AT1G08035

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006078
Physical Location & Seq
Forward (+)
2494402 .. 2495313
912 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08035.1

Sequence Viewer

Length: 378 bp
ATGGTTTTACTGTCTTTTTCCAGATATTGTGACACCATCACCATGGACTATGAAGAAAACTCCATTGAAGGAACATCAGGTTATGTGGAACCCATAACTCCTATGATCTCTAAAGGAGACAGTGGAATCATTGCAATTTCTCCACTCTGTGACCACTACAATAATCACATGAGGATTGATTCTCTTACTACTTGTTCCGATGAAGAAATCATTGAGTCTTTGTATCAAAACATCTTTAGTATTGTTCTCTGCCTTCAAACAGAGGAATCTGGTTATGGTTCTCACACACCTGTCTCTGCAGCTTGCCCTGGAGCTCCCATGAAGCTTACCAAGTTATCAAGAAACATCGATCCAGGATTCCAACGGAAACTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.86

Weight (kDa)

4.63

Isoelectric Point (pI)

56.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 344
AdeI CACNNNGTG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 68, 257
AjnI CCWGG 2 cut(s) 307, 352
AluBI AGCT 3 cut(s) 302, 314, 325
AluI AGCT 3 cut(s) 302, 314, 325
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 2 cut(s) 111, 298
AlwI GGATC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 31
BanII GRGCYC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 311
BccI CCATC 1 cut(s) 44
BciT130I CCWGG 2 cut(s) 309, 354
BcoDI GTCTC 2 cut(s) 111, 298
BfmI CTRYAG 1 cut(s) 297
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 2 cut(s) 309, 354
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 2 cut(s) 309, 354
BpmI CTGGAG 1 cut(s) 330
Bsa29I ATCGAT 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 42, 307
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 2 cut(s) 309, 354
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 42, 307
BseMI GCAATG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 311
BshVI ATCGAT 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 316
BsmAI GTCTC 2 cut(s) 111, 298
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 2 cut(s) 105, 349
Bsp19I CCATGG 1 cut(s) 42
BspDI ATCGAT 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 301
BspPI GGATC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 129
BssECI CCNNGG 2 cut(s) 42, 307
BssMI GATC 2 cut(s) 105, 349
BssT1I CCWWGG 1 cut(s) 42
Bst2UI CCWGG 2 cut(s) 309, 354
Bst4CI ACNGT 2 cut(s) 12, 122
BstC8I GCNNGC 1 cut(s) 304
BstDSI CCRYGG 1 cut(s) 42
BstKTI GATC 2 cut(s) 108, 352
BstMAI GTCTC 2 cut(s) 111, 298
BstMBI GATC 2 cut(s) 105, 349
BstNI CCWGG 2 cut(s) 309, 354
BstSCI CCNGG 2 cut(s) 307, 352
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 311
BstXI CCANNNNNNTGG 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 348
BsuTUI ATCGAT 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 304
ClaI ATCGAT 1 cut(s) 348
CviAII CATG 3 cut(s) 43, 169, 319
CviJI RGCY 3 cut(s) 302, 314, 325
CviKI_1 RGCY 3 cut(s) 302, 314, 325
DpnI GATC 2 cut(s) 107, 351
DpnII GATC 2 cut(s) 105, 349
DraIII CACNNNGTG 1 cut(s) 149
Ecl136II GAGCTC 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 316
Eco53kI GAGCTC 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 314
EcoRII CCWGG 2 cut(s) 307, 352
EcoT14I CCWWGG 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 3 cut(s) 46, 172, 322
FaiI YATR 8 cut(s) 44, 51, 84, 95, 104, 170, 276, 320
FatI CATG 3 cut(s) 42, 168, 318
Fnu4HI GCNGC 1 cut(s) 300
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 300
GluI GCNGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 330
Hin1II CATG 3 cut(s) 46, 172, 322
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 5 cut(s) 126, 179, 215, 266, 357
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 199, 377
Hpy188III TCNNGA 2 cut(s) 21, 339
HpyAV CCTTC 2 cut(s) 62, 263
HpyCH4III ACNGT 2 cut(s) 12, 122
HpyCH4V TGCA 2 cut(s) 134, 299
Hsp92II CATG 3 cut(s) 46, 172, 322
Kzo9I GATC 2 cut(s) 105, 349
LmnI GCTCC 2 cut(s) 311, 319
LpnPI CCDG 8 cut(s) 34, 63, 255, 294, 303, 321, 339, 366
Lsp1109I GCAGC 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 29, 149
MalI GATC 2 cut(s) 107, 351
MboI GATC 2 cut(s) 105, 349
MboII GAAGA 3 cut(s) 65, 215, 364
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 2 cut(s) 165, 256
MroXI GAANNNNTTC 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 41
MspR9I CCNGG 2 cut(s) 309, 354
MvaI CCWGG 2 cut(s) 309, 354
NcoI CCATGG 1 cut(s) 42
NdeII GATC 2 cut(s) 105, 349
NlaIII CATG 3 cut(s) 46, 172, 322
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 2 cut(s) 29, 149
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 4 cut(s) 126, 179, 266, 357
PfoI TCCNGGA 1 cut(s) 352
PkrI GCNGC 1 cut(s) 301
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp124BI GAGCTC 1 cut(s) 316
Psp6I CCWGG 2 cut(s) 307, 352
PspGI CCWGG 2 cut(s) 307, 352
PspN4I GGNNCC 1 cut(s) 90
PstI CTGCAG 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 41
SacI GAGCTC 1 cut(s) 316
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 2 cut(s) 105, 349
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 309, 354
SduI GDGCHC 1 cut(s) 316
SetI ASST 5 cut(s) 82, 292, 304, 316, 327
SfcI CTRYAG 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 1 cut(s) 135
SstI GAGCTC 1 cut(s) 316
StyD4I CCNGG 2 cut(s) 307, 352
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 2 cut(s) 12, 122
TaqI TCGA 1 cut(s) 348
TasI AATT 1 cut(s) 135
TfiI GAWTC 4 cut(s) 126, 179, 266, 357
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 2 cut(s) 29, 149
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 2 cut(s) 29, 149
TspDTI ATGAA 3 cut(s) 66, 216, 335
TspRI CASTG 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.