)	195, 403, 466, 511, 548, 571, 618
NlaIII	CATG	5 cut(s)	572, 659, 788, 963, 1025
NlaIV	GGNNCC	1 cut(s)	1011
NmuCI	GTSAC	2 cut(s)	686, 1120
PctI	GAATGC	1 cut(s)	1243
PdmI	GAANNNNTTC	1 cut(s)	992
PfeI	GAWTC	2 cut(s)	38, 475
PkrI	GCNGC	8 cut(s)	261, 399, 625, 634, 669, 1069, 1089, 1101
Ple19I	CGATCG	1 cut(s)	198
PleI	GAGTC	1 cut(s)	1200
PpsI	GAGTC	1 cut(s)	1200
Psp124BI	GAGCTC	1 cut(s)	900
Psp6I	CCWGG	2 cut(s)	378, 1137
PspFI	CCCAGC	1 cut(s)	581
PspGI	CCWGG	2 cut(s)	378, 1137
PspN4I	GGNNCC	1 cut(s)	1011
PspPI	GGNCC	3 cut(s)	358, 764, 1009
PsuI	RGATCY	1 cut(s)	548
PvuI	CGATCG	1 cut(s)	198
PvuII	CAGCTG	2 cut(s)	626, 850
RsaI	GTAC	2 cut(s)	818, 1176
RsaNI	GTAC	2 cut(s)	817, 1175
RseI	CAYNNNNRTG	1 cut(s)	567
SacI	GAGCTC	1 cut(s)	900
SaqAI	TTAA	2 cut(s)	20, 858
SatI	GCNGC	8 cut(s)	260, 398, 624, 633, 668, 1068, 1088, 1100
Sau3AI	GATC	7 cut(s)	195, 403, 466, 511, 548, 571, 618
Sau96I	GGNCC	3 cut(s)	358, 764, 1009
SchI	GAGTC	1 cut(s)	1201
ScrFI	CCNGG	2 cut(s)	380, 1139
SduI	GDGCHC	2 cut(s)	826, 900
SexAI	ACCWGGT	1 cut(s)	378
SinI	GGWCC	2 cut(s)	764, 1009
SmiMI	CAYNNNNRTG	1 cut(s)	567
Sse9I	AATT	5 cut(s)	124, 149, 431, 485, 992
SsiI	CCGC	3 cut(s)	259, 1099, 1241
SspMI	CTAG	3 cut(s)	455, 795, 1206
SstI	GAGCTC	1 cut(s)	900
StyD4I	CCNGG	2 cut(s)	378, 1137
StyI	CCWWGG	2 cut(s)	418, 1021
TaaI	ACNGT	1 cut(s)	821
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	2 cut(s)	194, 198
TasI	AATT	5 cut(s)	124, 149, 431, 485, 992
TatI	WGTACW	1 cut(s)	1174
TauI	GCSGC	2 cut(s)	262, 1102
TfiI	GAWTC	2 cut(s)	38, 475
Tru1I	TTAA	2 cut(s)	20, 858
Tru9I	TTAA	2 cut(s)	20, 858
TscAI	CASTG	1 cut(s)	1134
TseFI	GTSAC	2 cut(s)	686, 1120
TseI	GCWGC	6 cut(s)	397, 623, 632, 667, 1067, 1087
Tsp45I	GTSAC	2 cut(s)	686, 1120
TspDTI	ATGAA	2 cut(s)	546, 629
TspRI	CASTG	1 cut(s)	1134
VneI	GTGCAC	1 cut(s)	822
VpaK11BI	GGWCC	2 cut(s)	764, 1009
XapI	RAATTY	3 cut(s)	124, 431, 992
XmnI	GAANNNNTTC	1 cut(s)	992
XspI	CTAG	3 cut(s)	455, 795, 1206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.