RLG00000025068

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006078
Physical Location & Seq
Forward (+)
41773084 .. 41776050
2967 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025068

Sequence Viewer

Length: 1059 bp
ATGCAAGCTCGCCGTACAACAACGGCTAAGAGAAAAACCTCGCTAGGAGGATTGGGTGCTCAGAGAGCTTGCGTCACCGAGATAGGACAGCGACCGCCAGAGACCCGGTGCCTCACAATGCAACGGGCAGATGCCCGATATAGGTTTATTGAAATTAGGGGAGTGACTCGACTGAGTTGCCTAGGTAGTGGGCCCGGAATCCGGATCTTGATTGGTCGAGGTGGTATAAATAAGAGGTGTGAAAGTTGCAGAGAGCACACGAGGGCCGGAGCGAACTGGAAAGCAAGTACACATTTTAAGTCTTCAGCTTTGGCTGCTTCGATTGCTTGGACTGTTCTTGTTCTTCTGCAACTCTGCTTTCTCACTCGGATGGGTTCTGGAGGTTGTACCAATGATATTTTGGAATTCGAAGAACAATCTCAGAAATCTTGTGAAAATTTGGACAAGGCTAAGGTTGGGGAGCCGCAAAAGGATGGTGCTGAGCCACAAGCGGAATTAGGGCCTATTACTCCTGAAGCTGACCGAGAGAATGGGGAATCCCAACCAACATTTTTGAAGAAACCGCCAGTTTTAACTGTCAAGTCCAATAGAGATGGGGATGACTCTTTTGGTCTTTCTGATGATAGCAGTGGCAGCCCCAGGACACCTGAGGATGGAGTTTTTGATCCCTTTGCCCCTGGTCCGGAGAAGTTGGCAATGGCGCCTATGTGTAAGAAGTTTGTCAGCAAGTCGAGGAGTGTGGTTGCTCGTCAGCTGAGTTTTGATTCTCCAGTACAAATTTCAGAAGATGAGATTTCTACCAATGGTGTGGAGTCCCTTTCGGACGAAGAAATATTTGAAGCTGTGTATGAAAATTTATTGGAAGCTATTGTATCTGATCTGACTCTCAGTGTTCTTGGTGAACGGGCAAGGAAGGATTGGGACTGTGGTGATGACTGTACAACACCTCCTGGAACTCGGCTAAGTGGAATTGCTGAAACCTGTCCCGGTGCTCCCTTGAGGCCCTCTGGGAAATCAAGGAAGATTGATTTGGGCTTAATCAGAAAGCTCGAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

38.2

Weight (kDa)

