Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006078

Physical Location & Seq

Genomic Coordinates Reverse (-)

7854097 .. 7854783

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG098400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGTTCTGGAGGTTGTACCAATGATATTTTGGAATTCCAAGAACAATCTCCAAAATCTTGTGAAGATTTGGACAAGGCTAAGGTTGGGGAGCCGCAAAAGGATGGTGAGCCACAAGCTGAATTAGGGCCTATTACTCCTGAAGCTGACCGAGAGAATGGGGAATCCCAACCAACATTTTTGAAGAAACCGCCAGTTTTAACTGTCAAGTCCAATAGAGATGGGGATGACCCTTTTGGTCTTTCTGATGATAGCAGCGGCAGCCCCAGGACACCTGAGGATGGAGTTTTTGATCCCTTTGCCCCTGGTCCGGAGAAGCTGGCAATGGCGCCTATGTGTAAGAAGTTTGTCAGCAAGTCGAGGAGTGTGGTTGCTCGTCAGCTGAGTTTTGATTCTCCGGTACAAATTTCAGAAGATGAGATTTCTACCAATGGTGTGGAGTCCCTTTCGGATGAAGAAATATTTGAAGCTGTGTATGAAAATTTATTGGAAGCTATTGTATCTGATCTGACTCTCAGTGTTCTTGGTGAACGTGCAAGGAAGGATTGGGACTGTGGTGATGACTGTACAACACCTCCTGGAACTCGGCTAAGTGGAATTGCTGAAACCTGTCCCGGTGCTCCCTCGAGGCCCTCTGGGAAATCAAGGAAGATTGATTTGGGCTTAATCAGAAGGCTCGAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

24.58

Weight (kDa)