6.29

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 108, 700
AccIII TCCGGA 2 cut(s) 201, 682
AciI CCGC 4 cut(s) 95, 464, 491, 563
AclWI GGATC 2 cut(s) 212, 659
AcsI RAATTY 5 cut(s) 404, 436, 777, 853, 1052
AcuI CTGAAG 2 cut(s) 288, 534
AcyI GRCGYC 1 cut(s) 701
AfaI GTAC 5 cut(s) 16, 289, 388, 774, 940
AfiI CCNNNNNNNGG 4 cut(s) 141, 201, 653, 682
AgsI TTSAA 3 cut(s) 152, 556, 839
AjnI CCWGG 3 cut(s) 638, 676, 949
AjuI GAANNNNNNNTTGG 2 cut(s) 1013, 1045
AluBI AGCT 8 cut(s) 8, 68, 308, 518, 754, 842, 866, 1048
AluI AGCT 8 cut(s) 8, 68, 308, 518, 754, 842, 866, 1048
Alw21I GWGCWC 3 cut(s) 61, 258, 994
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 2 cut(s) 212, 659
Aor13HI TCCGGA 2 cut(s) 201, 682
AoxI GGCC 4 cut(s) 191, 264, 500, 1001
ApaI GGGCCC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 314, 633
ApoI RAATTY 5 cut(s) 404, 436, 777, 853, 1052
AspA2I CCTAGG 1 cut(s) 181
AspLEI GCGC 1 cut(s) 703
AspS9I GGNCC 6 cut(s) 191, 192, 264, 500, 680, 1002
AsuC2I CCSGG 3 cut(s) 106, 195, 987
AsuHPI GGTGA 3 cut(s) 67, 911, 941
AsuII TTCGAA 1 cut(s) 408
AvaII GGWCC 1 cut(s) 680
AvrII CCTAGG 1 cut(s) 181
AxyI CCTNAGG 1 cut(s) 648
BaeGI GKGCMC 1 cut(s) 195
BanI GGYRCC 2 cut(s) 108, 700
BanII GRGCYC 1 cut(s) 195
BauI CACGAG 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 3 cut(s) 61, 258, 994
BbvI GCAGC 2 cut(s) 301, 645
BccI CCATC 4 cut(s) 364, 467, 587, 647
BceAI ACGGC 1 cut(s) 39
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BciT130I CCWGG 3 cut(s) 640, 678, 951
BcnI CCSGG 3 cut(s) 106, 195, 987
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 2 cut(s) 44, 182
BfoI RGCGCY 1 cut(s) 704
BisI GCNGC 3 cut(s) 315, 464, 634
BlnI CCTAGG 1 cut(s) 181
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 3 cut(s) 316, 465, 635
Bme1390I CCNGG 6 cut(s) 106, 195, 640, 678, 951, 987
Bme18I GGWCC 1 cut(s) 680
BmgT120I GGNCC 6 cut(s) 191, 192, 264, 500, 680, 1002
BmiI GGNNCC 4 cut(s) 110, 193, 462, 702
BmrFI CCNGG 6 cut(s) 106, 195, 640, 678, 951, 987
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 294
BpmI CTGGAG 2 cut(s) 399, 753
Bpu10I CCTNAGC 1 cut(s) 450
Bpu1102I GCTNAGC 1 cut(s) 480
Bpu14I TTCGAA 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 1018
BpuMI CCSGG 3 cut(s) 106, 195, 987
BsaHI GRCGYC 1 cut(s) 701
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 3 cut(s) 181, 638, 676
BsaWI WCCGGW 2 cut(s) 201, 682
BsaXI ACNNNNNCTCC 2 cut(s) 931, 961
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 201, 653, 682
Bse1I ACTGG 3 cut(s) 281, 566, 770
Bse21I CCTNAGG 1 cut(s) 648
Bse3DI GCAATG 1 cut(s) 702
BseAI TCCGGA 2 cut(s) 201, 682
BseBI CCWGG 3 cut(s) 640, 678, 951
BseDI CCNNGG 3 cut(s) 181, 638, 676
BseGI GGATG 4 cut(s) 375, 478, 604, 658
BseLI CCNNNNNNNGG 4 cut(s) 141, 201, 653, 682
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 7 cut(s) 74, 164, 434, 471, 639, 746, 901
BseNI ACTGG 3 cut(s) 281, 566, 770
BseRI GAGGAG 1 cut(s) 748
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 2 cut(s) 301, 645
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 4 cut(s) 193, 266, 502, 1003
BshNI GGYRCC 2 cut(s) 108, 700
BsiEI CGRYCG 1 cut(s) 95
BsiHKAI GWGCWC 3 cut(s) 61, 258, 994
BsiSI CCGG 6 cut(s) 106, 195, 202, 267, 683, 987
BslFI GGGAC 3 cut(s) 799, 935, 969
BslI CCNNNNNNNGG 4 cut(s) 141, 201, 653, 682
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 3 cut(s) 799, 935, 969