4.45

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08035 AT1G08035 AT1G08035 AT2G28330
fragaria_vesca	FvH4_6g09290 FvH4_6g09290 FvH4_6g09290
malus_domestica	MD04G1179200.v1.1
prunus_persica	Prupe.6G299000_v2.0.a1
pyrus_communis	pycom04g15830
rosa_chinensis	RchiOBHm_Chr3g0459671
rosa_laevigata	RLG00000025068
rosa_multiflora	Rmu_co8248847.1_g000001 Rmu_sc0000240.1_g000020
rosa_roxburghii	Rroxscaffold_6G00420090
rosa_rugosa	Rorug03G0037000 Rorug03G0037100 Rorug03G0037200 Rorug03G0037300 Rorug03G0037400
rosa_samantha	Rh3AG095900 Rh3BG098400 Rh3BG098500 Rh3CG100400 Rh3DG099800
rosa_wichuraiana	Rw0G013770 Rw0G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	625
AccB1I	GGYRCC	1 cut(s)	328
AccIII	TCCGGA	1 cut(s)	310
AciI	CCGC	3 cut(s)	95, 191, 258
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	4 cut(s)	35, 405, 481, 680
AcuI	CTGAAG	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	329
AfaI	GTAC	3 cut(s)	19, 402, 568
AfiI	CCNNNNNNNGG	2 cut(s)	281, 310
AgsI	TTSAA	2 cut(s)	184, 467
AjnI	CCWGG	3 cut(s)	266, 304, 577
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AluBI	AGCT	6 cut(s)	119, 146, 319, 382, 470, 494
AluI	AGCT	6 cut(s)	119, 146, 319, 382, 470, 494
Alw21I	GWGCWC	1 cut(s)	622
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	625
Aor13HI	TCCGGA	1 cut(s)	310
AoxI	GGCC	2 cut(s)	128, 629
ApeKI	GCWGC	2 cut(s)	255, 261
ApoI	RAATTY	4 cut(s)	35, 405, 481, 680
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	3 cut(s)	128, 308, 630
AsuC2I	CCSGG	1 cut(s)	615
AsuHPI	GGTGA	3 cut(s)	119, 539, 569
AvaI	CYCGRG	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	308
AxyI	CCTNAGG	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	2 cut(s)	267, 273
BccI	CCATC	3 cut(s)	98, 215, 275
BciT130I	CCWGG	3 cut(s)	268, 306, 579
BcnI	CCSGG	1 cut(s)	615
BfoI	RGCGCY	1 cut(s)	332
BisI	GCNGC	4 cut(s)	95, 256, 259, 262
BlsI	GCNGC	4 cut(s)	96, 257, 260, 263
Bme1390I	CCNGG	4 cut(s)	268, 306, 579, 615
Bme18I	GGWCC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	625
BmgT120I	GGNCC	3 cut(s)	128, 308, 630
BmiI	GGNNCC	2 cut(s)	93, 330
BmrFI	CCNGG	4 cut(s)	268, 306, 579, 615
BpmI	CTGGAG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	266, 304
BsaWI	WCCGGW	2 cut(s)	310, 397
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 310
Bse1I	ACTGG	1 cut(s)	194
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	330
BseAI	TCCGGA	1 cut(s)	310
BseBI	CCWGG	3 cut(s)	268, 306, 579
BseDI	CCNNGG	2 cut(s)	266, 304
BseGI	GGATG	4 cut(s)	109, 232, 286, 457
BseLI	CCNNNNNNNGG	2 cut(s)	281, 310
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	3 cut(s)	267, 374, 529
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	376
BseXI	GCAGC	2 cut(s)	267, 273
BshFI	GGCC	2 cut(s)	130, 631
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	625
BsiSI	CCGG	3 cut(s)	311, 398, 615
BslFI	GGGAC	3 cut(s)	427, 563, 597
BslI	CCNNNNNNNGG	2 cut(s)	281, 310
BsmFI	GGGAC	3 cut(s)	427, 563, 597
BsnI	GGCC	2 cut(s)	130, 631
BsoBI	CYCGRG	1 cut(s)	625
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp13I	TCCGGA	1 cut(s)	310
Bsp1407I	TGTACA	1 cut(s)	566
Bsp143I	GATC	2 cut(s)	292, 505
BspACI	CCGC	3 cut(s)	95, 191, 258
BspANI	GGCC	2 cut(s)	130, 631
BspCNI	CTCAG	3 cut(s)	268, 375, 528
BspEI	TCCGGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	93, 330
BspPI	GGATC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	330
BsrGI	TGTACA	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	266, 304
BssMI	GATC	2 cut(s)	292, 505
BssNI	GRCGYC	1 cut(s)	329
Bst2UI	CCWGG	3 cut(s)	268, 306, 579
Bst4CI	ACNGT	3 cut(s)	205, 554, 566
BstACI	GRCGYC	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	5 cut(s)	81, 276, 383, 515, 590
BstF5I	GGATG	4 cut(s)	109, 232, 286, 457
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	2 cut(s)	295, 508
BstMBI	GATC	2 cut(s)	292, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	3 cut(s)	268, 306, 579
BstSCI	CCNGG	4 cut(s)	266, 304, 577, 613
BstV1I	GCAGC	2 cut(s)	267, 273
BstXI	CCANNNNNNTGG	1 cut(s)	436
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	130, 631
BtsCI	GGATG	4 cut(s)	109, 232, 286, 457