BsnI GGCC 4 cut(s) 193, 266, 502, 1003
Bso31I GGTCTC 1 cut(s) 95
Bsp119I TTCGAA 1 cut(s) 408
Bsp120I GGGCCC 1 cut(s) 191
Bsp1286I GDGCHC 4 cut(s) 61, 195, 258, 994
Bsp13I TCCGGA 2 cut(s) 201, 682
Bsp1407I TGTACA 1 cut(s) 938
Bsp143I GATC 3 cut(s) 204, 664, 877
Bsp1720I GCTNAGC 1 cut(s) 480
BspACI CCGC 4 cut(s) 95, 464, 491, 563
BspANI GGCC 4 cut(s) 193, 266, 502, 1003
BspCNI CTCAG 7 cut(s) 73, 165, 433, 472, 640, 747, 900
BspEI TCCGGA 2 cut(s) 201, 682
BspLI GGNNCC 4 cut(s) 110, 193, 462, 702
BspPI GGATC 2 cut(s) 212, 659
BspT104I TTCGAA 1 cut(s) 408
BspT107I GGYRCC 2 cut(s) 108, 700
BspTNI GGTCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 702
BsrGI TGTACA 1 cut(s) 938
BsrI ACTGG 3 cut(s) 281, 566, 770
BssECI CCNNGG 3 cut(s) 181, 638, 676
BssMI GATC 3 cut(s) 204, 664, 877
BssNI GRCGYC 1 cut(s) 701
BssSI CACGAG 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 181
Bst2BI CACGAG 1 cut(s) 259
Bst2UI CCWGG 3 cut(s) 640, 678, 951
Bst4CI ACNGT 4 cut(s) 334, 577, 926, 938
BstACI GRCGYC 1 cut(s) 701
BstAUI TGTACA 1 cut(s) 938
BstBI TTCGAA 1 cut(s) 408
BstC8I GCNNGC 3 cut(s) 6, 10, 70
BstF5I GGATG 4 cut(s) 375, 478, 604, 658
BstH2I RGCGCY 1 cut(s) 704
BstHHI GCGC 1 cut(s) 703
BstKTI GATC 3 cut(s) 207, 667, 880
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 3 cut(s) 204, 664, 877
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 4 cut(s) 65, 314, 323, 633
BstNI CCWGG 3 cut(s) 640, 678, 951
BstSCI CCNGG 6 cut(s) 104, 193, 638, 676, 949, 985
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 301, 645
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 204
BstXI CCANNNNNNTGG 1 cut(s) 808
BstYI RGATCY 1 cut(s) 204
Bsu36I CCTNAGG 1 cut(s) 648
BsuRI GGCC 4 cut(s) 193, 266, 502, 1003
BtsCI GGATG 4 cut(s) 375, 478, 604, 658
BtsI GCAGTG 1 cut(s) 634
BtsIMutI CAGTG 2 cut(s) 634, 895
Cac8I GCNNGC 3 cut(s) 6, 10, 70
CfoI GCGC 1 cut(s) 703
Cfr13I GGNCC 6 cut(s) 191, 192, 264, 500, 680, 1002
CseI GACGC 1 cut(s) 61
Csp6I GTAC 5 cut(s) 15, 288, 387, 773, 939
CviQI GTAC 5 cut(s) 15, 288, 387, 773, 939
DinI GGCGCC 1 cut(s) 702
DpnI GATC 3 cut(s) 206, 666, 879
DpnII GATC 3 cut(s) 204, 664, 877
Eco130I CCWWGG 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 680
Eco57I CTGAAG 2 cut(s) 288, 534
Eco81I CCTNAGG 1 cut(s) 648
EcoO109I RGGNCCY 2 cut(s) 500, 1002
EcoRI GAATTC 1 cut(s) 404
EcoRII CCWGG 3 cut(s) 638, 676, 949
EcoT14I CCWWGG 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 195
EgeI GGCGCC 1 cut(s) 702
EheI GGCGCC 1 cut(s) 702
ErhI CCWWGG 1 cut(s) 181
FaiI YATR 4 cut(s) 141, 227, 707, 849
FaqI GGGAC 3 cut(s) 799, 935, 969
Fnu4HI GCNGC 3 cut(s) 315, 464, 634
FokI GGATG 4 cut(s) 382, 485, 611, 665
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 3 cut(s) 315, 464, 634
FspBI CTAG 2 cut(s) 44, 182
GlaI GCGC 1 cut(s) 702
GluI GCNGC 3 cut(s) 315, 464, 634
GsuI CTGGAG 2 cut(s) 399, 753
HaeII RGCGCY 1 cut(s) 704
HaeIII GGCC 4 cut(s) 193, 266, 502, 1003
HapII CCGG 6 cut(s) 106, 195, 202, 267, 683, 987
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 703
Hin1I GRCGYC 1 cut(s) 701
Hin6I GCGC 1 cut(s) 701
HinP1I GCGC 1 cut(s) 701
HinfI GANTC 7 cut(s) 166, 198, 536, 602, 764, 812, 883
HpaII CCGG 6 cut(s) 106, 195, 202, 267, 683, 987
HphI GGTGA 3 cut(s) 67, 911, 941
Hpy166II GTNNAC 2 cut(s) 290, 902
Hpy188I TCNGA 9 cut(s) 63, 369, 423, 619, 784, 823, 877, 882, 1043
Hpy188III TCNNGA 5 cut(s) 202, 208, 378, 512, 683
Hpy8I GTNNAC 2 cut(s) 290, 902
HpyAV CCTTC 1 cut(s) 907
HpyCH4III ACNGT 4 cut(s) 334, 577, 926, 938
HpyCH4V TGCA 4 cut(s) 4, 121, 249, 349
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 314, 323, 633
Hsp92I GRCGYC 1 cut(s) 701
HspAI GCGC 1 cut(s) 701
KasI GGCGCC 1 cut(s) 700
Kpn2I TCCGGA 2 cut(s) 201, 682
Kzo9I GATC 3 cut(s) 204, 664, 877
LmnI GCTCC 3 cut(s) 269, 460, 997
Lsp1109I GCAGC 2 cut(s) 301, 645
LweI GCATC 1 cut(s) 121
MaeI CTAG 2 cut(s) 44, 182
MaeIII GTNAC 2 cut(s) 73, 163
MalI GATC 3 cut(s) 206, 666, 879
MboI GATC 3 cut(s) 204, 664, 877
MboII GAAGA 7 cut(s) 294, 335, 422, 568, 797, 839, 1033
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 4 cut(s) 61, 195, 258, 994
MluCI AATT 8 cut(s) 153, 404, 436, 494, 777, 853, 969, 1052
Mly113I GGCGCC 1 cut(s) 701
MlyI GAGTC 4 cut(s) 160, 596, 821, 877
MroI TCCGGA 2 cut(s) 201, 682
MseI TTAA 4 cut(s) 297, 572, 1037, 1057
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 754
MspI CCGG 6 cut(s) 106, 195, 202, 267, 683, 987
MspR9I CCNGG 6 cut(s) 106, 195, 640, 678, 951, 987
MvaI CCWGG 3 cut(s) 640, 678, 951
MwoI GCNNNNNNNGC 4 cut(s) 65, 314, 323, 633
NarI GGCGCC 1 cut(s) 701
NciI CCSGG 3 cut(s) 106, 195, 987
NdeII GATC 3 cut(s) 204, 664, 877
NlaIV GGNNCC 4 cut(s) 110, 193, 462, 702
NmeAIII GCCGAG 1 cut(s) 937
NmuCI GTSAC 2 cut(s) 73, 163
NspV TTCGAA 1 cut(s) 408
PfeI GAWTC 3 cut(s) 198, 536, 764
PfoI TCCNGGA 1 cut(s) 949
PkrI GCNGC 3 cut(s) 316, 465, 635
PleI GAGTC 4 cut(s) 160, 596, 820, 877
PluTI GGCGCC 1 cut(s) 704
PpsI GAGTC 4 cut(s) 160, 596, 820, 877
Psp6I CCWGG 3 cut(s) 638, 676, 949
PspGI CCWGG 3 cut(s) 638, 676, 949
PspN4I GGNNCC 4 cut(s) 110, 193, 462, 702
PspOMI GGGCCC 1 cut(s) 191
PspPI GGNCC 6 cut(s) 191, 192, 264, 500, 680, 1002
PsuI RGATCY 1 cut(s) 204
PvuII CAGCTG 1 cut(s) 754
RsaI GTAC 5 cut(s) 16, 289, 388, 774, 940
RsaNI GTAC 5 cut(s) 15, 288, 387, 773, 939
RseI CAYNNNNRTG 1 cut(s) 368
SaqAI TTAA 4 cut(s) 297, 572, 1037, 1057
SatI GCNGC 3 cut(s) 315, 464, 634
Sau3AI GATC 3 cut(s) 204, 664, 877
Sau96I GGNCC 6 cut(s) 191, 192, 264, 500, 680, 1002
SchI GAGTC 4 cut(s) 160, 596, 821, 877
ScrFI CCNGG 6 cut(s) 106, 195, 640, 678, 951, 987
SduI GDGCHC 4 cut(s) 61, 195, 258, 994
SfaNI GCATC 1 cut(s) 121
SfoI GGCGCC 1 cut(s) 702
SfuI TTCGAA 1 cut(s) 408
SinI GGWCC 1 cut(s) 680
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 997
SmoI CTYRAG 1 cut(s) 997
Sse9I AATT 8 cut(s) 153, 404, 436, 494, 777, 853, 969, 1052
SsiI CCGC 4 cut(s) 95, 464, 491, 563
SspDI GGCGCC 1 cut(s) 700
SspI AATATT 1 cut(s) 834
SspMI CTAG 2 cut(s) 44, 182
StyD4I CCNGG 6 cut(s) 104, 193, 638, 676, 949, 985
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 4 cut(s) 334, 577, 926, 938
TaqI TCGA 6 cut(s) 169, 217, 320, 408, 731, 1050
TaqII GACCGA 1 cut(s) 537
TasI AATT 8 cut(s) 153, 404, 436, 494, 777, 853, 969, 1052
TatI WGTACW 3 cut(s) 287, 772, 938
TauI GCSGC 1 cut(s) 466
TfiI GAWTC 3 cut(s) 198, 536, 764
Tru1I TTAA 4 cut(s) 297, 572, 1037, 1057
Tru9I TTAA 4 cut(s) 297, 572, 1037, 1057
TscAI CASTG 2 cut(s) 634, 895
TseFI GTSAC 2 cut(s) 73, 163
TseI GCWGC 2 cut(s) 314, 633
Tsp45I GTSAC 2 cut(s) 73, 163
TspDTI ATGAA 1 cut(s) 864
TspRI CASTG 2 cut(s) 634, 895
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 5 cut(s) 404, 436, 777, 853, 1052
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XmaJI CCTAGG 1 cut(s) 181
XspI CTAG 2 cut(s) 44, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.