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	321
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	3 cut(s)	128, 308, 630
Csp6I	GTAC	3 cut(s)	18, 401, 567
CviQI	GTAC	3 cut(s)	18, 401, 567
DdeI	CTNAG	5 cut(s)	81, 276, 383, 515, 590
DinI	GGCGCC	1 cut(s)	330
DpnI	GATC	2 cut(s)	294, 507
DpnII	GATC	2 cut(s)	292, 505
Eco47I	GGWCC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	162
Eco81I	CCTNAGG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	625
EcoO109I	RGGNCCY	2 cut(s)	128, 630
EcoRI	GAATTC	1 cut(s)	35
EcoRII	CCWGG	3 cut(s)	266, 304, 577
EgeI	GGCGCC	1 cut(s)	330
EheI	GGCGCC	1 cut(s)	330
FaiI	YATR	2 cut(s)	335, 477
FaqI	GGGAC	3 cut(s)	427, 563, 597
Fnu4HI	GCNGC	4 cut(s)	95, 256, 259, 262
FokI	GGATG	4 cut(s)	116, 239, 293, 464
Fsp4HI	GCNGC	4 cut(s)	95, 256, 259, 262
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	4 cut(s)	95, 256, 259, 262
GsuI	CTGGAG	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	2 cut(s)	130, 631
HapII	CCGG	3 cut(s)	311, 398, 615
HhaI	GCGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	329
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	4 cut(s)	164, 392, 440, 511
HpaII	CCGG	3 cut(s)	311, 398, 615
HphI	GGTGA	3 cut(s)	119, 539, 569
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	6 cut(s)	247, 412, 451, 505, 510, 671
Hpy188III	TCNNGA	3 cut(s)	9, 140, 311
Hpy8I	GTNNAC	1 cut(s)	530
HpyAV	CCTTC	2 cut(s)	535, 666
HpyCH4III	ACNGT	3 cut(s)	205, 554, 566
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	5 cut(s)	81, 276, 383, 515, 590
HpySE526I	ACGT	1 cut(s)	532
Hsp92I	GRCGYC	1 cut(s)	329
HspAI	GCGC	1 cut(s)	329
KasI	GGCGCC	1 cut(s)	328
Kpn2I	TCCGGA	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	292, 505
LmnI	GCTCC	2 cut(s)	91, 625
Lsp1109I	GCAGC	2 cut(s)	267, 273
MaeII	ACGT	1 cut(s)	532
MalI	GATC	2 cut(s)	294, 507
MboI	GATC	2 cut(s)	292, 505
MboII	GAAGA	5 cut(s)	77, 196, 425, 467, 661
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	6 cut(s)	35, 122, 405, 481, 597, 680
Mly113I	GGCGCC	1 cut(s)	329
MlyI	GAGTC	2 cut(s)	449, 505
MnlI	CCTC	7 cut(s)	5, 271, 354, 585, 621, 634, 643
MroI	TCCGGA	1 cut(s)	310
MseI	TTAA	3 cut(s)	200, 665, 685
MspA1I	CMGCKG	2 cut(s)	258, 382
MspI	CCGG	3 cut(s)	311, 398, 615
MspR9I	CCNGG	4 cut(s)	268, 306, 579, 615
MvaI	CCWGG	3 cut(s)	268, 306, 579
MwoI	GCNNNNNNNGC	1 cut(s)	261
NarI	GGCGCC	1 cut(s)	329
NciI	CCSGG	1 cut(s)	615
NdeII	GATC	2 cut(s)	292, 505
NlaIV	GGNNCC	2 cut(s)	93, 330
NmeAIII	GCCGAG	1 cut(s)	565
PaeR7I	CTCGAG	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	164, 392
PfoI	TCCNGGA	1 cut(s)	577
PkrI	GCNGC	4 cut(s)	96, 257, 260, 263
PleI	GAGTC	2 cut(s)	448, 505
PluTI	GGCGCC	1 cut(s)	332
PpsI	GAGTC	2 cut(s)	448, 505
Psp6I	CCWGG	3 cut(s)	266, 304, 577
PspGI	CCWGG	3 cut(s)	266, 304, 577
PspN4I	GGNNCC	2 cut(s)	93, 330
PspPI	GGNCC	3 cut(s)	128, 308, 630
PspXI	VCTCGAGB	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	3 cut(s)	19, 402, 568
RsaNI	GTAC	3 cut(s)	18, 401, 567
SaqAI	TTAA	3 cut(s)	200, 665, 685
SatI	GCNGC	4 cut(s)	95, 256, 259, 262
Sau3AI	GATC	2 cut(s)	292, 505
Sau96I	GGNCC	3 cut(s)	128, 308, 630
SchI	GAGTC	2 cut(s)	449, 505
ScrFI	CCNGG	4 cut(s)	268, 306, 579, 615
SduI	GDGCHC	1 cut(s)	622
SfoI	GGCGCC	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	308
SlaI	CTCGAG	1 cut(s)	625
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
Sse9I	AATT	6 cut(s)	35, 122, 405, 481, 597, 680
SsiI	CCGC	3 cut(s)	95, 191, 258
SspDI	GGCGCC	1 cut(s)	328
SspI	AATATT	1 cut(s)	462
StyD4I	CCNGG	4 cut(s)	266, 304, 577, 613
TaaI	ACNGT	3 cut(s)	205, 554, 566
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	3 cut(s)	359, 626, 678
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	6 cut(s)	35, 122, 405, 481, 597, 680
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	2 cut(s)	97, 261
TfiI	GAWTC	2 cut(s)	164, 392
Tru1I	TTAA	3 cut(s)	200, 665, 685
Tru9I	TTAA	3 cut(s)	200, 665, 685
TscAI	CASTG	1 cut(s)	523
TseI	GCWGC	2 cut(s)	255, 261
TspDTI	ATGAA	2 cut(s)	468, 492
TspRI	CASTG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	4 cut(s)	35, 405, 481, 680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.